Gene

KWMTBOMO11481

Pre Gene Modal

BGIBMGA001917

Annotation

PREDICTED:_RING_finger_protein_nhl-1-like_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr19(-):6718160-6725826      View in EpiBrowser

Full name

Probable ribosome biogenesis protein      

Location in the cell

Nuclear   Reliability : 2.591

CDS

ATGGCAGATAAAGTGAAAAAGAAACCGTTTTTTACGCTTAAGCGTTGGAATAGTCAAAAGCAAAGCGACTACGTTTTGGGAACGATCAGTCCAATAACACCGTCGCCGCGGGGACAGTCTCAGGATAACACAGAGTTGTGCAGGTCACACAACTCACTAGCGACTCGGACGATGAATTCCGTTTCAGATTCTAAGCCTAGAAAGTTATCTGCGGGCGGTATCAAGGAATTGGTTCAGTGTCCGCTATGTCTTGACGTACTTCACAATCCGAAGATGCTACCATGTCAGCACACATTCTGCATGACCTGTCTCAATTCTTATATTGGCGATAAACCTATATTTGAATGTCCAATATGCAAAACGAAAATACAAGTACAAGGACCGAATTTCATAAGAGATTTGCCTTCGAATCTATACATAGATTCGTTATTGAATATAGTGGGTATTCATAATAAGCCCCAGAAGAATCCAGAAACACCTCCAGCGACTCCAACTACACCTGGCACTCAAAGCGTGGATCTCTTCGCTGTTGGGCTCCGATGTTCGAATTGCAAAAGCCATTGTGACAATACAAATATTACTTCATGCGAACATTGTAGATTGAAATTCTGCGGTGTCTGCTGGTCCCAACATTTAGACGATATGAGAACTCAAATAGGATCAATATTGAAACAGCTCGATTCTGCTACCAATCGACTCAATCACAAAATAGAACATTTTAAGGATCGTTGCGAACGTATTACTGAACAGATAAACAAAACGGCTGAAGATAAGATCAACGCTATAATCGATTCCAAAAACAATATGCTGATTGAAGCGGTGAGCTTGCAGAAATCTGGCGATATGTCTGCTTTGGCGCTAAAGACTTCGTTGGAGGAAGCCAAAACAGTCGCTTCGAAGGCTATGACAGTATCGGATGGCGTTAACATAGATGGCGAGCAACAAGTAACAACATTCATGAATCTTCATCAAAATGCAATACAATTACTAACGGACGTAATAAAATGGGACACGGAAGGATTCGTTTTCGATAAAGAGAACTTCACGTTGGAAGTTGATTCAACTACACCAGTTGACGCTGAATCGGAAGACCCAGTGTCTGAAGGATCTAAACATAACGATCCGTTGGAAAGCGAGGAGAGTCTAGTCACTTATTACAGATCCCGTAATTTCATACCACACTATGTGTGGCGTAAAACCTCGCGACCGAGCGGTGTCGGTCTGAGTCCGTGGGACAGTCATCTTTACGTCTGCGGAATGGACAGTCATAGCGTGATGGTGGTAGAACGTGCGCAGGCGAAGATCGTGACGCGTCTGACGTGCGATGAGATGTTATGTCCTGTCCAGATCGCGTTTATGAAGAGTCAGGGCGAAATTTATGTCACCGACAAATGGAAACACTGCATCCATGTTTTCTCCAAAGACGGTCTGTACTTAAGGTCCATCGGTCATAAAGGCAGCAGAGTCGGCATGTTTCGCTCTCCCGAGGGTATTGCCACAGACAACGCTAATAATCTTATTTATGTTGCTGATACTGGAAACGATAGGGTACAGATTATACAACCTGATGGAAAATTCGTTGACCAAATAGGAGTTTATAACAAACTGAAACCAACGGGTAATACCACATTGTGGGAAACCAAAGAAGTAATCTGCACGGAACTAAACACACCCACTGCGGTCGCCCTGACCGCCGATCGAATAATCATACTGGACAGCGGAAACCGACGCGTCAAAGTGTACAATAAAAATGATAAAGGAAAAATTCTCGAATTCGGCTCTACGGGTCAGAGAAAAGGCCAGTTCAGACAACCAGAAGTTTTGGCTGTAGATCCTATGGGCTACATATTAGTTGGAGACTCTGGGAATTGCAGAGTCCAGGTGTTCAAGCCGACAGGACAGCTGGTCAGAGTATTCGGAGGCTTCGGCACTCAACCCGGCAAATTCGGGTGGATATCCGGAATACACGTCACAAAGCATTTAGATATTATAATTTGCGATACCAAAAACCACACCGTGAATTTTCTGTAA

Protein

MADKVKKKPFFTLKRWNSQKQSDYVLGTISPITPSPRGQSQDNTELCRSHNSLATRTMNSVSDSKPRKLSAGGIKELVQCPLCLDVLHNPKMLPCQHTFCMTCLNSYIGDKPIFECPICKTKIQVQGPNFIRDLPSNLYIDSLLNIVGIHNKPQKNPETPPATPTTPGTQSVDLFAVGLRCSNCKSHCDNTNITSCEHCRLKFCGVCWSQHLDDMRTQIGSILKQLDSATNRLNHKIEHFKDRCERITEQINKTAEDKINAIIDSKNNMLIEAVSLQKSGDMSALALKTSLEEAKTVASKAMTVSDGVNIDGEQQVTTFMNLHQNAIQLLTDVIKWDTEGFVFDKENFTLEVDSTTPVDAESEDPVSEGSKHNDPLESEESLVTYYRSRNFIPHYVWRKTSRPSGVGLSPWDSHLYVCGMDSHSVMVVERAQAKIVTRLTCDEMLCPVQIAFMKSQGEIYVTDKWKHCIHVFSKDGLYLRSIGHKGSRVGMFRSPEGIATDNANNLIYVADTGNDRVQIIQPDGKFVDQIGVYNKLKPTGNTTLWETKEVICTELNTPTAVALTADRIIILDSGNRRVKVYNKNDKGKILEFGSTGQRKGQFRQPEVLAVDPMGYILVGDSGNCRVQVFKPTGQLVRVFGGFGTQPGKFGWISGIHVTKHLDIIICDTKNHTVNFL

Description

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Similarity

Belongs to the eIF-2B alpha/beta/delta subunits family.
Belongs to the TSR3 family.

Uniprot

A0A2A4JZF5   H9IXD4   A0A3S2M0I5   A0A2H1WBI0   A0A194QJG6   A0A194QXN1   + More
A0A2J7QA88   A0A2J7QA68   D6WU81   A0A2P8YEF2   A0A182WLF3   A0A067R0X3   A0A1L8DSQ1   A0A1L8DSU9   A0A1S4FGT6   A0A182FDG7   W5JF52   A0A182P479   A0A182KCD1   A0A182TCZ9   A0A182MRI8   A0A182WWW1   A0A1W4WX74   A0A2R5LDJ9   A0A182YEI0   A0A182RF50   B7P1F2   A0A182KQA1   A0A182I2F9   A0A182GB63   A0A1B0D3H3   E2BUM3   A0A182IT10   A0A0P6DVP5   A0A0P6I8V6   A0A0N8D632   A0A232FL85   A0A3L8DUW5   A0A182QUU7   A0A1B0CKZ7   K7JHE6   E9FQS1   A0A0P6CYQ8   V5HLT0   A0A0P5LPM4   A0A0N8DZX2   A0A0P5XK61   A0A0P5MXN7   A0A3R7M9F7  

Pubmed

19121390    26354079    18362917    19820115    29403074    24845553    + More
20920257    23761445    25244985    20966253    26483478    20798317    28648823    30249741    20075255    21292972    25765539   

EMBL

NWSH01000386    PCG76772.1    BABH01017977    RSAL01000086    RVE48294.1    ODYU01007425    + More
SOQ50192.1    KQ458575    KPJ05713.1    KQ461073    KPJ09715.1    NEVH01016333    PNF25479.1    PNF25478.1    KQ971352    EFA06255.1    PYGN01000661    PSN42641.1    KK853117    KDR11162.1    GFDF01004653    JAV09431.1    GFDF01004654    JAV09430.1    ADMH02001663    ETN61515.1    AXCM01003600    GGLE01003412    MBY07538.1    ABJB010190806    DS616539    EEC00424.1    APCN01000155    JXUM01052092    JXUM01052093    KQ561718    KXJ77728.1    AJVK01023562    AJVK01023563    GL450730    EFN80610.1    GDIQ01075491    JAN19246.1    GDIQ01008016    JAN86721.1    GDIP01065191    LRGB01002568    JAM38524.1    KZS07117.1    NNAY01000058    OXU31422.1    QOIP01000004    RLU24260.1    AXCN02000424    AJWK01016803    AJWK01016804    GL732523    EFX90037.1    GDIQ01087843    JAN06894.1    GANP01009975    JAB74493.1    GDIQ01177252    JAK74473.1    GDIQ01075492    JAN19245.1    GDIP01073052    JAM30663.1    GDIQ01172304    JAK79421.1    QCYY01001636    ROT76602.1   

Proteomes

UP000218220    UP000005204    UP000283053    UP000053268    UP000053240    UP000235965    + More
UP000007266    UP000245037    UP000075920    UP000027135    UP000069272    UP000000673    UP000075885    UP000075881    UP000075902    UP000075883    UP000076407    UP000192223    UP000076408    UP000075900    UP000001555    UP000075882    UP000075840    UP000069940    UP000249989    UP000092462    UP000008237    UP000075880    UP000076858    UP000215335    UP000279307    UP000075886    UP000092461    UP000002358    UP000000305    UP000283509   

PRIDE

H9IXD4   

Pfam

PF01436   NHL        + More
PF13445   zf-RING_UBOX
PF00097   zf-C3HC4
PF08450   SGL
PF07818   HCNGP
PF01008   IF-2B
PF04068   RLI
PF04034   Ribo_biogen_C

Interpro

IPR001258   NHL_repeat        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR011042   6-blade_b-propeller_TolB-like       
IPR001841   Znf_RING       
IPR027370   Znf-RING_LisH       
IPR017907   Znf_RING_CS       
IPR013017   NHL_repeat_subgr       
IPR018957   Znf_C3HC4_RING-type       
IPR006058   2Fe2S_fd_BS       
IPR013658   SGL       
IPR000315   Znf_B-box       
IPR037171   NagB/RpiA_transferase-like       
IPR000649   IF-2B-related       
IPR012479   SAP30BP       
IPR015988   STAT_TF_coiled-coil       
IPR011041   Quinoprot_gluc/sorb_DH       
IPR022968   Rbsm_biogenesis       
IPR007177   TDD_dom       
IPR007209   RNaseL-inhib_metal-bd_dom       

SUPFAM

SSF100950   SSF100950        + More
SSF47655   SSF47655       
SSF50952   SSF50952       

Gene 3D

2.120.10.30     3.30.40.10    

ProteinModelPortal

A0A2A4JZF5   H9IXD4   A0A3S2M0I5   A0A2H1WBI0   A0A194QJG6   A0A194QXN1   + More
A0A2J7QA88   A0A2J7QA68   D6WU81   A0A2P8YEF2   A0A182WLF3   A0A067R0X3   A0A1L8DSQ1   A0A1L8DSU9   A0A1S4FGT6   A0A182FDG7   W5JF52   A0A182P479   A0A182KCD1   A0A182TCZ9   A0A182MRI8   A0A182WWW1   A0A1W4WX74   A0A2R5LDJ9   A0A182YEI0   A0A182RF50   B7P1F2   A0A182KQA1   A0A182I2F9   A0A182GB63   A0A1B0D3H3   E2BUM3   A0A182IT10   A0A0P6DVP5   A0A0P6I8V6   A0A0N8D632   A0A232FL85   A0A3L8DUW5   A0A182QUU7   A0A1B0CKZ7   K7JHE6   E9FQS1   A0A0P6CYQ8   V5HLT0   A0A0P5LPM4   A0A0N8DZX2   A0A0P5XK61   A0A0P5MXN7   A0A3R7M9F7  

PDB

6D69     E-value=3.46322e-34,     Score=365

KEGG

101743568    no KO assigned | (RefSeq) RING finger protein nhl-1-like

GO

GO:0046872   GO:0051537   GO:0043161   GO:0000209   GO:0061630   GO:0008270   GO:0006355   GO:0044237   GO:0007165   GO:0003824   GO:0006364   GO:0005515   GO:0003923   GO:0016255   GO:0042765   GO:0016010   GO:0016740   GO:0003707   GO:0006418  

PANTHER

PTHR20426  

Length:

676

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00978

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00072

outside

1  -  676

 

 

Pi

154.832088

Theta

177.689635

Tajima's D

-1.057399

CLR

0.386205

CSRT

0.128393580320984

Interpretation

Uncertain