SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11558  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004038
Annotation
microtubule-associated_protein_RP/EB_family_member_3_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 3.103
 

Sequence

CDS
ATGCTAGCGTGGGTGAATGATTGTCTCCAGTCAAACTTTGCGAAGATCGAAGAGTTGTGTACAGGTGCCGCCTATTGCCAGTTCATGGACATGCTGTTCCCTGGCAGTGTACCAATGAAAAGAATCAAATTTAAGACAAATTTGGAACATGAATATATACAGAACTTTAAAATATTACAAGCTGGTTTTAAAAAGATGGGTGTGGACAAGATAGTACCCATTGACAAACTGGTGAAGGGTCGTTTCCAAGATAATTTTGAGTTTTTGCAATGGTTCAAGAAATTCTTTGACGCCAACTATGGAGGTGCGGCATATGACGCAGTGGCGCAGCGAGAAGGTCTGCCCATGGGGCACGGGGGCTCGGCCGCCCCGAGGGCCGCTGCCGCTAAGAAACCCGTCGCCCCTGTCGCCAAAGTCGCAGCTAGACCCCAAACCATTGGGAAAGCTAATACAACAGTCAGATCTCCACCAGTTAATTTGTCACGGATAAGTCAAAGTGCCAAGGGTGATTCGAAAGTTGTGGATGAATTAAACCATCAGATAAACGAATTGAAAGCCACAGTCGATGGATTAGAAAAAGAGAGAGACTTCTACTTCGGTAAGCTTCGGGATATAGAGGTGATCTGTCAAGAGATGGAAGAACAACACAATGCTCCTATAGTGCAAAAGATTCTTGATATTTTATATGCCACTGAGGACGGTTTTGCGCCTCCCGAGGAGATAGACGGCGACAACCCTCACCCGCCAGAAGAGGACGAATATTGA
Protein
MLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQREGLPMGHGGSAAPRAAAAKKPVAPVAKVAARPQTIGKANTTVRSPPVNLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATEDGFAPPEEIDGDNPHPPEEDEY

Summary

EMBL
DQ311352    ABD36296.1    RSAL01000235    RVE43763.1    AK401339    BAM17961.1    + More
GAIX01003243    JAA89317.1    AGBW02008244    OWR53965.1    JTDY01002400    KOB71490.1    KK852779    KDR16685.1    GEDC01018804    GEDC01018248    GEDC01010003    JAS18494.1    JAS19050.1    JAS27295.1    AAZX01001624    GEZM01044942    GEZM01044940    GEZM01044938    JAV78027.1    LBMM01000625    KMQ97945.1    NEVH01025130    PNF15956.1    KQ971352    EFA06785.2    GEZM01044943    GEZM01044941    GEZM01044939    JAV78026.1    BABH01021452    LJIG01016026    KRT81837.1    AY071380    AE013599    AAL49002.1    AAM70826.1    AAM70827.1    AAM70828.1    AGB93267.1    BT120169    ADB91417.1    CM002911    KMY91801.1    KMY91804.1    AF132560    AAD27859.1    AAS64780.1    CM000071    KRT01496.1    GDHF01032970    JAI19344.1    GAKP01012747    JAC46205.1    GBYB01010820    JAG80587.1    GBXI01004139    JAD10153.1    KMY91805.1    JR050101    AEY61177.1    GAMC01018166    JAB88389.1    GEBQ01022363    JAT17614.1    GEBQ01032157    JAT07820.1    CH963894    EDW77035.2    KRF98562.1    CH954177    KQS71000.1    QOIP01000006    RLU21747.1    KA649423    AFP64052.1    OUUW01000001    SPP73036.1    GDHF01005094    JAI47220.1    GAKP01012748    GAKP01012744    JAC46208.1    SPP73035.1    CM000157    KRJ98168.1    KQS71003.1    GBXI01015566    JAC98725.1    KRJ98170.1    GECL01001086    JAP05038.1    ODYU01013163    SOQ59856.1    CH902619    KPU77285.1    CH940648    KRF80129.1    GFDF01003058    JAV11026.1    KQS71004.1    KRF80136.1    AAAB01008905    EDO64030.1    KRJ98166.1    CH933808    KRG04364.1    GBBI01000308    JAC18404.1    KRT01497.1    GDAI01002070    JAI15533.1    GGFM01001913    MBW22664.1    AK340324    BAH70954.1    KK121168    KFM79906.1    GALX01003873    JAB64593.1    GALA01000966    JAA93886.1    KRG04372.1    GGFK01003469    MBW36790.1    GGFK01003403    MBW36724.1    GGFL01002085    MBW66263.1    EF070578    ABM55644.1    KRG04370.1    ADMH02002184    ETN57962.1    GDIP01110258    LRGB01003216    JAL93456.1    KZS03716.1    KQS71007.1    BT127076    AEE62038.1    IAAA01000742    LAA03220.1    GDIP01108258    JAL95456.1    GALX01003872    JAB64594.1    KRJ98167.1    GFAA01000661    JAU02774.1    GBZX01001654    JAG91086.1    GBBK01003211    JAC21271.1    GFPF01009790    MAA20936.1    GEDV01008494    JAP80063.1    GACK01005596    JAA59438.1    GEBQ01027317    JAT12660.1    GBBM01002015    JAC33403.1    JO844279    AEO35896.1    GEBQ01013534    JAT26443.1    GDHF01003930    JAI48384.1    GDIP01225692    JAI97709.1    GDIP01254518    JAI68883.1    GDIQ01081768    JAN12969.1    GGFK01003812    MBW37133.1    GDIQ01181779    JAK69946.1    GDIP01105703    JAL98011.1    GEFH01003538    JAP65043.1   
Pfam
PF03271   EB1        + More
PF00307   CH
PF01039   Carboxyl_trans
Interpro
IPR036133   EB1_C_sf        + More
IPR027738   EB3       
IPR036872   CH_dom_sf       
IPR001715   CH-domain       
IPR042180   IF_rod_dom_coil1B       
IPR004953   EB1_C       
IPR027328   MAPRE       
IPR033469   CYTH-like_dom_sf       
IPR027739   EB1_Meta       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR034733   AcCoA_carboxyl       
SUPFAM
SSF140612   SSF140612        + More
SSF47576   SSF47576       
SSF55154   SSF55154       
SSF52096   SSF52096       
Gene 3D
PDB
2R8U     E-value=6.40808e-69,     Score=660

Ontologies

Topology

Length:
254
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0563100000000001
Exp number, first 60 AAs:
0.05613
Total prob of N-in:
0.04057
outside
1  -  254
 
 

Population Genetic Test Statistics

Pi
180.989409
Theta
167.99146
Tajima's D
0.192973
CLR
0.049129
CSRT
0.426578671066447
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 IQYIIK 95.45 1e-08
27102218 SSSSSYVVEIVDGK 95.45 1e-08
27102218 VVDEINHQINEIK 100.00 2e-07
26822097 AVNVYSTNVTSENISR 100.00 2e-06
26280517 KFDVNTSAIQVIIEQVKDIER 100.00 2e-06
25044914 KFEQIK 100.00 2e-06
28467696 KFEECISQSAVR 100.00 2e-06
26822097 FIETYGH 100.00 5e-06
26280517 FEVCDIPVRSAK 100.00 5e-06
25044914 FFDAIGSGNK 100.00 5e-06
27102218 TNIEHEYIQNFK 100.00 5e-06
28467696 FFDAIGSGNK 100.00 5e-06
28556443 FFDANYGGAAYDAVAQR 100.00 5e-06
28556443 EGLPMGHGGSAAPR 100.00 5e-06
28556443 QKEQLANLK 100.00 5e-06
28556443 TNLEHEYIQNFK 100.00 0.033
28556443 TNLEHEYIQNFK 100.00 0.033
28556443 FFDANYGGAAYDAVAQR 100.00 0.036
28556443 FFDANYGGAAYDAVAQR 100.00 0.036
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