Gene

KWMTBOMO11560  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004036

Annotation

vasa-like_protein_[Bombyx_mori]

Location

Bomo_Chr19(-):8046954-8056914      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.093

CDS

ATGGATGATGACTGGGATGATTCCTGTGAAGCTGTTGTGGTGCCACCTCCCCCACTACAGAACCATGATTCTGTAGATGAAGGTCACAGTCTATCCAGAGGAAGAGGATTTCCTTCCTTCAATGAGGATGATGAAAAAGAGAATGGGTATGGTGAGCGACGGGGTCGAGGTGGCCGAGGCGGAGGACGAGGACGCGGCGGAAGAGGTGGACGTGGAGGGTCACGAGAACAGCACAGCGACTATGAGACTAATGGTGACCATGATGATAGGGGTCGTGGCGAACGTGGCCGAGGCCGCGGAAGGGGAGGACGTGGTGGTGGTAGAGGTGGTGGTGGCGGAGGAGGCGATAGAAATGATTATGAAGATAATGAAATAGGGGAAAACGGGGAAACGAAGAAGCCGGTAACCTATGTGCCTCCAGAACCAACAAATGATGAGACGGAAATCTTTAGCAGTACTATAAGCTCTGGTATTAACTTTGACAAGTTTGACCATATTGCAGTAAAAGTCAGTGGTGAGAATCCTCCGAGACCTATCGAAAGTTTCGAAACTGCAAATCTCAGAAAGTATGTTTTAGATAATGTACTTAAGGCTGGTTATAGAAAACCCACACCTATTCAGAAAAATGCAATCCCAATCATAATGAGTGGCAGAGATTTGATGGGTTGTGCCCAGACTGGTTCGGGTAAAACGGCTGCTTTTTTGGTACCCATAATTAATATGTTATTACAAGATCCAAAGGATCTGATCTCAGAAAATGGCTGCGCCCAGCCACAGGTTATAATAGTATCTCCAACGCGAGAATTGACTCTTCAAATATTTAATGAAGCTAGGAAATTCTCATATGGCTCAGTTTTGAAGGTTGCAGTTGCTTATGGTGGCACTGCTGTGCGCCATCAAGGTGATAACATTGCTAGAGGCTGTCACATATTGGTAGCAACACCAGGCCGTCTTCATGATTTTGTGGAAAGGAATCGTGTATCATTTGGCAGTGTAAGATTTGTCGTACTGGATGAGGCTGACCGTATGTTAGATATGGGGTTCATGCCAAGCATTGAAAAAATGATGTTACATCCAACCATGGTGGAGACCACGAAAAGGCAAACTTTAATGTTTTCGGCAACATTCCCCGAAGACATCCAACATTTGGCTGGTCGTTTCTTAAATAATTATCTATTTGTGGCGGTTGGTATCGTCGGAGGCGCTAGCACTGACGTCGAACAAATCTTCATTGAAGTCACTAAATATGAAAAACGGAACAGTCTAAAACAACTGATTGAGGAAAATGATGGTAAAAGAATCTTGGTATTTGTCGAAACAAAACGTAATGCAGACTTCATAGCAGCCATGTTGTCGGAACAGCAATTGCTGACATCTTCAATTCACGGCGATCGCATGCAACGTGAGCGCGAGGAAGCGTTACAGAATTTTAAGAGTGGGAAACACTGTATCTTGGTTGCAACAGCTGTAGCTGCACGTGGTTTAGACATTAAAAATGTAGACATTGTAGTGAATTATGACCTCCCAAAGAGCATTGATGAGTATGTGCACAGAATAGGGCGTACTGGTCGCGTAGGAAACAGAGGAAAAGCCGTATCGTTTTATGATTCTGATCAGGATTTAGCCCTAGTGGCTGATCTTTCAAAAATACTTCGACAGGCAGATCAATCTGTCCCAGACTTCTTAAAGGGAGGTGGCACTGCTACATTCAAGGGCAATAAATATGGAGGCAGTGATGTTAGAAATTTCAACAATGCCAACACAGCTGTAGTAGATCAAGGGCAGGAACCTGAAGAAGAATGGTAG

Protein

MDDDWDDSCEAVVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKENGYGERRGRGGRGGGRGRGGRGGRGGSREQHSDYETNGDHDDRGRGERGRGRGRGGRGGGRGGGGGGGDRNDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSDQDLALVADLSKILRQADQSVPDFLKGGGTATFKGNKYGGSDVRNFNNANTAVVDQGQEPEEEW

Similarity

Belongs to the DEAD box helicase family.

Uniprot

H9J3E9   O01378   B8YJN5   B8YJN4   A0A2A4IUT6   A0A3S2TEH1   + More
A0A2W1BZ10   B6UL36   A0A2H1W9D9   A0A194QLI0   A0A194QWF8   A0A212EMJ3   A0A1Y1MXA9   B3XZZ9   A0A1B6IXN6   Q8I9N5   A0A1B6ESU8   A0A1B6EGK3   A0A0H4TGF1   A0A182GDC5   Q3ZDP2   A0A2P8ZA44   A0A1Q3EVU5   B0WPW7   U5EPE8   A0A1Q3EVV5   A0A1W4W3E6   Q2PZC2   A0A067RIM7   V5G689   A0A2P8ZHC7   A0A154NZA1   A0A2A3EJH2   A0A067QSX8   A0A151IY86   A0A158NYC2   A0A195BRL4   A0A151WKB1   B5U326   A5Z0K6   A0A195FGD4   A5Z0K7   B5U325   A0A023F685   A0A146LC24   A0A0A9X1N8   A0A0A9X560   A0A151II52   F4W9M0   A0A0J7P3P3   U4UH35   N6ULA6   A0A182MUD1   A0A182RK99   A0A310SLK7   A0A182NTB4   A0A182QWS7   A0A182J5Z8   A0A182WRW5   A0A182YPT7   A0A182V9W6   Q3ZDP1   Q7Q8K0   A0A0M4EB21   A0A0A1X226   A0A182TI88   W8BVA6   A0A1I8JSL1   A0A0Q9WZS7   A0A3L8E1P5   A0A182P4J3   A0A182VSD8   A0A026W9N4   A0A034WQ67   A0A034WLA5   M9VYC7   Q5EFR8   E9IFY3   B4KLB4   D6WSI7   B3N5P0   A0A1I8Q0E6   A0A0P8XFH0   W5JGF8   A0A1I8MQP6   T1PF43   A0A2M4BJ02   A0A084VJ98   A0A2M4BJG2   T1EAB1   E0VLL5   A0A182T677   Q8MUR7   Q29P74   A0A0R1DN58   A0A0B4J2T6   A0A2J7PJ92   M9PBB5  

Pubmed

19121390    11252184    24910301    22207176    28756777    26354079    + More
22118469    28004739    18542998    12453463    26483478    17510324    29403074    24845553    21347285    25474469    26823975    25401762    21719571    23537049    25244985    12364791    14747013    17210077    25830018    24495485    17994087    30249741    24508170    25348373    21282665    18057021    18362917    19820115    20920257    23761445    25315136    24438588    20566863    15632085    23185243    17550304    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01021455    BABH01021456    D86601    BAA19572.1    FJ542314    ACL80032.1    + More
FJ542313    ACL80031.1    NWSH01006022    PCG63737.1    RSAL01000235    RVE43768.1    KZ149917    PZC77916.1    FJ011707    ACI49632.1    ODYU01007151    SOQ49680.1    KQ458575    KPJ05795.1    KQ461073    KPJ09639.1    AGBW02013823    OWR42697.1    GEZM01021192    GEZM01021191    GEZM01021190    JAV89095.1    AB378065    BAG65665.1    GECU01016040    JAS91666.1    AF510054    AAO15914.1    GECZ01028725    JAS41044.1    GEDC01000226    JAS37072.1    KP273583    AKQ06242.1    JXUM01009872    KQ560294    KXJ83213.1    AY957502    CH477322    AAY41941.1    EAT43587.1    PYGN01000131    PSN53351.1    GFDL01015717    JAV19328.1    DS232030    EDS32555.1    GANO01000198    JAB59673.1    GFDL01015707    JAV19338.1    DQ288391    ABC41341.1    KK852482    KDR22893.1    GALX01002876    JAB65590.1    PYGN01000057    PSN55909.1    KQ434785    KZC05005.1    KZ288227    PBC31850.1    KK853579    KDR06558.1    KQ980774    KYN13265.1    ADTU01000599    KQ976423    KYM88859.1    KQ983012    KYQ48261.1    FJ161963    ACI02437.1    EF601037    ABQ96191.1    KQ981606    KYN39463.1    EF601038    ABQ96192.1    FJ161962    ACI02436.1    GBBI01001984    JAC16728.1    GDHC01013913    JAQ04716.1    GBHO01029675    JAG13929.1    GBHO01029661    JAG13943.1    KQ977516    KYN02147.1    GL888033    EGI69006.1    LBMM01000185    KMR04559.1    KB632194    ERL89891.1    APGK01028660    KB740694    ENN79477.1    AXCM01005355    KQ761221    OAD57976.1    AXCN02000717    AY957503    AAY41942.1    AAAB01008944    EAA10198.3    CP012523    ALC39714.1    GBXI01008913    JAD05379.1    GAMC01001290    JAC05266.1    CH963913    KRF98680.1    QOIP01000002    RLU25948.1    KK107321    EZA52755.1    GAKP01002612    JAC56340.1    GAKP01002611    JAC56341.1    KC261571    AGJ83330.1    AY887136    AAW78361.1    GL762905    EFZ20513.1    CH933807    EDW11775.1    KRG02907.1    KRG02908.1    KQ971354    EFA07550.1    CH954177    EDV57999.2    CH902620    KPU73666.1    KPU73667.1    ADMH02001599    ETN61894.1    KA646508    AFP61137.1    GGFJ01003843    MBW52984.1    ATLV01013476    KE524860    KFB38042.1    GGFJ01004003    MBW53144.1    GAMD01000597    JAB00994.1    DS235274    EEB14271.1    AF513908    CH940649    AAM49782.1    EDW63653.1    KRF81225.1    KRF81226.1    CH379058    EAL34419.2    KRT03491.1    CM000157    KRJ98696.1    NEVH01024950    PNF16389.1    AE014134    AGB92993.1    ALI30207.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000069940    UP000249989    UP000008820    UP000245037    UP000002320    UP000192223    UP000005203    UP000027135    UP000076502    UP000242457    UP000078492    UP000005205    UP000078540    UP000075809    UP000078541    UP000078542    UP000007755    UP000036403    UP000030742    UP000019118    UP000075883    UP000075900    UP000075884    UP000075886    UP000075880    UP000076407    UP000076408    UP000075903    UP000007062    UP000092553    UP000075902    UP000069272    UP000007798    UP000279307    UP000075885    UP000075920    UP000053097    UP000009192    UP000007266    UP000008711    UP000095300    UP000007801    UP000000673    UP000095301    UP000030765    UP000009046    UP000075901    UP000008792    UP000001819    UP000002282    UP000002358    UP000235965    UP000000803   

PRIDE

H9J3E9    O01378    B8YJN5    B8YJN4    B6UL36    M9PBB5    + More

Pfam

PF00271   Helicase_C        + More
PF00270   DEAD
PF00641   zf-RanBP
PF16087   DUF4817

Interpro

IPR027417   P-loop_NTPase        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR001876   Znf_RanBP2       
IPR036443   Znf_RanBP2_sf       
IPR032135   DUF4817       

SUPFAM

SSF52540   SSF52540        + More
SSF90209   SSF90209       

CDD

cd00079  HELICc

ProteinModelPortal

H9J3E9   O01378   B8YJN5   B8YJN4   A0A2A4IUT6   A0A3S2TEH1   + More
A0A2W1BZ10   B6UL36   A0A2H1W9D9   A0A194QLI0   A0A194QWF8   A0A212EMJ3   A0A1Y1MXA9   B3XZZ9   A0A1B6IXN6   Q8I9N5   A0A1B6ESU8   A0A1B6EGK3   A0A0H4TGF1   A0A182GDC5   Q3ZDP2   A0A2P8ZA44   A0A1Q3EVU5   B0WPW7   U5EPE8   A0A1Q3EVV5   A0A1W4W3E6   Q2PZC2   A0A067RIM7   V5G689   A0A2P8ZHC7   A0A154NZA1   A0A2A3EJH2   A0A067QSX8   A0A151IY86   A0A158NYC2   A0A195BRL4   A0A151WKB1   B5U326   A5Z0K6   A0A195FGD4   A5Z0K7   B5U325   A0A023F685   A0A146LC24   A0A0A9X1N8   A0A0A9X560   A0A151II52   F4W9M0   A0A0J7P3P3   U4UH35   N6ULA6   A0A182MUD1   A0A182RK99   A0A310SLK7   A0A182NTB4   A0A182QWS7   A0A182J5Z8   A0A182WRW5   A0A182YPT7   A0A182V9W6   Q3ZDP1   Q7Q8K0   A0A0M4EB21   A0A0A1X226   A0A182TI88   W8BVA6   A0A1I8JSL1   A0A0Q9WZS7   A0A3L8E1P5   A0A182P4J3   A0A182VSD8   A0A026W9N4   A0A034WQ67   A0A034WLA5   M9VYC7   Q5EFR8   E9IFY3   B4KLB4   D6WSI7   B3N5P0   A0A1I8Q0E6   A0A0P8XFH0   W5JGF8   A0A1I8MQP6   T1PF43   A0A2M4BJ02   A0A084VJ98   A0A2M4BJG2   T1EAB1   E0VLL5   A0A182T677   Q8MUR7   Q29P74   A0A0R1DN58   A0A0B4J2T6   A0A2J7PJ92   M9PBB5  

PDB

4D26     E-value=0,     Score=2242

KEGG

692765    K13982 probable ATP-dependent RNA helicase DDX4 [EC:3.6.4.13] | (RefSeq) Vlg, BmVLG, vas; vasa-like

GO

GO:0005524   GO:0004386   GO:0003676   GO:0046872   GO:0007076   GO:0043186   GO:0045727   GO:0003730   GO:0007293   GO:0048471   GO:0008104   GO:0061803   GO:0043073   GO:0045170   GO:0007316   GO:0004004   GO:0016887   GO:0045495   GO:0016779   GO:0003724   GO:0005737   GO:0046012   GO:0036464   GO:0007314   GO:0007315   GO:0003723   GO:0046843   GO:0046011   GO:0048477   GO:0006417   GO:0030717   GO:0008298   GO:0006412   GO:0016020   GO:0016021   GO:0004888   GO:0007166   GO:0003707   GO:0006418   GO:0003824  

Length:

601

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11441

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00294

outside

1  -  601

 

 

Pi

259.013955

Theta

201.981764

Tajima's D

0.463096

CLR

0.60497

CSRT

0.507674616269187

Interpretation

Uncertain