Gene

KWMTBOMO11480

Pre Gene Modal

BGIBMGA001903

Annotation

PREDICTED:_ras-related_protein_Rab-43_[Amyelois_transitella]

Location

Bomo_Chr19(+):6709927-6711637      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.678

CDS

ATGAGCAGCCGTAACCCCAACACGCTAATGAGCGTGCCTGATGACCAGTTTGATTATTTATTCAAAATAGTTCTCATAGGAGACTGCGGTACCGGTAAAACATGTATAGTGCAGCGTCTTAAATCAGGAAATTTCATCGAAAGACACGGAAATACTATAGGCGTAGACTTTTCTATGAAAACATTATTAGTCGACGGAAAGAAAGTCAAGCTGCAAATTTGGGATACAGCAGGCCAAGAACGTTTCAGGACTATCACTCAGAGCTACTATCGGTCTGCAAATGGAGTCATTATCGTTTATGATATCACAAAACGTTCAACATTTTTGTCCCTGCAAAAATGGATTGAGGAAGTGCGTAGGTATACGTCCTCCAATGTTATAGTATCTCTAATTGGAAACAAATGTGATCTAACAGAGCAAAGGGAAGTTGAATCAGATGAACCAAAATCTTTTTGTCGATATGTCCCGGAGATAATGTTTGTAATGGAAACATCAGCCAAAGACAATACCAATGTTGAAGATACATTCCGAAGTCTGGCTACAGAGCTGAAGAGACAACATGACAACAGTGAAGGCCCACCAGCCGAATCGGACTCAGTAGTACTTGGAGAAAGCCATTCAATTTCCAGATGTCAACCTTGCCGCTCCTCCTAA

Protein

MSSRNPNTLMSVPDDQFDYLFKIVLIGDCGTGKTCIVQRLKSGNFIERHGNTIGVDFSMKTLLVDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIVYDITKRSTFLSLQKWIEEVRRYTSSNVIVSLIGNKCDLTEQREVESDEPKSFCRYVPEIMFVMETSAKDNTNVEDTFRSLATELKRQHDNSEGPPAESDSVVLGESHSISRCQPCRSS

Uniprot

A0A3S2LJX8   A0A212FGE0   A0A194QJK6   A0A194R1I9   H9IXC0   A0A2A4JXN0   + More
A0A2H1V6S4   A0A1W4WX37   A0A0K8TSC2   B4MKS3   A0A182GB62   Q171U7   A0A0K8VID1   A0A034VUZ5   B4HJF6   A0A1Y1K7F3   Q29F84   B4H157   D6WU83   B4PG54   B3NFU9   B4QLL5   O18339   A0A2J7R7R5   B4L949   A0A1W4UEV9   A0A3B0KNT9   W8BL54   A0A1B6EPM2   A0A1Q3FHW3   B0VZC7   A0A195AWZ4   A0A195FDS0   A0A158NHW5   A0A195BY42   A0A151WQX2   A0A182U3T0   A0A182JLA0   A0A2A3EQE0   A0A088A0H0   A0A1L8DV38   E2C8L9   A0A154PIS5   A0A1B0D2Z4   A0A026WIK4   A0A182YEI1   B4LC99   A0A182WWW2   Q7QIV8   A0A0A1XC55   A0A182KQA5   A0A1L8DV60   B3M9D7   B4J201   A0A182VEW5   E2AV92   A0A0K8W5W4   A0A1A9W553   A0A084VZ37   A0A182RF51   F4X3B4   A0A1B6JZ11   A0A195EG47   A0A182SYD4   A0A182WLF4   A0A232F6X2   A0A182QJE0   A0A1B6LZK2   D3TNM5   A0A1A9XT22   A0A1A9VAQ0   A0A1B0B963   A0A1B0AIE5   A0A182NK87   A0A1B0CDW6   A0A067RNV5   W5JFD1   A0A2P8Y4R1   A0A182JZW8   A0A0M4EQA6   A0A182M476   A0A182FDG6   A0A2M4C002   T1HAT8   A0A0V0GBR0   A0A069DPF8   A0A182P478   A0A182I2G0   A0A0P4WJI7   A0A1I8PB27   A0A0L7R1H3   A0A146LSJ5   A0A2S2QJY4   A0A2S2NGX9   A0A2H8TLN7   J9JMP7   A0A0N0BDF8   E0VAI1   A0A1I8MNV2   A0A0A9WD40  

Pubmed

22118469    26354079    19121390    26369729    17994087    26483478    + More
17510324    25348373    28004739    15632085    18362917    19820115    17550304    22936249    9074639    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    21347285    20798317    24508170    30249741    25244985    12364791    14747013    17210077    25830018    20966253    24438588    21719571    28648823    20353571    24845553    20920257    23761445    29403074    26334808    26823975    20566863    25315136    25401762   

EMBL

RSAL01000086    RVE48295.1    AGBW02008683    OWR52804.1    KQ458575    KPJ05712.1    + More
KQ461073    KPJ09716.1    BABH01017977    NWSH01000386    PCG76771.1    ODYU01000957    SOQ36499.1    GDAI01000351    JAI17252.1    CH963847    EDW72779.1    JXUM01052090    JXUM01052091    JXUM01052092    KQ561718    KXJ77727.1    CH477446    EAT40760.1    GDHF01013663    JAI38651.1    GAKP01013293    GAKP01013292    JAC45660.1    CH480815    EDW40680.1    GEZM01093746    GEZM01093745    JAV56150.1    CH379067    EAL31247.1    CH479202    EDW30034.1    KQ971352    EFA06254.1    CM000159    EDW93198.1    CH954178    EDV50711.1    CM000363    CM002912    EDX09675.1    KMY98339.1    AE014296    AY071400    D84348    AAF50452.1    AAL49022.1    AGB94270.1    BAA21712.1    NEVH01006727    PNF36870.1    CH933816    EDW17224.1    OUUW01000012    SPP87526.1    GAMC01012524    GAMC01012522    JAB94031.1    GECZ01030006    JAS39763.1    GFDL01007921    JAV27124.1    DS231813    EDS25718.1    KQ976725    KYM76570.1    KQ981636    KYN38810.1    ADTU01016089    KQ978501    KYM93579.1    KQ982813    KYQ50299.1    KZ288194    PBC33900.1    GFDF01003780    JAV10304.1    GL453666    EFN75749.1    KQ434905    KZC11218.1    AJVK01023155    AJVK01023156    KK107185    QOIP01000012    EZA55850.1    RLU16129.1    CH940647    EDW68744.2    AAAB01008807    EAA03951.1    GBXI01005298    JAD08994.1    GFDF01003781    JAV10303.1    CH902618    EDV41150.1    CH916366    EDV95926.1    GL443059    EFN62646.1    GDHF01005793    JAI46521.1    ATLV01018597    KE525239    KFB43231.1    GL888609    EGI59095.1    GECU01003291    JAT04416.1    KQ978957    KYN27240.1    NNAY01000847    OXU26220.1    AXCN02000424    GEBQ01010864    JAT29113.1    EZ423027    ADD19303.1    JXJN01010288    AJWK01008313    KK852556    KDR21424.1    ADMH02001663    ETN61514.1    PYGN01000933    PSN39240.1    CP012525    ALC44417.1    AXCM01003600    GGFJ01009482    MBW58623.1    ACPB03016988    GECL01000677    JAP05447.1    GBGD01002951    JAC85938.1    APCN01000155    GDRN01052493    JAI66294.1    KQ414667    KOC64697.1    GDHC01008887    JAQ09742.1    GGMS01008862    MBY78065.1    GGMR01003770    MBY16389.1    GFXV01003115    MBW14920.1    ABLF02037818    KQ435863    KOX70404.1    DS235006    EEB10387.1    GBHO01039176    JAG04428.1   

Proteomes

UP000283053    UP000007151    UP000053268    UP000053240    UP000005204    UP000218220    + More
UP000192223    UP000007798    UP000069940    UP000249989    UP000008820    UP000001292    UP000001819    UP000008744    UP000007266    UP000002282    UP000008711    UP000000304    UP000000803    UP000235965    UP000009192    UP000192221    UP000268350    UP000002320    UP000078540    UP000078541    UP000005205    UP000078542    UP000075809    UP000075902    UP000075880    UP000242457    UP000005203    UP000008237    UP000076502    UP000092462    UP000053097    UP000279307    UP000076408    UP000008792    UP000076407    UP000007062    UP000075882    UP000007801    UP000001070    UP000075903    UP000000311    UP000091820    UP000030765    UP000075900    UP000007755    UP000078492    UP000075901    UP000075920    UP000215335    UP000075886    UP000092443    UP000078200    UP000092460    UP000092445    UP000075884    UP000092461    UP000027135    UP000000673    UP000245037    UP000075881    UP000092553    UP000075883    UP000069272    UP000015103    UP000075885    UP000075840    UP000095300    UP000053825    UP000007819    UP000053105    UP000009046    UP000095301   

PRIDE

H9IXC0   

Pfam

PF00071   Ras

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A3S2LJX8   A0A212FGE0   A0A194QJK6   A0A194R1I9   H9IXC0   A0A2A4JXN0   + More
A0A2H1V6S4   A0A1W4WX37   A0A0K8TSC2   B4MKS3   A0A182GB62   Q171U7   A0A0K8VID1   A0A034VUZ5   B4HJF6   A0A1Y1K7F3   Q29F84   B4H157   D6WU83   B4PG54   B3NFU9   B4QLL5   O18339   A0A2J7R7R5   B4L949   A0A1W4UEV9   A0A3B0KNT9   W8BL54   A0A1B6EPM2   A0A1Q3FHW3   B0VZC7   A0A195AWZ4   A0A195FDS0   A0A158NHW5   A0A195BY42   A0A151WQX2   A0A182U3T0   A0A182JLA0   A0A2A3EQE0   A0A088A0H0   A0A1L8DV38   E2C8L9   A0A154PIS5   A0A1B0D2Z4   A0A026WIK4   A0A182YEI1   B4LC99   A0A182WWW2   Q7QIV8   A0A0A1XC55   A0A182KQA5   A0A1L8DV60   B3M9D7   B4J201   A0A182VEW5   E2AV92   A0A0K8W5W4   A0A1A9W553   A0A084VZ37   A0A182RF51   F4X3B4   A0A1B6JZ11   A0A195EG47   A0A182SYD4   A0A182WLF4   A0A232F6X2   A0A182QJE0   A0A1B6LZK2   D3TNM5   A0A1A9XT22   A0A1A9VAQ0   A0A1B0B963   A0A1B0AIE5   A0A182NK87   A0A1B0CDW6   A0A067RNV5   W5JFD1   A0A2P8Y4R1   A0A182JZW8   A0A0M4EQA6   A0A182M476   A0A182FDG6   A0A2M4C002   T1HAT8   A0A0V0GBR0   A0A069DPF8   A0A182P478   A0A182I2G0   A0A0P4WJI7   A0A1I8PB27   A0A0L7R1H3   A0A146LSJ5   A0A2S2QJY4   A0A2S2NGX9   A0A2H8TLN7   J9JMP7   A0A0N0BDF8   E0VAI1   A0A1I8MNV2   A0A0A9WD40  

PDB

2HUP     E-value=8.91297e-62,     Score=597

KEGG

101743709    K07930 Ras-related protein Rab-43 | (RefSeq) ras-related protein Rab-43

GO

GO:0005525   GO:0003924   GO:0005794   GO:0043025   GO:0060786   GO:0045202   GO:0035883   GO:0005789   GO:0032482   GO:0000139   GO:0006888   GO:0006886   GO:0016192   GO:0005096   GO:0031982   GO:0055037   GO:0004767   GO:0007264   GO:0003923   GO:0016255   GO:0042765   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01523

Exp number, first 60 AAs:

0.01032

Total prob of N-in:

0.09426

outside

1  -  217

 

 

Pi

171.680746

Theta

180.171404

Tajima's D

-0.356831

CLR

0.016939

CSRT

0.279086045697715

Interpretation

Uncertain