SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11515  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004054
Annotation
PREDICTED:_maspardin-like_[Amyelois_transitella]
Full name
Maspardin      
Alternative Name
Spastic paraplegia 21 autosomal recessive Mast syndrome protein homolog
Location in the cell
PlasmaMembrane   Reliability : 1.585
 

Sequence

CDS
ATGAGTTGTGCTAGCGAATTATCTCAGTCGCATGAGTATCTAAGTTTCCGAAGCAGCATTCCTTTAAGAAAAATCGTAGTAGACTCGGATAATTCCAAGGCATGGAAAATATTTGATAGTGGACCAAGGTCAGTTGCATGTCCTTTAATATGTTTACCTCCAGTTTCTGGAACAGCTGATATTTATTACAAGCAAGTTATGGGCCTAGCATCACGAGGCGTTCGAGTCATATCTGCAGAGGCTCCTCCTTATTGGAATTTAAAAGAATGGTGTGATGGTTTCAAAAGACTCATTGATATATTAGAGCTTGGTAAAGTGCACATATTCGGAGCATCTTTAGGAGGATTCATAGCCCAAAAATTTGCAGAACTGACCAGAAATTTTCCTCGTGTCGCATCACTTGTTCTGTGTAACACATTTGCGGATACGTCTGTTTTTGAATACAATGACTCAGCAGCATTATTTTGGTTACTTCCATCACTAGTTTTGAAAAGAATGTTAATGGGAAATTTTACTACTGACAAAGTCGATACACGTATGGCCGAGTCAATTGATTTTATGGTTGAAAAGCTAGAAACTCTGACGCAATCAGAATTAGCATCTAGATTGACATTGAACTGCACTCCGAATTATGTGCAACCACATTTATTAAGCGACATTCCAGTTACGATTATGGATGTTTGGGACGAAAGTGCACTTAGTTCACACGTACGTGAAGATTTGTATAAATCTTACCCTCATGCGAAGCTAGCGCATCTCAAGAGCGGTGGCAACTTTCCTTATCTTAGTAGAAGCGACGAAGTTAATTTGCATCTGTTGATACATTTAAGACAGTTTGATGGTACAGAGCTTTCGTCGTCGTATCTCAGTTTGCACAAAATGCCGCCATCCCAATCTCCCACAGACTCGGAAGAGAGCCCCATCAACTATTTTAACCAAAGTGAAAAATATGTGCAAATTTCATGA
Protein
MSCASELSQSHEYLSFRSSIPLRKIVVDSDNSKAWKIFDSGPRSVACPLICLPPVSGTADIYYKQVMGLASRGVRVISAEAPPYWNLKEWCDGFKRLIDILELGKVHIFGASLGGFIAQKFAELTRNFPRVASLVLCNTFADTSVFEYNDSAALFWLLPSLVLKRMLMGNFTTDKVDTRMAESIDFMVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPVTIMDVWDESALSSHVREDLYKSYPHAKLAHLKSGGNFPYLSRSDEVNLHLLIHLRQFDGTELSSSYLSLHKMPPSQSPTDSEESPINYFNQSEKYVQIS

Summary

Description
May play a role as a negative regulatory factor in CD4-dependent T-cell activation.
Subunit
Interacts with CD4.
Similarity
Belongs to the AB hydrolase superfamily.
Keywords
Complete proteome   Cytoplasm   Reference proteome   Phosphoprotein  
Feature
chain  Maspardin
EMBL
BABH01021400    BABH01021401    BABH01021402    BABH01021403    BABH01021404    BABH01021405    + More
BABH01021406    BABH01021407    NWSH01002390    PCG68404.1    KZ150235    PZC71973.1    JQ993446    AHX36980.1    ODYU01003670    SOQ42736.1    KQ461073    KPJ09694.1    KQ458575    KPJ05736.1    AGBW02013432    OWR43448.1    KQ434778    KZC04413.1    KZ288192    PBC34260.1    GBYB01008541    JAG78308.1    KQ414638    KOC66879.1    KQ759862    OAD62522.1    LBMM01007016    KMQ90118.1    AK401936    BAM18558.1    GEZM01081332    JAV61700.1    KK107730    EZA47967.1    KQ982557    KYQ55074.1    KQ977481    KYN02363.1    GL888102    EGI67496.1    GALX01005570    JAB62896.1    KK852646    KDR19527.1    KQ976425    KYM88100.1    ADTU01000017    KQ980763    KYN13505.1    LJIG01022678    KRT79291.1    GL445681    EFN89249.1    KQ971354    EFA06956.1    GEZM01081331    GEZM01081330    JAV61702.1    GECZ01029329    GECZ01027415    GECZ01027166    GECZ01022900    GECZ01020938    GECZ01011760    GECZ01008952    GECZ01008640    GECZ01007776    GECZ01007395    JAS40440.1    JAS42354.1    JAS42603.1    JAS46869.1    JAS48831.1    JAS58009.1    JAS60817.1    JAS61129.1    JAS61993.1    JAS62374.1    GECU01008072    JAS99634.1    GEBQ01031168    GEBQ01008595    JAT08809.1    JAT31382.1    GBBI01003038    JAC15674.1    GADI01001414    JAA72394.1    GBGD01002417    JAC86472.1    GECL01001370    JAP04754.1    GFPF01009589    MAA20735.1    GEDV01004016    JAP84541.1    GACK01008649    JAA56385.1    ACPB03006487    GEFH01003709    JAP64872.1    KQ981463    KYN41518.1    GBHO01005815    GBRD01002671    GDHC01000260    JAG37789.1    JAG63150.1    JAQ18369.1    KC632499    AGM32313.1    GFAC01000813    JAT98375.1    GBBM01003932    JAC31486.1    GFTR01004566    JAW11860.1    GEDC01016873    JAS20425.1    GEDC01025432    JAS11866.1    DS235442    EEB15752.1    APGK01042108    KB741002    KB631984    ENN75722.1    ERL87711.1    GFAH01000342    JAV48047.1    GDRN01051308    JAI66407.1    DS469651    EDO37239.1    KK120696    KFM78863.1    GFJQ02007519    JAV99450.1    GFWV01022734    MAA47461.1    AFFK01014481    LNIX01000001    OXA61773.1    CABZ01075441    CU929410    GL732688    EFX67004.1    AFYH01244460    AFYH01244461    AAWZ02026864    AY394947    BC059461    JX052336    AFK10564.1    JU175024    GBEX01001924    AFJ50550.1    JAI12636.1    GAAZ01001358    GBKC01002019    GBKD01001215    JAA96585.1    JAG44051.1    JAG46403.1    GFFW01002549    JAV42239.1    JARO02000728    KPP77588.1    JH881599    ELR53336.1    AF451182    BC118320    GBSI01001324    JAC95172.1    IACJ01087070    LAA49395.1    AHAT01024789    AHAT01024790    KK534035    KFP28869.1    AGTP01003205    AGTP01003206    HAAF01001736    CCP73562.1    AEYP01047069    AEYP01047070    AEYP01047071    KN123265    KFO25996.1    GDAY02001363    JAV50064.1    AAEX03016211    AADN05000047    JARO02001805    KPP74385.1    AEMK02000004    DQIR01095110    DQIR01246720    HDA50586.1    AMGL01101828    GDIQ01175723    JAK76002.1   
Pfam
PF00561   Abhydrolase_1
Interpro
IPR019734   TPR_repeat        + More
IPR029058   AB_hydrolase       
IPR026151   Maspardin       
IPR011990   TPR-like_helical_dom_sf       
IPR000073   AB_hydrolase_1       
SUPFAM
SSF48452   SSF48452        + More
SSF53474   SSF53474       
Gene 3D
PDB
3HZO     E-value=0.00337809,     Score=94

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
321
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.12469
Exp number, first 60 AAs:
0.01774
Total prob of N-in:
0.01810
outside
1  -  321
 
 

Population Genetic Test Statistics

Pi
174.762488
Theta
161.6131
Tajima's D
0.50222
CLR
0.055047
CSRT
0.518074096295185
Interpretation
Uncertain
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