Gene

KWMTBOMO11471  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001898

Annotation

PREDICTED:_DNA-directed_RNA_polymerases_I?_II?_and_III_subunit_RPABC1_[Papilio_xuthus]

Location

Bomo_Chr19(+):6402267-6408015      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.668

CDS

ATGGATGATGACGCAGAAACTTACAAACTCTGGCGTATACGTAAAACTGTAATGCAGTTGTGCCATGACCGAGGATATTTAGTCACGCAAGATGAATTGGACCAAACTTTAGAACAATTTAAAGAGCAGTTTGGCGATAAACCAAGTGAGAAAAGACCAGCAAGAAGTGATTTGATTGTGTTAGTGGCTCATAATGATGATCCAACGGATCAGATGTTTGTTTTCTTTCCTGATGAAGCTAAAATTGGTATAAAAACTATAAAGACATATTGTACAAGAATGCAAGAAGAGAATATTCATAGGGCTATTGTTGTTGTACAGGCGGGAATGTCACCATCAGCTAAACAGTCACTGGTTGATATGGCACCCAAATACATTCTAGAACAGTTCCTTGAATCGGAACTACTGATTAATATAACCGAACACGAGTTGGTACCGGAACATATTGTGCTGACACCGGATGAAAAGCAAGAACTCTTGGCAAGATATAAGCTGAAAGAGAACATGTTGATGAGAATACAAGCAGGTGACCCTGTGGCGAGATACTTTGGACTTAAAAGAGGACAGGTGGTGAAGATCATAAGATCATCGGAAACAGCCGGGCGGTACATTTCGTATAGATTAGTTTGTTAA

Protein

MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLVC

Uniprot

A0A194QWP0   A0A3S2M0G9   A0A1E1WCM1   A0A194QQA8   S4NXC5   A0A212EPW3   + More
A0A2A4JKW6   A0A1Q3F2X9   A0A182YQP3   A0A182PVQ0   A0A182M380   A0A182QKU3   A0A182UR07   A0A182NNS7   A0A182JSM3   B0X7A5   A0A182U1H8   A0A182W8I1   A0A084W3Z7   Q16R36   A0A182IW93   A0A182LBU2   A0A182XH94   Q7PJW8   A0A182R1Q6   A0A182HR16   A0A023EJM5   A0A0K8U5S6   A0A034WR72   A0A0L0C334   A0A1A9WJ50   T1DQG1   A0A2M3ZI83   A0A2M4ANZ8   A0A2M4BZJ4   W5JH53   A0A182FN39   A0A0K8TRM6   U5EVR4   W8AAL4   A0A1I8P3M6   A0A1L8EH68   T1P9P5   A0A1A9YB99   A0A1A9ZAF1   D3TN77   T1GLF7   A0A336L150   A0A034WST9   A0A1A9ZKR1   D3TN78   A0A1W4XBY6   J3JUD2   A0A0T6ATU5   A0A1B6JNM7   A0A2P8Y6J6   A0A1A9V2C6   A0A1W4UHR1   B4P7M3   B4HN25   B3NN28   B4NSD0   Q7JZF5   B3MEP0   A0A1A9VUK5   A0A2A3EDK6   V9IKE5   A0A087ZXD1   A0A310S917   A0A1Y1KLJ8   A0A3B0JSX4   B5DLL1   B4GWA8   K7IXW8   B4MK71   A0A026WTN4   A0A0P4W1M6   A0A069DXA1   R4FPV5   B4J892   A0A0M4ETA1   A0A0L7REY5   B4MDT8   B4KPZ3   A0A1L8DH22   A0A195ENV9   F4WRU8   A0A195FLJ4   A0A158NEL2   A0A232EQH7   A0A023F9Y7   A0A2R7W0C0   A0A0J7P4C8   A0A0A9YF19   E0VSA8   A0A195BYR0   E9IJA7   D6WR76   A0A151XIR1   A0A2S2R3R9  

Pubmed

26354079    23622113    22118469    25244985    24438588    17510324    + More
20966253    12364791    14747013    17210077    24945155    26483478    25348373    26108605    20920257    23761445    26369729    24495485    25315136    20353571    22516182    23537049    29403074    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28004739    15632085    20075255    24508170    30249741    27129103    26334808    21719571    21347285    28648823    25474469    25401762    26823975    20566863    21282665    18362917    19820115   

EMBL

KQ461073    KPJ09724.1    RSAL01000086    RVE48301.1    GDQN01006324    JAT84730.1    + More
KQ458575    KPJ05706.1    GAIX01014235    JAA78325.1    AGBW02013366    OWR43519.1    NWSH01001178    PCG72234.1    GFDL01013158    JAV21887.1    AXCM01000301    AXCN02001979    DS232445    EDS41858.1    ATLV01020242    KE525296    KFB44941.1    CH477725    EAT36874.1    AXCP01002893    AAAB01008980    EAA43596.1    APCN01001632    JXUM01053344    JXUM01122192    GAPW01004352    KQ566577    KQ561772    JAC09246.1    KXJ70007.1    KXJ77591.1    GDHF01030315    JAI21999.1    GAKP01002110    JAC56842.1    JRES01000956    KNC26758.1    GAMD01002519    JAA99071.1    GGFM01007434    MBW28185.1    GGFK01009180    MBW42501.1    GGFJ01009358    MBW58499.1    ADMH02001511    GGFL01004216    ETN62245.1    MBW68394.1    GDAI01000810    JAI16793.1    GANO01000900    JAB58971.1    GAMC01021655    JAB84900.1    GFDG01000850    JAV17949.1    KA645419    AFP60048.1    CCAG010007318    EZ422879    ADD19155.1    CAQQ02039685    UFQS01001431    UFQT01001431    SSX10850.1    SSX30530.1    GAKP01002109    JAC56843.1    CCAG010000304    EZ422880    ADD19156.1    APGK01028604    BT126845    KB740694    KB632300    AEE61807.1    ENN79444.1    ERL91742.1    LJIG01022867    KRT78315.1    GECU01006949    GECU01003105    JAT00758.1    JAT04602.1    PYGN01000867    PSN39879.1    CM000158    EDW90058.1    CH480816    EDW47329.1    CH954179    EDV56548.1    CH982158    CM002911    EDX15508.1    KMY92890.1    AE013599    AY071329    AAF58728.1    AAL48951.1    AGB93411.1    CH902619    EDV35504.1    KZ288288    PBC29309.1    JR051888    AEY61583.1    KQ763581    OAD54913.1    GEZM01080240    JAV62279.1    OUUW01000003    SPP78580.1    CH379063    EDY72413.1    CH479194    EDW26992.1    CH963846    EDW72510.1    KK107109    QOIP01000008    EZA59372.1    RLU19533.1    GDKW01001039    JAI55556.1    GBGD01002920    JAC85969.1    ACPB03000221    GAHY01000699    JAA76811.1    CH916367    EDW01229.1    CP012524    ALC40700.1    KQ414608    KOC69393.1    CH940662    EDW58703.1    CH933808    EDW08095.1    GFDF01008363    JAV05721.1    KQ978625    KYN29584.1    GL888292    EGI63105.1    KQ981490    KYN41206.1    ADTU01013489    NNAY01002790    OXU20556.1    GBBI01000497    JAC18215.1    KK854215    PTY13193.1    LBMM01000137    KMR04789.1    GBHO01013901    GBRD01012833    GDHC01019122    JAG29703.1    JAG52993.1    JAP99506.1    DS235748    EEB16264.1    KQ978501    KYM93450.1    GL763764    EFZ19320.1    KQ971354    EFA07031.1    KQ982080    KYQ60313.1    GGMS01015197    MBY84400.1   

Proteomes

UP000053240    UP000283053    UP000053268    UP000007151    UP000218220    UP000076408    + More
UP000075885    UP000075883    UP000075886    UP000075903    UP000075884    UP000075881    UP000002320    UP000075902    UP000075920    UP000030765    UP000008820    UP000075880    UP000075882    UP000076407    UP000007062    UP000075900    UP000075840    UP000069940    UP000249989    UP000037069    UP000091820    UP000000673    UP000069272    UP000095300    UP000095301    UP000092443    UP000092445    UP000092444    UP000015102    UP000192223    UP000019118    UP000030742    UP000245037    UP000078200    UP000192221    UP000002282    UP000001292    UP000008711    UP000000304    UP000000803    UP000007801    UP000242457    UP000005203    UP000268350    UP000001819    UP000008744    UP000002358    UP000007798    UP000053097    UP000279307    UP000015103    UP000001070    UP000092553    UP000053825    UP000008792    UP000009192    UP000078492    UP000007755    UP000078541    UP000005205    UP000215335    UP000036403    UP000009046    UP000078542    UP000007266    UP000075809   

PRIDE

Q7JZF5   

Pfam

PF03871   RNA_pol_Rpb5_N        + More
PF01191   RNA_pol_Rpb5_C

Interpro

IPR039531   Rpb5-like        + More
IPR035913   RPB5-like_sf       
IPR036710   RNA_pol_Rpb5_N_sf       
IPR005571   RNA_pol_Rpb5_N       
IPR020608   RNA_pol_subH/Rpb5_CS       
IPR000783   RNA_pol_subH/Rpb5_C       
IPR020609   RpoH/RPB5       
IPR014381   DNA_RNA_pol_RPB5_euk/virus       

SUPFAM

SSF55287   SSF55287        + More
SSF53036   SSF53036       

Gene 3D

3.40.1340.10     3.90.940.20    

ProteinModelPortal

A0A194QWP0   A0A3S2M0G9   A0A1E1WCM1   A0A194QQA8   S4NXC5   A0A212EPW3   + More
A0A2A4JKW6   A0A1Q3F2X9   A0A182YQP3   A0A182PVQ0   A0A182M380   A0A182QKU3   A0A182UR07   A0A182NNS7   A0A182JSM3   B0X7A5   A0A182U1H8   A0A182W8I1   A0A084W3Z7   Q16R36   A0A182IW93   A0A182LBU2   A0A182XH94   Q7PJW8   A0A182R1Q6   A0A182HR16   A0A023EJM5   A0A0K8U5S6   A0A034WR72   A0A0L0C334   A0A1A9WJ50   T1DQG1   A0A2M3ZI83   A0A2M4ANZ8   A0A2M4BZJ4   W5JH53   A0A182FN39   A0A0K8TRM6   U5EVR4   W8AAL4   A0A1I8P3M6   A0A1L8EH68   T1P9P5   A0A1A9YB99   A0A1A9ZAF1   D3TN77   T1GLF7   A0A336L150   A0A034WST9   A0A1A9ZKR1   D3TN78   A0A1W4XBY6   J3JUD2   A0A0T6ATU5   A0A1B6JNM7   A0A2P8Y6J6   A0A1A9V2C6   A0A1W4UHR1   B4P7M3   B4HN25   B3NN28   B4NSD0   Q7JZF5   B3MEP0   A0A1A9VUK5   A0A2A3EDK6   V9IKE5   A0A087ZXD1   A0A310S917   A0A1Y1KLJ8   A0A3B0JSX4   B5DLL1   B4GWA8   K7IXW8   B4MK71   A0A026WTN4   A0A0P4W1M6   A0A069DXA1   R4FPV5   B4J892   A0A0M4ETA1   A0A0L7REY5   B4MDT8   B4KPZ3   A0A1L8DH22   A0A195ENV9   F4WRU8   A0A195FLJ4   A0A158NEL2   A0A232EQH7   A0A023F9Y7   A0A2R7W0C0   A0A0J7P4C8   A0A0A9YF19   E0VSA8   A0A195BYR0   E9IJA7   D6WR76   A0A151XIR1   A0A2S2R3R9  

PDB

6GML     E-value=6.0311e-95,     Score=883

KEGG

101744152    K03013 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | (RefSeq) DNA-directed RNA polyme

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0003899   GO:0005634   GO:0006351   GO:0005665   GO:0006383   GO:0006366   GO:0005736   GO:0005666   GO:0006360   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

PANTHER

PTHR10535  

Length:

210

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00246

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15050

outside

1  -  210

 

 

Pi

156.891766

Theta

142.652459

Tajima's D

0.152649

CLR

0

CSRT

0.410729463526824

Interpretation

Uncertain