Gene

KWMTBOMO11508  Validated by peptides from experiments

Annotation

PREDICTED:_pentatricopeptide_repeat-containing_protein_2?_mitochondrial-like_[Amyelois_transitella]

Location

Bomo_Chr19(-):7509542-7517164      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.738 Nuclear   Reliability : 1.075

CDS

ATGTCTCTGTTTCTAAATTATTTTTTGAAGACTTCTTTCAGCTGTAATCAACGATTGTTTTTACCCTGCAGGCAATTACATTCTACACAAGTGAGGCTGCTGTATGCCCCTGCAACAATTGGAATAGATGGGTATTTACAGGCCAGGAAAAATGTCAAAGAACAATTTGTCAATTTCTCTGAGAAATTTAAAACTAAAATGAATGATTTTGTCTCCGATTCCAAAAACATGATATTCACTGAAGATTTGAAGAACATGGTTCATTTGGCAGAACCATCAGACTTGCAACTTGTACTAAATATGATTAAAAAATTCAACACACAAAGTACAGAGTTCAGATTTGGTTCATTCGTGTTTGGCCCAGTTGTAATGAGGATGTTTCATTTCTTAGATGCTCCTAAAGAAGCACTGCAGTGTTTTGAAGAACCAGCAAATGATGGTTTTTTTGATCAACAAGTGTCATACCAGATATTACTTGATTTACTGTATTGTCATGAAATGTTTGATGAGATGTACAGGGTCTTTGAGAAAGTACAAAAGAAACAAATAAATATGACAAAGTTTCCTAAATACTGTGTGGTGTTGATAATGGCAGCTTGTTATAAAGAGAATACACCAAAAAGTTTAGAATATGCAACAAAACTATGGTCAGATATGGCTTCAACGGGAACATTACCACTCAGAAGAGCGGCGACTTCTTTTGCTGGACTCGCATTAAAACAGGGAGCTCCTCACATCGCCTTGGAATCAATATCAGGCCAACGACAGCATTATATCACAATTAGAAATATTAAGGCCATGGCTCTAGCTGATATGGGCAGAGTGGACGACGCAATACCGATATTACGAAGTGTATTAAACATCGATTCACCCGATCAGAAAGACAAGCACACATTCTTTGAAGAAACTATATCCAAAGTTGGTGAAGCAGTTGAAAAAACGAACAACAAGGATACCAAGATCGAATTCGAGGATGTCAGGAAGGCACTTATAGAGAGAGGACTCATTGATAAGGATACTCTCGACAGTCATCTGAATTTTGAAATTAAAATACAAAACAAGTTTAAGGATGCACCACGTGGAATGCCTTTTCAATCGAGAAACATGCCGTTTGGCCAACGAAAAATTAGGAAGGATTTGCAATAG

Protein

MSLFLNYFLKTSFSCNQRLFLPCRQLHSTQVRLLYAPATIGIDGYLQARKNVKEQFVNFSEKFKTKMNDFVSDSKNMIFTEDLKNMVHLAEPSDLQLVLNMIKKFNTQSTEFRFGSFVFGPVVMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVQKKQINMTKFPKYCVVLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRAATSFAGLALKQGAPHIALESISGQRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPRGMPFQSRNMPFGQRKIRKDLQ

Uniprot

A0A1E1WQC4   A0A2A4JAC2   A0A212EPM3   A0A2H1VPG8   A0A194QWL5   A0A194QLB7   + More
S4PXH8   A0A2W1B804   H9J3G9   A0A1B6JLF5   A0A1W4WVN5   A0A1B6FI95   A0A0K8T303   A0A0A9WKK6   A0A224XF09   A0A067QGI5   A0A069DTD2   A0A0P4VPB5   T1HT83   A0A2J7RDT2   A0A0V0G918   A0A023F0Z9   A0A226EUF2   A0A1B6DXB7   A0A1D2N898   A0A336MAL7   A0A336N2D2   A0A1Y1NBV0   D6WRX9   A0A2R7WAR2   J3JY18   N6U324   J9K1Z9   A0A2S2R467   U5ES26   A0A1J1I689   A0A2P8Z3Z6   A0A084VC54   A0A182ILS0   A0A151I7I2   E9IM06   A0A2M3ZA96   A0A3R7MFZ2   A0A195EAE9   A0A2M3ZA17   E2AYS9   W5JM20   A0A182PDN2   A0A2M4BQI9   A0A182THC6   A0A0N8DUZ7   A0A182I2Q1   A0A0P6H6X5   A0A0P4ZQA4   A0A0P6E8Z6   A0A182XLI5   A0A182KQM3   A0A0P5JFD9   Q5TWS3   A0A158NC65   A0A182K165   A0A0P5URY5   A0A2M4AV97   A0A0P6BHR5   A0A2M4AVE7   V5IA53   E9FQX6   A0A0P4ZKV1   A0A0P5MPQ5   A0A151I0M0   A0A0P6D7Z4   A0A0P5N848   A0A151XCR2   A0A182Q427   A0A182FGK4   A0A2M4BRI2   A0A182YMK6   A0A1B0DDZ8   Q16FZ9   Q16W31   A0A026WT99   A0A0P5N8R6   A0A182T0H6   A0A195F9A3   L7LYX6   A0A182N927   A0A0P5MR49   A0A1E1XK52   A0A2R5LG79   A0A3L8DFD8   A0A131XIW9   A0A182VFL6   A0A182R3J8   A0A1E1X9B7   A0A0P5TZ69   A0A1L8E0B6   A0A023FVP6  

Pubmed

22118469    26354079    23622113    28756777    19121390    25401762    + More
26823975    24845553    26334808    27129103    25474469    27289101    28004739    18362917    19820115    22516182    23537049    29403074    24438588    21282665    20798317    20920257    23761445    20966253    12364791    14747013    17210077    21347285    21292972    25244985    17510324    24508170    25576852    29209593    30249741    28049606    28503490   

EMBL

GDQN01002008    JAT89046.1    NWSH01002390    PCG68390.1    AGBW02013432    OWR43455.1    + More
ODYU01003670    SOQ42729.1    KQ461073    KPJ09699.1    KQ458575    KPJ05730.1    GAIX01005013    JAA87547.1    KZ150235    PZC71979.1    BABH01021397    GECU01007717    JAS99989.1    GECZ01019841    JAS49928.1    GBRD01006286    JAG59535.1    GBHO01034627    GDHC01021733    GDHC01008683    JAG08977.1    JAP96895.1    JAQ09946.1    GFTR01005359    JAW11067.1    KK853518    KDR07029.1    GBGD01001982    JAC86907.1    GDKW01002408    JAI54187.1    ACPB03016679    NEVH01005284    PNF38995.1    GECL01001662    JAP04462.1    GBBI01003547    JAC15165.1    LNIX01000001    OXA61243.1    GEDC01006982    JAS30316.1    LJIJ01000150    ODN01474.1    UFQT01000794    SSX27296.1    UFQS01004709    UFQT01004709    SSX16556.1    SSX35759.1    GEZM01007696    JAV94988.1    KQ971351    EFA06421.2    KK854531    PTY16608.1    BT128141    AEE63102.1    APGK01051641    KB741198    KB632313    ENN72972.1    ERL92168.1    ABLF02033333    ABLF02033339    GGMS01015555    MBY84758.1    GANO01003438    JAB56433.1    CVRI01000042    CRK95707.1    PYGN01000206    PSN51224.1    ATLV01010510    KE524585    KFB35548.1    KQ978417    KYM94058.1    GL764129    EFZ18479.1    GGFM01004703    MBW25454.1    QCYY01001094    ROT80662.1    KQ979236    KYN22195.1    GGFM01004636    MBW25387.1    GL443983    EFN61442.1    ADMH02001146    ETN63935.1    GGFJ01006141    MBW55282.1    GDIQ01089292    JAN05445.1    APCN01000178    GDIQ01024379    JAN70358.1    GDIP01210288    JAJ13114.1    GDIQ01077909    JAN16828.1    GDIQ01200415    GDIQ01197767    GDIQ01179311    GDIQ01083017    GDIQ01083016    GDIQ01067565    GDIQ01047474    LRGB01000642    JAK51310.1    KZS17306.1    AAAB01008807    EAL41847.2    ADTU01011668    ADTU01011669    GDIP01109350    JAL94364.1    GGFK01011374    MBW44695.1    GDIP01014382    JAM89333.1    GGFK01011448    MBW44769.1    GALX01001785    JAB66681.1    GL732523    EFX90291.1    GDIP01224435    JAI98966.1    GDIQ01153181    JAK98544.1    KQ976642    KYM78664.1    GDIQ01089291    JAN05446.1    GDIQ01153182    JAK98543.1    KQ982298    KYQ58166.1    AXCN02000540    GGFJ01006554    MBW55695.1    AJVK01032412    CH478354    EAT33163.1    CH477576    EAT38791.1    KK107109    EZA59237.1    GDIQ01149390    JAL02336.1    KQ981727    KYN37180.1    GACK01007753    JAA57281.1    GDIQ01153180    JAK98545.1    GFAA01003737    JAT99697.1    GGLE01004386    MBY08512.1    QOIP01000008    RLU19175.1    GEFH01002114    JAP66467.1    GFAC01003562    JAT95626.1    GDIP01122301    JAL81413.1    GFDF01001943    JAV12141.1    GBBL01002530    JAC24790.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000005204    UP000192223    + More
UP000027135    UP000015103    UP000235965    UP000198287    UP000094527    UP000007266    UP000019118    UP000030742    UP000007819    UP000183832    UP000245037    UP000030765    UP000075880    UP000078542    UP000283509    UP000078492    UP000000311    UP000000673    UP000075885    UP000075902    UP000075840    UP000076407    UP000075882    UP000076858    UP000007062    UP000005205    UP000075881    UP000000305    UP000078540    UP000075809    UP000075886    UP000069272    UP000076408    UP000092462    UP000008820    UP000053097    UP000075901    UP000078541    UP000075884    UP000279307    UP000075903    UP000075900   

PRIDE

H9J3G9   

Interpro

IPR034629   PTCD2        + More
IPR011990   TPR-like_helical_dom_sf       
IPR002885   Pentatricopeptide_repeat       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A1E1WQC4   A0A2A4JAC2   A0A212EPM3   A0A2H1VPG8   A0A194QWL5   A0A194QLB7   + More
S4PXH8   A0A2W1B804   H9J3G9   A0A1B6JLF5   A0A1W4WVN5   A0A1B6FI95   A0A0K8T303   A0A0A9WKK6   A0A224XF09   A0A067QGI5   A0A069DTD2   A0A0P4VPB5   T1HT83   A0A2J7RDT2   A0A0V0G918   A0A023F0Z9   A0A226EUF2   A0A1B6DXB7   A0A1D2N898   A0A336MAL7   A0A336N2D2   A0A1Y1NBV0   D6WRX9   A0A2R7WAR2   J3JY18   N6U324   J9K1Z9   A0A2S2R467   U5ES26   A0A1J1I689   A0A2P8Z3Z6   A0A084VC54   A0A182ILS0   A0A151I7I2   E9IM06   A0A2M3ZA96   A0A3R7MFZ2   A0A195EAE9   A0A2M3ZA17   E2AYS9   W5JM20   A0A182PDN2   A0A2M4BQI9   A0A182THC6   A0A0N8DUZ7   A0A182I2Q1   A0A0P6H6X5   A0A0P4ZQA4   A0A0P6E8Z6   A0A182XLI5   A0A182KQM3   A0A0P5JFD9   Q5TWS3   A0A158NC65   A0A182K165   A0A0P5URY5   A0A2M4AV97   A0A0P6BHR5   A0A2M4AVE7   V5IA53   E9FQX6   A0A0P4ZKV1   A0A0P5MPQ5   A0A151I0M0   A0A0P6D7Z4   A0A0P5N848   A0A151XCR2   A0A182Q427   A0A182FGK4   A0A2M4BRI2   A0A182YMK6   A0A1B0DDZ8   Q16FZ9   Q16W31   A0A026WT99   A0A0P5N8R6   A0A182T0H6   A0A195F9A3   L7LYX6   A0A182N927   A0A0P5MR49   A0A1E1XK52   A0A2R5LG79   A0A3L8DFD8   A0A131XIW9   A0A182VFL6   A0A182R3J8   A0A1E1X9B7   A0A0P5TZ69   A0A1L8E0B6   A0A023FVP6  

KEGG

101742765    K17711 pentatricopeptide repeat domain-containing protein 2 | (RefSeq) pentatricopeptide repeat-cont

GO

GO:0050684   GO:0005739   GO:0016021   GO:0005515  

PANTHER

PTHR14700  

Length:

381

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0797899999999999

Exp number, first 60 AAs:

0.00472

Total prob of N-in:

0.00617

outside

1  -  381

 

 

Pi

19.246866

Theta

157.768823

Tajima's D

-0.798628

CLR

0.470882

CSRT

0.172791360431978

Interpretation

Uncertain