Gene

KWMTBOMO11575

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):8892013-8895787      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.804

CDS

ATGGAATTACTTCTACGTAAACTCGAAGAGAAATTAGATAAACAAGCCGACCAGATAACAAAGGCGGTAACTAAGAACGTCACAGAAGCTATAGACGAGAAAATAAATGCGATAATTGAAGAAAATAAACTCCTCACAAACAAAGTATCCGAACTAGAGTTGAAAATTAAATCCTTAGAAAGAGAGAAACGAAAAAACAACCTCGTCTTCTTCGGAGTAGACGAAATAGGAAAATCCGAGCGAGAATTAGTAGATTATATAAAAGATACCATAGAAGATCTAGGAGTGCAAATGAACAGCCAAGAGATTAGTAACATATATAGAATCGGAAGAAAGACGGAAAACAAAAACCGACCAGTCGTAATTTCTTTAACAACCCTGTGGAAGAAGCATCTTGTACTCAAGAACAAGTCTAATCTCCCGTCAAATATATATGTTAAAGAGGATTACTCCAAGGAAACTCTGGAAAGGCGCAAAAAACTACAATCCCAAGTGGAAGAAGAAAAAAAGAAAGAACAACACAAAGAAAAAATAGATTCATCGTCCATCAACACACTGAAAGAAATAGTAAACTCGAACAGAAGTGTCACAGAAAAATATGATCTCATGGTCACACAACTGTCAAAATTGAGGAAAGTAAATGCAACAAAAGATGTGAAGTTTGGTGCGAAGACAATGGAGCTCCTAGAAGAACGAAAAGTACTTATAACAGACAAATCAAAAACTGAAGAAAACCGTAAGTTAATATCTAAACTGAGCAAAGAGATTCGGGAAAGCATAAGAAAGGATAGGAAATTAAGAAGAACGAAAAAATTAGAAGATGAAATTCTAAGAACAGGGAGAACAAGAAAAGCTTTTAAGGAATTAAGAGAACATGGAGTGGAATGGATACCAAAACTAAAAAGCAACAGCTCCAAACAAGCAACAAATCGCAGAAAAATTCAGAGTCTTGCTACAGATTACTATCGAACTCTTTACTCGGACAATGACACCGACCGAGAAAAGACCGCCGTTAACGATCCTAGTACGAATAATAAAAAAGTACCACCAGTACTCTTGCAAGAAGTACAGAAAGCCATCATGTCTCAGAAGCCAGAAAAATCTCCAGGACCCGACAGTATATCAAATGAGCTGATTAGAGGTAACGAAGAAGAAATAAGCCCAATCCTAACCAAGCTATTCAATGATATTGTAACAACAGGTGTCATCCCAAAACAATGGAATGAGTCACATATCATCCTCCTCCATAAGAAAGGAGATAAAGATGATATTGGCAACTACAGACCAATCAGTCTAATATCAAATGTGTACAAAGTCTTCGCAAAAGTAATTCTAGAAAGAATAACAAGGGCTTTAGACGAAAACCAACCGATCGAGCAGGCAGGATTTAGAAAGAACTACAGCACTATAGACCACATCCACACAATCAAACAAGTTTTGGAAAAATACAATGAATACCAGAAGACTTTGTATATCTGCTTTATAGACTACTCCAAAGCATTTGACAGTATAAAACACAAATTTATTTGGCTGAGTCTAAAACAACAAGGAGTGGACGATATATATATAGAACTAATCAAATCCATCTACAAAAAAAGTAAAAGCAGTATTAAATTAGAGTCAAAAGGAGACCCCTTTCCAATAAACAGAGGCGTAAGACAAGGTGACCCATTATCTCCCAAGCTGTTTAATGCAGTACTGGAATGCACATTTAGAAGATTAAACTGGGATAACTATGGTATTATAATCAATGGAAGTCGCCTCAATCATTTGAGATTTGCAGATGATATTATCTTGCTAGAAGAAGATCCTAAGAAACTTGAACACATGATTAAAGAAATAGTAGAAAAAAGCAGAGAAGTAGGGCTAGAAATTAATGCAGATAAAACGAAACTAATGACGAACTCAACAGAAAGGAACATAGAGGTAAACGGAACCAAGTTCGAATATGTGAAGGAATTCGTTTACCTAGGACAAATTATATCTTCTGAAGACTCCATGTCCAAGGAAATAAACAAAAGAATAGCATGCGGTTGGAAAAAATACTGGTCCTTGAAAGAGATAATGAAGAATAAAGATCTAGGTATACATATCAAGAGAAAGACTTTCAACACTTGTATTCTCCCTTGCATGACTTACGGATGTGAGACATGGACACTAACTGACAAACATAGAGAAAAACTTGCTAAAACAGAGAGAGCAATGGAAAGAAGCATGTTGAGTATCAGACTTAGTGACAGGATTCGAAATTGGGAAATAAGAAGGAAGACAAAAGTAACGGATATAATAACTCGTATAGAAAATCTTAAATGGAGTTGGACAGGACATATGCTACGTTGCAAAAAAAACAAGTGGAGCAAACAAGTTACTTTATGGTATCCAAGAGGGGACACCAGAAGACAGGGGCGACCAAAAACGAGATGGAGCGATGATATACGCCTAACCCTAGGACCATACTGGACCAGAGTTGCAGAGGACCGAGCCCAATGGAGAGAGCTGGAGGAGGCCTATGCCACGAGGCACGCCGAACTCCGAGATATACTATAA

Protein

MELLLRKLEEKLDKQADQITKAVTKNVTEAIDEKINAIIEENKLLTNKVSELELKIKSLEREKRKNNLVFFGVDEIGKSERELVDYIKDTIEDLGVQMNSQEISNIYRIGRKTENKNRPVVISLTTLWKKHLVLKNKSNLPSNIYVKEDYSKETLERRKKLQSQVEEEKKKEQHKEKIDSSSINTLKEIVNSNRSVTEKYDLMVTQLSKLRKVNATKDVKFGAKTMELLEERKVLITDKSKTEENRKLISKLSKEIRESIRKDRKLRRTKKLEDEILRTGRTRKAFKELREHGVEWIPKLKSNSSKQATNRRKIQSLATDYYRTLYSDNDTDREKTAVNDPSTNNKKVPPVLLQEVQKAIMSQKPEKSPGPDSISNELIRGNEEEISPILTKLFNDIVTTGVIPKQWNESHIILLHKKGDKDDIGNYRPISLISNVYKVFAKVILERITRALDENQPIEQAGFRKNYSTIDHIHTIKQVLEKYNEYQKTLYICFIDYSKAFDSIKHKFIWLSLKQQGVDDIYIELIKSIYKKSKSSIKLESKGDPFPINRGVRQGDPLSPKLFNAVLECTFRRLNWDNYGIIINGSRLNHLRFADDIILLEEDPKKLEHMIKEIVEKSREVGLEINADKTKLMTNSTERNIEVNGTKFEYVKEFVYLGQIISSEDSMSKEINKRIACGWKKYWSLKEIMKNKDLGIHIKRKTFNTCILPCMTYGCETWTLTDKHREKLAKTERAMERSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCKKNKWSKQVTLWYPRGDTRRQGRPKTRWSDDIRLTLGPYWTRVAEDRAQWRELEEAYATRHAELRDIL

Uniprot

D7F179   A0A2W1BCS2   D7F176   D7F177   D7F178   A0A069DZM5   + More
A0A2H1WF27   A0A2W1BZV1   D7F164   D7F157   A0A016S1D2   A0A2G8JFM9   A0A016S403   A0A016U784   A0A016WPY4   A0A016WCB8   A0A016ULU9   A0A0K0FAW8   A0A016W5P9   A0A016TK11   A0A016W4R1   A0A016SG46   A0A016UN79   A0A016V6A2   E3LN61   E3NC15   A0A2H2JFN0   A0A016WEQ1   E3NB36   E3MKV4   E3NGJ2   A0A2H2IZ03   E3MH09   K7HKK6   A0A2H2JHK8   A0A016WA79   K7HC54   K7HC53   A0A016S795   A0A016VVN3   A0A016S5B2   A0A2H2JCW1   A0A2H2JKX8   K7IG36   A0A2H2JKG1   A0A016VW83   A0A016SSP6   A0A2H2ITH9   K7IG35   A0A016THC6   A0A2H2JCS8  

Pubmed

20470440    28756777    26334808    25730766    29023486   

EMBL

FJ265564    ADI61832.1    KZ150485    PZC70710.1    FJ265561    ADI61829.1    + More
FJ265562    ADI61830.1    FJ265563    ADI61831.1    GBGD01000380    JAC88509.1    ODYU01008249    SOQ51673.1    KZ149907    PZC78256.1    FJ265549    ADI61817.1    FJ265542    ADI61810.1    JARK01001655    EYB84321.1    MRZV01002136    PIK34564.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01000173    EYC41342.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    JARK01000732    EYC35149.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    JARK01001565    EYB89683.1    EYC16376.1    JARK01001353    EYC22263.1    DS268411    EFP03057.1    DS268591    EFO92565.1    JARK01000347    EYC38051.1    DS268581    EFO91764.1    DS268453    EFP04265.1    DS268655    EFO97114.1    DS268444    EFP01729.1    JARK01000460    EYC36749.1    JARK01001621    EYB86109.1    JARK01001340    EYC30828.1    JARK01001626    EYB85833.1    EYC31302.1    JARK01001517    EYB93530.1    JARK01001438    EYC02111.1   

Proteomes

UP000024635    UP000230750    UP000035680    UP000008281    UP000005237   

PRIDE

D7F179    D7F176    D7F177    D7F178    D7F164    D7F157    + More

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F179   A0A2W1BCS2   D7F176   D7F177   D7F178   A0A069DZM5   + More
A0A2H1WF27   A0A2W1BZV1   D7F164   D7F157   A0A016S1D2   A0A2G8JFM9   A0A016S403   A0A016U784   A0A016WPY4   A0A016WCB8   A0A016ULU9   A0A0K0FAW8   A0A016W5P9   A0A016TK11   A0A016W4R1   A0A016SG46   A0A016UN79   A0A016V6A2   E3LN61   E3NC15   A0A2H2JFN0   A0A016WEQ1   E3NB36   E3MKV4   E3NGJ2   A0A2H2IZ03   E3MH09   K7HKK6   A0A2H2JHK8   A0A016WA79   K7HC54   K7HC53   A0A016S795   A0A016VVN3   A0A016S5B2   A0A2H2JCW1   A0A2H2JKX8   K7IG36   A0A2H2JKG1   A0A016VW83   A0A016SSP6   A0A2H2ITH9   K7IG35   A0A016THC6   A0A2H2JCS8  

KEGG

105841554    no KO assigned | (RefSeq) uncharacterized LOC105841554

GO

GO:0003964   GO:0004519  

Length:

848

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0005

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  848

 

 

Pi

0.12749

Theta

0.135755

Tajima's D

0

CLR

169.914063

CSRT

0.202389880505975

Interpretation

Uncertain