Silkworm Genome Informatics Database

Gene

KWMTBOMO11500

Annotation

hypothetical_protein_M514_27221_[Trichuris_suis]

Location

Bomo_Chr19(+):7225851-7230010 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.772

CDS

ATGGATAAATACAACCCAGATACATTCAGAATTGACGATTACATTGATTTTTTCGAAAACAAATGCAAAATTCTTGATATCGATAACAGCGACTTACAGAAAGATTTGCTTCTGAATTTACTAACACCAGAGATATTCCAGGAATTAAAAGTAGCTTTAACGCCTGATTTCGATATAGCTACATACAGCGAAATTTGTAACAAATTATTAGACCTCTATCGCATAAAAACGACGAGTAATAACGAGGAAGAAAGCGATGATGAAGTTATCTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGGATCAATGGCATACCTTGCACTATGGATTGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTGTGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAGGCCTACGGCAACACAAACTTAAAAACAAAGGGAATTACAAAAGTGACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCCAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCAGTATACTCCATCAAAACATCAATACTGATTACTCTTAAACAAATACTGGATAAACATTCACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGATAGATCGTCTGATCTCAGAAGGGATAGTGGAAAAAGTAGATCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGAAGTTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCAATTTTCGATCAACTACGCCAAAATCTCGCAAACGGTAAATTATTTTCAAAAATAGACCTTAAAGACGCATACTTACAATTTGAAATAGCACCGGATTCGAAAAAGTACTTGACGTTGTCAACACATAAAGGGTATTTCCAATACAATAGAATGCCTTTTGGAATACCGACTGCTCCTTCAATTTTCCAACATTTTCTGGATCAACTGCTAGGCGATATCACCAATGTAGCTGTATATTTTGACGACATAGCTATAGCAGGGAAAGATCTTTCAGAACATTTACAAACTTTATCTATTGTATTCGATCGCTTACAAAACGCTGGCCTAAAAGTTAATTTAAAGAAATGTAATTTCTTACAGAATCAGATTGAATACCTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCTCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACGGAACCCTCCGAGATAGAAGGGCTTGTACATAAAATAGAACTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAACCCAGAAATGAAACCATTCTACAGAAACCGGGCTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCAACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGCAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAATATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACATGCTGATCACATCAGGCCACGCGAGTCCTCCACCTCAGAAACCCCGAGGAATGAAAGGGCACATTCTTCTATGCTGGCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAACAATTAGCGAAAGGCTAACTAAAAACAAGAATTCGGCAGCAGTACCATTACCTACACCGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGTATTCGCAATTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MDKYNPDTFRIDDYIDFFENKCKILDIDNSDLQKDLLLNLLTPEIFQELKVALTPDFDIATYSEICNKLLDLYRIKTTSNNEEESDDEVICSVLGTRKRECKQIDVRINGIPCTMDWDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYSIKTSILITLKQILDKHSQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIEREIDRLISEGIVEKVDPNITPIEWATPTVNILKSTGEVRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANGKLFSKIDLKDAYLQFEIAPDSKKYLTLSTHKGYFQYNRMPFGIPTAPSIFQHFLDQLLGDITNVAVYFDDIAIAGKDLSEHLQTLSIVFDRLQNAGLKVNLKKCNFLQNQIEYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSEIEGLVHKIELRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRAELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHINFAGPFEGSYWLVLCDALSKWVQIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITSRKHKYSYIVSTPGGLEKRRHADHIRPRESSTSETPRNERAHSSMLAATASPDIGMETTISERLTKNKNSAAVPLPTPQSPTNVQISPNSPSQYSQLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Uniprot

A0A085MTP2 A0A2B4S0C2 A0A2B4RI10 A0A0V1ATG7 A0A0V0ZE23 A0A2B4S2I1 + More
A0A0V1BER5 A0A0V1BEY8

Pubmed

24929829

EMBL

KL367659 KFD60588.1 LSMT01000238 PFX22483.1 LSMT01000599 PFX15892.1 + More
JYDH01000221 KRY28059.1 JYDQ01000223 KRY10622.1 LSMT01000232 PFX22695.1 JYDH01000054 KRY35447.1 KRY35448.1

Proteomes

UP000225706 UP000054776 UP000054783

Pfam

PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF05147   LANC_like

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf
IPR000477   RT_dom
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR041373   RT_RNaseH
IPR001878   Znf_CCHC
IPR021109   Peptidase_aspartic_dom_sf
IPR012341   6hp_glycosidase-like_sf
IPR020464   LanC-like_prot_euk
IPR007822   LANC-like

SUPFAM

SSF53098 SSF53098 + More
SSF50630 SSF50630

Gene 3D

3.30.420.10 2.40.70.10 1.50.10.10

CDD

cd04794 euk_LANCL

ProteinModelPortal

A0A085MTP2 A0A2B4S0C2 A0A2B4RI10 A0A0V1ATG7 A0A0V0ZE23 A0A2B4S2I1 + More
A0A0V1BER5 A0A0V1BEY8

PDB

4OL8 E-value=8.58198e-25, Score=286

KEGG

105842438 no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074 GO:0003676 GO:0008270 GO:0003824 GO:0008233 GO:0004298 GO:0005839 GO:0051603 GO:0016740 GO:0003707 GO:0006418

Length:

1060

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00296000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00012

outside

1 - 1060

Pi

389.730605

Theta

225.163758

Tajima's D

2.105156

CLR

0.138711

CSRT

0.898705064746763

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree