Gene

KWMTBOMO11489

Annotation

PREDICTED:_thrombospondin_type-1_domain-containing_protein_4-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr19(+):6823807-6838556      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.791

CDS

ATGGCGCCGACACAGATGACAACAGCGGAACCTTCAAGTTCAGGTTACGCGTGGAGCGTTTGGGGTCGATGGAGTCCTTGCTCTAGGACCTGCGGCGGTGGTGTGTCAGTACAAGAGCGACAGTGCCTGCCAAGGTTATTGACAGCACCTCGTAATCTTCAAGTGAACAGTAACGAAACGACACCTGTCCTAACAGTTCGAGTTACAAGACAAATCAACAAAGGATGCCTTGGGGTCGACAGAAGATACCACGAGTGCAACACACAGCCTTGTGCAGGAGGCGTTCTGAATACGCGCGCAGAACAATGTAGTTCCTTTGATAGAAGACCATTTAGAGGAAGGTTTTACACATGGATTCCATATGTTGACGGTATGTTTGAAGAGTTACAAGGAAGCGAGATTGGTTGTTTTTTGTTTATTTGA

Protein

MAPTQMTTAEPSSSGYAWSVWGRWSPCSRTCGGGVSVQERQCLPRLLTAPRNLQVNSNETTPVLTVRVTRQINKGCLGVDRRYHECNTQPCAGGVLNTRAEQCSSFDRRPFRGRFYTWIPYVDGMFEELQGSEIGCFLFI

Uniprot

A0A2A4K7Z3   A0A2A4K788   A0A194QK21   A0A212FNQ0   A0A194QXM2   A0A194QVZ7   + More
A0A194QLA7   A0A1Y1M948   A0A1Y1MD44   A0A034WK37   A0A2G8JGY2   W8BJ09   A0A0K8UP59   T1J287   E2B927   E9FVK6   A0A093CC75   A0A094K8X3   A0A0N7ZCV3   A0A0P4WFN0   A0A164N9T3   A0A0J7L0V3   A0A0K8TYL1   A0A2P2HZX1   F7CDC7   A0A386H774   A0A1L8H0S1   A0A034VDU6   A0A034VFX3   A0A195EKD7   A0A3L8RUI8   A0A151I0E7   U3IKM6   A0A195FPF2   A0A158NJN3   A0A2Y9P673   G1SZT4   A0A2Y9NV18   A0A195D6Q8   S9YB67   A0A2K6GJU6   A0A1S2ZB84   A0A218UWH5   A0A2F0B4C0   A0A0L7RBC8   A0A091EW05   A0A1I8PD91   R0LP29   A0A3L8DX48   G3HNF5   A0A2U4AG27   A0A0P6A7P3   A0A0P6I9W8   A0A0P5QA30   A0A0P6BRN8   A0A2I0M813   A0A139WEE8   H0ZFV9   M7BG77   A0A091GT52   A0A2P4T8K1   A0A091UL06   A0A091QRQ7   V8NWJ2   A0A026W198   H0VPT7   A0A093P5Z2   A0A087QYA2   A0A093KKX2   A0A087VCU4   A0A0A0AUN3   A0A091PI59   A0A091JPG9   A0A093F991   A0A091H9C0   A0A212DDA1   A0A384AB90   M3WD78   F7BTW4   U3JC10   A0A1S3T5W6   A0A2U4BT67   A0A1V4K0J6   A0A091T7H6   A0A1V4K0B2   A0A093TJ88   F6YPW6   A0A340WF03   A0A212CUX6   I3MJ34   A0A2K6S8Q1   A0A1L8FAF9   A0A093H7Z2   A0A087ZTP2   E1C028   A0A091SBA9   A0A1S3EW26  

Pubmed

26354079    22118469    28004739    25348373    29023486    24495485    + More
20798317    21292972    20431018    27762356    30282656    23749191    21347285    21993624    23149746    30249741    21804562    23371554    18362917    19820115    20360741    23624526    24297900    24508170    29294181    17975172    17495919    15592404   

EMBL

NWSH01000085    PCG79780.1    PCG79774.1    KQ458575    KPJ05724.1    AGBW02004790    + More
OWR55371.1    KQ461073    KPJ09705.1    KPJ09708.1    KPJ05720.1    GEZM01037053    JAV82224.1    GEZM01037051    JAV82225.1    GAKP01003001    JAC55951.1    MRZV01002011    PIK35011.1    GAMC01007823    JAB98732.1    GDHF01023948    JAI28366.1    JH431796    GL446425    EFN87793.1    GL732525    EFX88573.1    KL243882    KFV13515.1    KL342825    KFZ53971.1    GDRN01059605    JAI65488.1    GDRN01059606    JAI65487.1    LRGB01002864    KZS05766.1    LBMM01001469    KMQ96261.1    GDHF01032966    JAI19348.1    IACF01001636    LAB67327.1    AAMC01010566    AAMC01010567    MG452690    AYD41577.1    CM004470    OCT89688.1    GAKP01018290    GAKP01018283    GAKP01018279    GAKP01018275    JAC40669.1    GAKP01018287    JAC40665.1    KQ978782    KYN28387.1    QUSF01000209    RLV87350.1    KQ976666    KYM78288.1    ADON01063136    ADON01063137    KQ981424    KYN41824.1    ADTU01018081    ADTU01018082    ADTU01018083    ADTU01018084    AAGW02049272    AAGW02049273    AAGW02049274    KQ976818    KYN08109.1    KB017008    EPY81240.1    MUZQ01000107    OWK58137.1    NTJE010068574    MBV97868.1    KQ414617    KOC68227.1    KK718970    KFO60494.1    KB742984    EOB02193.1    QOIP01000003    RLU24509.1    JH000544    EGW01624.1    GDIP01038188    JAM65527.1    GDIQ01007517    JAN87220.1    GDIQ01117074    JAL34652.1    GDIP01014816    JAM88899.1    AKCR02000031    PKK25817.1    KQ971354    KYB26304.1    ABQF01124297    ABQF01124298    KB525803    EMP36209.1    KL508245    KFO85570.1    PPHD01005194    POI32695.1    KL409709    KFQ91331.1    KK803178    KFQ30265.1    AZIM01001684    ETE66023.1    KK107499    EZA49788.1    AAKN02052544    KL225118    KFW67647.1    KL225999    KFM06206.1    KK588159    KFV98355.1    KL488516    KFO10436.1    KL872993    KGL97572.1    KK659044    KFQ06943.1    KK502392    KFP22874.1    KK385402    KFV50774.1    KL448320    KFO82802.1    MKHE01000004    OWK16223.1    AANG04002512    AGTO01000794    AGTO01010913    AGTO01021033    LSYS01005191    OPJ77901.1    KK441463    KFQ70326.1    OPJ77900.1    KL441652    KFW94354.1    AAMC01110600    MKHE01000012    OWK09776.1    AGTP01010237    AGTP01010238    CM004480    OCT68581.1    KL206082    KFV78718.1    AADN05000558    KK947801    KFQ55819.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000053240    UP000230750    UP000008237    + More
UP000000305    UP000076858    UP000036403    UP000008143    UP000186698    UP000078492    UP000276834    UP000078540    UP000016666    UP000078541    UP000005205    UP000248483    UP000001811    UP000078542    UP000233160    UP000079721    UP000197619    UP000053825    UP000052976    UP000095300    UP000279307    UP000001075    UP000245320    UP000053872    UP000007266    UP000007754    UP000031443    UP000053283    UP000053097    UP000005447    UP000054081    UP000053286    UP000053858    UP000053119    UP000053760    UP000261681    UP000011712    UP000002280    UP000016665    UP000087266    UP000190648    UP000265300    UP000005215    UP000233220    UP000053584    UP000005203    UP000000539    UP000081671   

PRIDE

G3HNF5   

Pfam

PF05986   ADAM_spacer1        + More
PF08686   PLAC
PF00090   TSP_1
PF01562   Pep_M12B_propep
PF17771   ADAM_CR_2
PF01421   Reprolysin
PF01759   NTR
PF00014   Kunitz_BPTI
PF07679   I-set
PF00047   ig

Interpro

IPR013273   ADAMTS/ADAMTS-like        + More
IPR010294   ADAM_spacer1       
IPR010909   PLAC       
IPR000884   TSP1_rpt       
IPR036383   TSP1_rpt_sf       
IPR003582   ShKT_dom       
IPR041645   ADAM_CR_2       
IPR001590   Peptidase_M12B       
IPR002870   Peptidase_M12B_N       
IPR024079   MetalloPept_cat_dom_sf       
IPR008993   TIMP-like_OB-fold       
IPR001134   Netrin_domain       
IPR018933   Netrin_module_non-TIMP       
IPR013106   Ig_V-set       
IPR036880   Kunitz_BPTI_sf       
IPR020901   Prtase_inh_Kunz-CS       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR002223   Kunitz_BPTI       
IPR013098   Ig_I-set       
IPR013151   Immunoglobulin       

SUPFAM

SSF82895   SSF82895        + More
SSF50242   SSF50242       
SSF48726   SSF48726       
SSF57362   SSF57362       

Gene 3D

2.20.100.10     3.40.390.10     2.60.40.10     4.10.410.10    

CDD

cd00109  KU

ProteinModelPortal

A0A2A4K7Z3   A0A2A4K788   A0A194QK21   A0A212FNQ0   A0A194QXM2   A0A194QVZ7   + More
A0A194QLA7   A0A1Y1M948   A0A1Y1MD44   A0A034WK37   A0A2G8JGY2   W8BJ09   A0A0K8UP59   T1J287   E2B927   E9FVK6   A0A093CC75   A0A094K8X3   A0A0N7ZCV3   A0A0P4WFN0   A0A164N9T3   A0A0J7L0V3   A0A0K8TYL1   A0A2P2HZX1   F7CDC7   A0A386H774   A0A1L8H0S1   A0A034VDU6   A0A034VFX3   A0A195EKD7   A0A3L8RUI8   A0A151I0E7   U3IKM6   A0A195FPF2   A0A158NJN3   A0A2Y9P673   G1SZT4   A0A2Y9NV18   A0A195D6Q8   S9YB67   A0A2K6GJU6   A0A1S2ZB84   A0A218UWH5   A0A2F0B4C0   A0A0L7RBC8   A0A091EW05   A0A1I8PD91   R0LP29   A0A3L8DX48   G3HNF5   A0A2U4AG27   A0A0P6A7P3   A0A0P6I9W8   A0A0P5QA30   A0A0P6BRN8   A0A2I0M813   A0A139WEE8   H0ZFV9   M7BG77   A0A091GT52   A0A2P4T8K1   A0A091UL06   A0A091QRQ7   V8NWJ2   A0A026W198   H0VPT7   A0A093P5Z2   A0A087QYA2   A0A093KKX2   A0A087VCU4   A0A0A0AUN3   A0A091PI59   A0A091JPG9   A0A093F991   A0A091H9C0   A0A212DDA1   A0A384AB90   M3WD78   F7BTW4   U3JC10   A0A1S3T5W6   A0A2U4BT67   A0A1V4K0J6   A0A091T7H6   A0A1V4K0B2   A0A093TJ88   F6YPW6   A0A340WF03   A0A212CUX6   I3MJ34   A0A2K6S8Q1   A0A1L8FAF9   A0A093H7Z2   A0A087ZTP2   E1C028   A0A091SBA9   A0A1S3EW26  

PDB

3GHN     E-value=1.5795e-09,     Score=143

KEGG

101742424    K23377 thrombospondin type-1 domain-containing protein 4 | (RefSeq) thrombospondin type-1 domain-con

GO

GO:0008233   GO:0007229   GO:0016021   GO:0004222   GO:0005576   GO:0001654   GO:0090331   GO:0004867  

Subcellular location

Secreted  

Length:

140

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00409

Exp number, first 60 AAs:

0.00089

Total prob of N-in:

0.27673

outside

1  -  140

 

 

Pi

194.574926

Theta

152.967289

Tajima's D

1.261253

CLR

0.473713

CSRT

0.727113644317784

Interpretation

Uncertain