SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11521
Annotation
PREDICTED:_DNA-directed_RNA_polymerase_II_subunit_RPB1-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.352
 

Sequence

CDS
ATGGCACATAGTCCAGGTAGTCCGGTGGAATCTCCGCAGGGTGACTACAGTTTACACCAAACGCTACTGCAACCCTTCGAACAAATCACGATGTTGGATCAACCAGTGACGAATTACAACACGACGTACCTAAATCACAGTTCGCCGCATTCACCGCAGACGACGAACACGCAGCATACGTACACTCAGTCATCGCAGAGCAACGATTGCCGGCGCGGGGCTCGCGACCCGGTGGCGGGGGGATTCCCGGCGCTGCAGCCCCTCGCGTCCCCCTCCGCGCCCCCCACACCCGCCACGCCCGCCAGCATACCCGACATCATACTCACCGGTACGTCCGACGAACGATGTACTCCTGACGAGTCCTACTACGACCTGGTGACTCGGATCCTGGGGTATCATTTTTACTAA
Protein
MAHSPGSPVESPQGDYSLHQTLLQPFEQITMLDQPVTNYNTTYLNHSSPHSPQTTNTQHTYTQSSQSNDCRRGARDPVAGGFPALQPLASPSAPPTPATPASIPDIILTGTSDERCTPDESYYDLVTRILGYHFY

Summary

Pfam
PF12884   TORC_N        + More
PF12886   TORC_C
Interpro
IPR024783   TORC_N        + More
IPR024785   TORC_C       
IPR024786   TORC       

Ontologies

Topology

Length:
135
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00016
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05105
outside
1  -  135
 
 

Population Genetic Test Statistics

Pi
153.338871
Theta
16.682576
Tajima's D
-2.360134
CLR
1259.24255
CSRT
0.00194990250487476
Interpretation
Uncertain
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