Silkworm Genome Informatics Database

Gene

KWMTBOMO11543

Annotation

tRNA_5-methylaminomethyl-2-thiouridine_biosynthesis_bifunctional_protein_MnmC_[Operophtera_brumata]

Location

Bomo_Chr19(+):7907565-7908336 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.792 PlasmaMembrane Reliability : 1.139

CDS

ATGAGTTTTTATATCGGTGGTTTTATATGCGCTCTTGTATTGGCCGCACTGGTCATCGTTTGGATAGCCTACTGCATGTTCATAAGGGAACGTGCGAAGTCAGAAGACCTTCAATACACAATATCGGACATACAGCATAGGAACTATCTGTTCTCTCAAGAGCAAGAAACTCCGGTGAAAGAGAAGAAGCTGACTGCGGGAATTTTCGTGTTGCCTTCGCGCCATAAGCAAACCGAGGACGATTACCGCAACAGACCGGATTACCCTGAGAGTCCGCTGCCGATATCACAGCCGAGCACAGATAAATTAATAGAAATCCTTAATGAGGATCCTAATGTTCATTACATGGACGGTATATGCGAAGACAGCTCTAGAACGCCATATCACAGCGATGTATAA

Protein

MSFYIGGFICALVLAALVIVWIAYCMFIRERAKSEDLQYTISDIQHRNYLFSQEQETPVKEKKLTAGIFVLPSRHKQTEDDYRNRPDYPESPLPISQPSTDKLIEILNEDPNVHYMDGICEDSSRTPYHSDV

Uniprot

A0A2A4IYG9 A0A2W1BS59 A0A0L7LHQ5 A0A2H1VEV0 A0A1E1WMZ6 A0A1E1WGS5 + More
A0A194QK66 A0A194R1D8

Pubmed

28756777 26227816 26354079

EMBL

NWSH01005431 PCG64220.1 KZ149917 PZC77888.1 JTDY01001066 KOB74982.1 + More
ODYU01002202 SOQ39390.1 GDQN01002757 JAT88297.1 GDQN01004938 JAT86116.1 KQ458575 KPJ05769.1 KQ461073 KPJ09661.1

Proteomes

UP000218220 UP000037510 UP000053268 UP000053240

ProteinModelPortal

A0A2A4IYG9 A0A2W1BS59 A0A0L7LHQ5 A0A2H1VEV0 A0A1E1WMZ6 A0A1E1WGS5 + More
A0A194QK66 A0A194R1D8

KEGG

101744206 no KO assigned | (RefSeq) uncharacterized LOC101744206

GO

GO:0016021

Length:

132

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.89991

Exp number, first 60 AAs:

21.89991

Total prob of N-in:

0.20048

POSSIBLE N-term signal

sequence

outside

1 - 4

TMhelix

5 - 27

inside

28 - 132

Pi

132.667927

Theta

166.195205

Tajima's D

-0.624796

CLR

52.223044

CSRT

0.218889055547223

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics