Gene

KWMTBOMO11518

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr19(-):7624960-7630104      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.622 Nuclear   Reliability : 1.145

CDS

ATGACCGCTACCAAGAGGCAGCAGGCACTCGTGGGGCCACGGGAGCTGGCTGGAAACTTCAGCCTGGACGAGGTCATCACTCGCACCGTCCAGGTTGTATTGGAAAGGCTGGACGGCAGGCTGGCGGCCCTCGAGGCGCAACTCATTGCCCCGGCTGACGCACGGCGACCGGCACATGCAGCAGTGTTGGGTGCTCCAGCCGCCCACCCCGCCCCCGTACAGACTCCAGCCACTAGGTTGGGCCCGGGACGGGATAGAACAAAGCGGGGGGGCGGCGCCAACGCGAAACGCCCATCGCAAGCACCCCAGCCCCGTCCGCTGCCTCCGCCCCCATCCAACATGGACGAGGGGTGGAACGTGGTGGCCCGGCGGGGTGCCAAGAAGGTCCCACTGGCAGCTCCACAAGTGGGTGAAGCGCCGGCGGCCACGGCGGCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTAGCCGCCAAAAAGAAAAACAAGAAAACAAAGAAGCCACCGCGCGCGCCGCGGTCGGCGGCAGTGGTCCTAACGCTGCTGCCGGCTGCCAAAGCCAAGGGCATGACATACGGAGATGTCATTGCTCGGGCGCGCGCGGCAGTCGATCTGAATGAGATCGGGGCGGGGGAGGGTCTCCGCTCTAGGCAGACAGCCAATGGGGCCAAACTGCTAGAGTGTTCCGGTGCTGATAGTCCCGGCATCGCAGAGCGTCTGGCCGCAAGGCTCCGCGCGGTCCTGCCTGAAGAGGAGGTGCGGGTGCATAGGCCGGTCAAGATGGCCGAATTGAAAGTGACCGGCCTGGACGAATGCACCACCAGGGATGAGGTGGTGGCGGCCGTCGCTTCCCAAGGCAACTGTGCCCTGCAGAATATAACCGTAGGCGAGCTGCGTCCCGGTTATAGCGGGGCCAGCTCTGTGTGGGTACGTTGCCCGGTGGAGGCGGCCGTCGCCCTGGCTGCTCCTCCGCCCGGGAGACCTTTGGGGGATCCGGGTAGGTTGCGCGTGGGCTGGATAGCAGCCCACGTGCGCCTGCTAGAACCACGCGCCTGGCGGTGCCTAAAGTGCTTCAGCACTGGGCACTGCCTCGCCAGGTGCGTAAGTGCGGTTGACCGCAGCGGACTGTGTTTCCGCTGTGGTCAGCCTGGACACAAGGCGGCCGTGTGCTCGGCTGCGCCGCATTGCTTATTGTGTGCGGCGGCCGGACGCAGGGCTGACCACCGGACCGGGGGCAAGGCATGCCCCCCAGCCGGCAAAAACGCAATCAGAAATTGGCGCCGCCAAGCTAAGCGGCGCCAAAAGAAGCTGTCGGCCGGGGGAGCACCGGCCGGCACTTTGGCCCCCGCTGAGGCGTTCGCGCCCGATAGCGGGGACAATGGAAAGATCCGCGATGATTCCCCCCTGGCGATGGTGACCAGGGGTCCCGGGATCGTCGCGGTACAATTAGAAAATACCGTCGTGATCGGGGTGTACTTCTCTCCGAATCGGCCTACCGTCGAGTTCGAGCGGTTCCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCTCTCCCCGTTCCGTGATACTGGCGGGGGACTTCAATGCGAAGTCTGTCTCTTGGGGTTCCCCATCTACGGACGCTCGTGGTAGGCTGTTGGAGGAGTGGGCGGTCGCGGCCGATCTCTGTATCGTTAACAGGGGCTCAGTCGCGACATGCGTGCGGTGGACAGGAGAGTCTATTGTGGACTTGACGTTCGCGAGCTCGTCCGTCGCACAGCGCATCCTCGGCTGGGGCGTGGTGGTGGGGGCGGAATCGTTGTCAGATCACCGGTATATCCGGTTCGATCTTTCCGCTCCCACGCCAACACCAGCCGCAGGCGCTCGCGGGGTTAACCCCCCGCGGAGTGCATCCCGGTCATTCCCTAGGTGGGCATTGAAGCTCCTGAAGAAGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCGTGGACGCCCACGCGCCCACACCCTTTCGACGTGGAGGCCGAGGCCGAATGGTTCCGCGGCGCGATGCACCGCATATGCGATGCCTCGATGCCCCGGGTCGGCTCTCGGCATTGCGGACGGCGGCAGTCTCCCTGGTGGTCGCCTGAAATTGCGAGACTGCGCGCGGTCTCCATTCGGGCGAGCCGCCAATGCGCTAGACACCGCCGTCGCCGCCACCTGCGGCGCGACGACCCCGTCGCGTTTGCGGAGGAGGAAACCCGGCTGCACGGCGAATATCGCGCTGCGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGCGGATCCATGGGGGAGCCCGTACAGGTTAGTGCGCGGCAAGCTGCGCCCGTGGGCCCCCCCTATGACTGAGCGACTCCAGCCTCAACAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGAGGGTTTTGTTCCCCCCGCTATGGGTGAGCCGTCGGACGCCATCGACGGTGAAGCCCCTGCTGAGGTGCCCCGTATTACTGGGGCAGAGCTCCGTGTGGCGGTTGTAAGGATGACTGCAAAGGACACGGCCCCCGGCCCGGACGGAGTCCATGGCCGGGTGCTGGCCTTGGCCCTCGATGCCCTAGGGGACCGGCTCCTGGAGCTATTTAATAGTTGCCTGGAGTCGGGACGGTTCCCGTTGCTCTGGCGGACGGGCAGACTTGTGTTGTTGCGGAAGGAGGGGCGCCCGGTGGATACAGCTGCCGGGTATCGTCCTATCGTACTGCTGGACGAGGCGGGAAAATTGCTGGAGCGTATTCTGGCTGCCCGCATCGTTCAGCACCTGGTCGGGGTTGGACCTGACCTGTCGGCGGAGCAGTTCGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCAATACTTCGGGTGCGGGCCCTCTCGGACGAGGCTGTCTCACGGGGTGGGGTGGCGCTGGCGGTGTCTCTTGACATCGCCAACGCATTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCACTGGAGAGGCATGGAGTGCCCCTCTACCTCCGCCGGCTGGTTGGCTCCTATTTGGAGGCCAGGTCGGTCGAATGTACCGGGTACGGTGGGACCCTTCACCGTTTTCCGGTCGTGCGGGGTGTTCCGCAGGGGTCGGTTCTCGGACCCCTCTTGTGGAACATCGGGTACGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGATGATTATAGAGAGGGTCGGGGTGCAGTTGAGGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCTTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGAGGACAGCCGGTTCTTTGAGCCGACTGCTCCCGAATATCGGGGGGCCGGATCAGGCTGTGCGCCGCCTCTACGCAGGGGTGGTGCGATCGATGGCCCTGTACGGTGCGCCTGTATGGGCTGAGCCACGCAACCGGGCCGCTATGGCTCGGTTCCTGCGCCGGCCGCAGCGCACCGTTGCTATCAGGGTCATCCGTGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTGTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCTGGGCGTGGTGCGTCCCTCCAAAAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAATCGTGGTCGAGGCGGTTGGCCAACCCCACGTGGGGTCTACGGACCGTTGAGGCGGTTTACCCAGTCTTTGATGACTGGGTGAATCGTGGCCGAGGACGCCTCACCTTCCGTCTGGTGCAGGTGCTGACTGGGCACGGATGCTTCGGAAAGTATCTGCACCGGATAGGAGCTGAGCCGACGACGAGGTGCCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCGGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCGGTGACGAGTCCTGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGCAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCTCGTCCGTAACCCGGCCCCCTAA

Protein

MTATKRQQALVGPRELAGNFSLDEVITRTVQVVLERLDGRLAALEAQLIAPADARRPAHAAVLGAPAAHPAPVQTPATRLGPGRDRTKRGGGANAKRPSQAPQPRPLPPPPSNMDEGWNVVARRGAKKVPLAAPQVGEAPAATAAQAAPQQGRAPVAAKKKNKKTKKPPRAPRSAAVVLTLLPAAKAKGMTYGDVIARARAAVDLNEIGAGEGLRSRQTANGAKLLECSGADSPGIAERLAARLRAVLPEEEVRVHRPVKMAELKVTGLDECTTRDEVVAAVASQGNCALQNITVGELRPGYSGASSVWVRCPVEAAVALAAPPPGRPLGDPGRLRVGWIAAHVRLLEPRAWRCLKCFSTGHCLARCVSAVDRSGLCFRCGQPGHKAAVCSAAPHCLLCAAAGRRADHRTGGKACPPAGKNAIRNWRRQAKRRQKKLSAGGAPAGTLAPAEAFAPDSGDNGKIRDDSPLAMVTRGPGIVAVQLENTVVIGVYFSPNRPTVEFERFLDGLEVIARHLSPRSVILAGDFNAKSVSWGSPSTDARGRLLEEWAVAADLCIVNRGSVATCVRWTGESIVDLTFASSSVAQRILGWGVVVGAESLSDHRYIRFDLSAPTPTPAAGARGVNPPRSASRSFPRWALKLLKKELLVEASMVAAWTPTRPHPFDVEAEAEWFRGAMHRICDASMPRVGSRHCGRRQSPWWSPEIARLRAVSIRASRQCARHRRRRHLRRDDPVAFAEEETRLHGEYRAAKDALRLAIRRAKEQNMERLLEALEADPWGSPYRLVRGKLRPWAPPMTERLQPQQLRDIVSALFPQEREGFVPPAMGEPSDAIDGEAPAEVPRITGAELRVAVVRMTAKDTAPGPDGVHGRVLALALDALGDRLLELFNSCLESGRFPLLWRTGRLVLLRKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVQHLVGVGPDLSAEQFGFREGRSTVDAILRVRALSDEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEARSVECTGYGGTLHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGMIIERVGVQLRYLGLVLDSRWAFRAHFAELVPRLMRTAGSLSRLLPNIGGPDQAVRRLYAGVVRSMALYGAPVWAEPRNRAAMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRALGVVRPSKSELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGRGRLTFRLVQVLTGHGCFGKYLHRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGGDESWKAMLDFCECTISQKEAAGRVRQSSPHYAETRRRRAGGRDRGLVRNPAP

Uniprot

A0A2W1C3J5   A0A0J7KQK3   A0A0J7N0R3   A0A0J7NFZ0   A0A0J7KFH2   A0A0J7KRB8   + More
A0A3S2LNH8   A0A0J7KIS5   A0A0J7KYD2   X1WZ64   A0A0J7KF91   J9KM84   J9JWJ3   J9KJG8   X1WJY4   A0A2S2PRL8   J9K6F0   J9KNN8   J9KWM9   A0A2H8TR36   J9L0J0   J9LA43   J9LQQ1   J9M6A5  

Pubmed

28756777   

EMBL

KZ149896    PZC78733.1    LBMM01004272    KMQ92618.1    LBMM01012412    KMQ86235.1    + More
LBMM01005474    KMQ91485.1    LBMM01008278    KMQ89009.1    LBMM01003988    KMQ92922.1    RSAL01003504    RVE40273.1    LBMM01006977    KMQ90149.1    LBMM01002052    KMQ95336.1    ABLF02011183    ABLF02041884    LBMM01008445    KMQ88871.1    ABLF02018942    ABLF02041885    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02041886    ABLF02011238    GGMR01019493    MBY32112.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    ABLF02023257    ABLF02011927    GFXV01003903    MBW15708.1    ABLF02027248    ABLF02018098    ABLF02030663    ABLF02041312    ABLF02020969   

Proteomes

UP000036403    UP000283053    UP000007819   

Pfam

PF01553   Acyltransferase        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF01421   Reprolysin
PF00098   zf-CCHC
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR002123   Plipid/glycerol_acylTrfase       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.40.390.10     3.30.420.10    

ProteinModelPortal

A0A2W1C3J5   A0A0J7KQK3   A0A0J7N0R3   A0A0J7NFZ0   A0A0J7KFH2   A0A0J7KRB8   + More
A0A3S2LNH8   A0A0J7KIS5   A0A0J7KYD2   X1WZ64   A0A0J7KF91   J9KM84   J9JWJ3   J9KJG8   X1WJY4   A0A2S2PRL8   J9K6F0   J9KNN8   J9KWM9   A0A2H8TR36   J9L0J0   J9LA43   J9LQQ1   J9M6A5  

PDB

1WDU     E-value=1.68603e-09,     Score=155

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0003964   GO:0004523   GO:0000413   GO:0016020   GO:0004888   GO:0007166   GO:0003707   GO:0006418   GO:0003824  

Length:

1416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0761999999999995

Exp number, first 60 AAs:

0.0005

Total prob of N-in:

0.00333

outside

1  -  1416

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.925507

CSRT

0

Interpretation

Uncertain