Gene

KWMTBOMO11556  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004039

Annotation

PREDICTED:_probable_RNA-binding_protein_CG14230_[Amyelois_transitella]

Location

Bomo_Chr19(-):7995011-8011304      View in EpiBrowser

Full name

Probable RNA-binding protein CG14230      

Location in the cell

Nuclear   Reliability : 4.797

CDS

ATGTCTCCAGGAACAAGATTATTTGTTAGTAATATTCCCGAAAACACAAATGAAGATGAGTTACGATGTGCATTTTCTAAATTTGGTAAAGTGAACAGTTTAGATTTAAAGTGCAAAAGCTCTATAGAAGAGAACAAAACTTTCGCTTTTATAACTCTAAGTGCTTCAAACTACGATATTGAGTCATGTATAAAATGTTTTACATCTGAGGAGTTTAAGGGCAGCAGATTGTATGTAACTAGAGCTCGTGAAAGTTTTCTTGAAAGACTACAAAGAGAAAGGAATGAAGCACAAAGAAAGGAAACAGAAAAGGAACAGCAGCATGAGACTATACCCAACCAAAATCCAATCATTAATTTGAGTGAAAAATTGAATCCAAGAAAGAGAAAATTTGAAAGTCATGTAGTCAACACATACTCGGATACAGAACAGCAGCATGAGACTATACCCAACCAAAATCCAATCATTAATTTGAGTGAAAAATTGAATCCAAGAAAGAGAAAATTTGAAAGTCATGTAGTCAACACATACTCGGATACAGAAAAGAAGCGGTTGGAAGCCATGAAGCAGAAAAGGCAAGAGTTTAAGCAAAAACAAATGATAATCAAAACTGGGCTTTCTGCAGTGGATAAACTACCAAACAAAAAAGTGAAATTTTCCGATGAAGATAGTTCTATTTTGGTTAATGATTTTGAAGATGGAAAAACGCATGAAAAAAAGTTGGGACACCCACCTGAAAATAAAAATTTTTTGTTTGATGATGAAGACGATGATGATGCTGATGGTCAGGAGCATATCAACTTTGAAATAAAAAAACAGTTTGAAGGAAAAAGAGGACAAATGGTTCTGGATCTACAATCAAGATACAAATCAGATAAACGTTTCACATTAGATGAGAGATTTGTTGATGACGAAACAATTGGTGACAAAACTAAAGATGAAGAAGTGGAATTATCACAAGTTGACGAGAAAACAAAGCAGTTGAACATTTTACAAAATGTCCTTGGTGTTACTCTTAAAAGTATAGAACCTGAACAAGATAGTCAGAAACCAAAGCCAAAATTAGGAATGTTGAGATTTGATCCTCTTCAACCAAGTCATGCAAAATTTTTAATGCAGCAAGCCGAAGATGTAAAAACTGAACCAGTGAATAAAAAAAAAAAGAAAAAGGACAAGCTGAATGAGAATCAAAATAAACAAGAACATTTAGAACAATCACAAGAGAACAAGATAGAAGTGTCCAAGGAAACCTTCTATAAAGTTAGCGAAACACTGAAAGAGACTATTGCACAACCTAAAACATTTAGCTTGAGAAGTTTGTTCACTAAAGATGCAGAACAAGATGAAGCACCTCAACAAGAAACAGAATATATACCACTTGATGTTCCAAAGAAGAAAAAAGGGAATCCTTTAGACCCTGGAGAAAAGAATCCATTTATTTATGATTCATCAGATTCGGAACACGAAGAAGAGGTGAACGAGAAGGAAACTGAGTCATTGCCTGTGCCCACAGAAGCTAAAGCTGTTTGGAAAGAAAATCTATTCTTCACAAAGCAAGATCAACGACTGCTAGATGGTTTGAAATTCTTTAATACAACTGGAGACACAGAAGGTCAAAAAGATAGAAGAGAGCTTAAATCATTGATGAAGAGACGAATTTACAACAAAGAGAGGAAAAATCAAATGTTCCACAAAAAAATTGGTGGTAGAAGAAAAACTATGAAGAAATCCTATAGGAAACAAAACTAG

Protein

MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEKKRLEAMKQKRQEFKQKQMIIKTGLSAVDKLPNKKVKFSDEDSSILVNDFEDGKTHEKKLGHPPENKNFLFDDEDDDDADGQEHINFEIKKQFEGKRGQMVLDLQSRYKSDKRFTLDERFVDDETIGDKTKDEEVELSQVDEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTEPVNKKKKKKDKLNENQNKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYIPLDVPKKKKGNPLDPGEKNPFIYDSSDSEHEEEVNEKETESLPVPTEAKAVWKENLFFTKQDQRLLDGLKFFNTTGDTEGQKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRKQN

Keywords

Complete proteome   Phosphoprotein   Reference proteome   RNA-binding  

Feature

chain  Probable RNA-binding protein CG14230

Uniprot

A0A2W1BU88   A0A1E1WSZ3   A0A1E1W5B3   A0A2A4JLV8   A0A194QLH7   A0A3S2LTS3   + More
A0A212FJP6   A0A2H1VMP9   A0A0L7LJY4   A0A0L7LVA1   N6TWQ0   A0A1Y1M410   U4ULT0   A0A1W4XE70   A0A1W4XDV1   A0A1W4XPA3   A0A0K8W9J4   A0A0A1WHS3   A0A2M4BH23   A0A2M4BHS8   W8BL28   A0A034W4N0   A0A1I8P8R6   A0A182FSA6   A0A182YQ14   A0A336K326   A0A2J7PZL5   A0A336KBS5   A0A182NQN4   A0A182L8N2   A0A1L8DFK2   B3MQN0   A0A0L0CL17   A0A1A9WDQ0   Q7PX78   A0A1W4VUV5   A0A182X9G8   Q16PE9   Q29HY0   A0A1I8MBP1   A0A1B6KRD7   A0A0M3QZK2   A0A1Y9IVJ0   A0A1A9VRC6   A0A1A9XCU8   A0A2C9GQH6   B4NQ68   A0A182PRS0   A0A1B0BB58   A0A1S4FTY8   A0A3B0KNI2   B4PZD2   A0A0P6IU62   B4JJH8   A0A1B0FME5   Q9VWD4   B4R7S8   B4MAR5   B7PBG9   B4L802   B4H4Q3   J9K166   B3NVT1   A0A1B0A068   A0A195C1Y8   A0A158NL90   A0A2M4AT07   A0A2S2R2U7   A0A026VYP2   A0A2S2PT66  

Pubmed

28756777    26354079    22118469    26227816    23537049    28004739    + More
25830018    24495485    25348373    25244985    20966253    17994087    26108605    12364791    14747013    17210077    17510324    15632085    25315136    17550304    26999592    10731132    12537572    17372656    18327897    21347285    24508170    30249741   

EMBL

KZ149917    PZC77911.1    GDQN01000997    JAT90057.1    GDQN01008888    JAT82166.1    + More
NWSH01001023    PCG73065.1    KQ458575    KPJ05790.1    RSAL01000235    RVE43761.1    AGBW02008244    OWR53963.1    ODYU01003397    SOQ42101.1    JTDY01000859    KOB75649.1    JTDY01000011    KOB79443.1    APGK01052270    KB741211    ENN72821.1    GEZM01041689    GEZM01041681    JAV80221.1    KB632263    ERL90955.1    GDHF01004587    JAI47727.1    GBXI01016359    JAC97932.1    GGFJ01003218    MBW52359.1    GGFJ01003217    MBW52358.1    GAMC01007098    JAB99457.1    GAKP01008391    JAC50561.1    UFQS01000028    UFQT01000028    SSW97795.1    SSX18181.1    NEVH01020333    PNF21777.1    UFQS01000131    UFQT01000131    SSX00243.1    SSX20623.1    GFDF01008851    JAV05233.1    CH902621    EDV44656.1    JRES01000256    KNC32922.1    AAAB01008987    EAA01757.5    CH477784    EAT36251.1    CH379064    EAL31627.2    GEBQ01025974    JAT14003.1    CP012528    ALC49563.1    APCN01000826    CH964291    EDW86293.1    JXJN01011306    OUUW01000011    SPP86711.1    CM000162    EDX02088.1    GDUN01000640    JAN95279.1    CH916370    EDV99730.1    CCAG010005910    AE014298    CM000366    EDX18411.1    CH940655    EDW66324.2    ABJB010003604    ABJB010407891    ABJB010601577    ABJB010644985    ABJB010707073    DS676064    EEC03941.1    CH933814    EDW05577.1    CH479209    EDW32665.1    ABLF02034733    ABLF02034735    CH954180    EDV46746.1    KQ978344    KYM94889.1    ADTU01002141    GGFK01010579    MBW43900.1    GGMS01015115    MBY84318.1    KK107570    QOIP01000005    EZA48780.1    RLU22635.1    GGMR01020041    MBY32660.1   

Proteomes

UP000218220    UP000053268    UP000283053    UP000007151    UP000037510    UP000019118    + More
UP000030742    UP000192223    UP000095300    UP000069272    UP000076408    UP000235965    UP000075884    UP000075882    UP000007801    UP000037069    UP000091820    UP000007062    UP000192221    UP000076407    UP000008820    UP000001819    UP000095301    UP000092553    UP000075920    UP000078200    UP000092443    UP000075840    UP000007798    UP000075885    UP000092460    UP000268350    UP000002282    UP000001070    UP000092444    UP000000803    UP000000304    UP000008792    UP000001555    UP000009192    UP000008744    UP000007819    UP000008711    UP000092445    UP000078542    UP000005205    UP000053097    UP000279307   

PRIDE

Q9VWD4    B7PBG9   

Pfam

PF00076   RRM_1        + More
PF04389   Peptidase_M28
PF02225   PA

Interpro

IPR035979   RBD_domain_sf        + More
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR018940   EF-1_beta_acid_region_euk       
IPR007484   Peptidase_M28       
IPR039866   CPQ       
IPR034138   NOP8_RRM       
IPR003137   PA_domain       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12226  RRM_NOL8

ProteinModelPortal

A0A2W1BU88   A0A1E1WSZ3   A0A1E1W5B3   A0A2A4JLV8   A0A194QLH7   A0A3S2LTS3   + More
A0A212FJP6   A0A2H1VMP9   A0A0L7LJY4   A0A0L7LVA1   N6TWQ0   A0A1Y1M410   U4ULT0   A0A1W4XE70   A0A1W4XDV1   A0A1W4XPA3   A0A0K8W9J4   A0A0A1WHS3   A0A2M4BH23   A0A2M4BHS8   W8BL28   A0A034W4N0   A0A1I8P8R6   A0A182FSA6   A0A182YQ14   A0A336K326   A0A2J7PZL5   A0A336KBS5   A0A182NQN4   A0A182L8N2   A0A1L8DFK2   B3MQN0   A0A0L0CL17   A0A1A9WDQ0   Q7PX78   A0A1W4VUV5   A0A182X9G8   Q16PE9   Q29HY0   A0A1I8MBP1   A0A1B6KRD7   A0A0M3QZK2   A0A1Y9IVJ0   A0A1A9VRC6   A0A1A9XCU8   A0A2C9GQH6   B4NQ68   A0A182PRS0   A0A1B0BB58   A0A1S4FTY8   A0A3B0KNI2   B4PZD2   A0A0P6IU62   B4JJH8   A0A1B0FME5   Q9VWD4   B4R7S8   B4MAR5   B7PBG9   B4L802   B4H4Q3   J9K166   B3NVT1   A0A1B0A068   A0A195C1Y8   A0A158NL90   A0A2M4AT07   A0A2S2R2U7   A0A026VYP2   A0A2S2PT66  

PDB

2JRS     E-value=0.0246532,     Score=90

KEGG

101745940    no KO assigned | (RefSeq) probable RNA-binding protein CG14230

GO

GO:0003723   GO:0030246   GO:0070573   GO:0003729   GO:0000166   GO:0003676   GO:0006412   GO:0016020   GO:0016021   GO:0004888   GO:0007166   GO:0003707   GO:0006418   GO:0003824  

PANTHER

PTHR12053:SF3  

Length:

582

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00069

outside

1  -  582

 

 

Pi

274.888804

Theta

173.708005

Tajima's D

1.052154

CLR

0.160935

CSRT

0.669316534173291

Interpretation

Uncertain