Silkworm Genome Informatics Database

Gene

KWMTBOMO11465

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr19(+):6234874-6241568 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.041 Nuclear Reliability : 1.245

CDS

ATGTCCTCAGCGCAATATTGTGCTCCGGACCGGTTCTGCACATTCCTTCGCTTGCGCATAGGGTGCCGTGAACAAAGAAGACTGCACACCGTGTTCCCGTTTCCCACCTTTGCTGGACAAAGTGTGTGTGAAGCGGGAGAGGGCTCCCTTCTGGAGCCCTCTTGGATGCTAGGCCATGTCCCCGGCAGCTCTTTGGCTGCTAAAGGGGAAGGCCCTCCAGAGGAGGGTACCGGAGGGTACCACTCTAGGTGGAGAATCCCTCCGTGCTTCCACCTCGGTGGGAGCATGCTGCCCCACGTATTCTGGGGGGGCAAAGCATGCCACGATGAAGGGGGCTGTGCGACGGGCAGCGGAAAACCCGTCGAACTGAGGGAGACCCGCTCGGGGAAGGGCGCACCGTCACCGGCGCCGTCATCGGCGTCGATGTCTGTCGCCTCGCTGGACGGGCGGACGACGGAAGAGGAGGAGGGCGGTCTTCGGGACCCTGCCTTGGTCATAGGCAGGGCCATGAAGACCGTCAAGTCGTATGCGGCGACCAGTGCCAAAACCAAAGCTGCTGGCCGCAGGCTGCGGGAAGTCGTCTCGCGAGTCTCGAAGGTTCTGCCTTCGGTTGCTTCCGCCAATGACCAGGTGGTGCAGCTGATGGCGGAGAATTTGAGGCTCCGAGCACAGCTACAGGCGCAGCAGCGGCCCGATGGCAAGGTTGCTGCTACCAAGCGGGTAGCCGCGACGAGGTCGTCGCCCGCGTTGCCACGTGCCGCTGGGTCGCGGACTCCTCCGGCATCTGTGCCGGCGGTGTCGCCGCTGGTCTCCGGGGTCCCTCGGGGTCCCTGTCCCTCAGCGGCGGCTGGCGACCCGTGGCCCGTGCTGCCACCATCGCGCGCGGTACAGCGGCATTCGCGTCTCCCGTCGCCGCGGTCTAGGGAGGCGACGGCCGTCGAGCGGCAGCAGGGATCCGCGGGGCCACGGATCGTGGGCCTGCCGGAACCGAATTGCTACAGCCTGGACGAGATTATCGATCGCACCGTCCAGGCTGTAATGGAAAGGCTGGGTGGCGGGCTGGCGGCTCTCGAAGCGAAACGTATTGTCGCTAGTGACGCTGAACGGCCTGCGTCTACACATGCCGCGGTGTCGGGTGCTGCAGTGACCCGCTCCACCCCCGTACAGGCTCCAGCCACTAGGGCGGGCCCGGGACGAGACAGAGCCAAGCGGGGGGGCGGCGCTAACGCGAAGTGCACATCGCAAGCGCCTCAACCCCGTCCGCTGCCCCCGCCCCCGTCTAACATGGACGAGGGGTGGAATGTGGTGGCCCGGCGGGGTGCCAAGAGGGCCGTACCGACAGCTCCCCAAGTGGGTGGAGCACCGGCCACTGCGGCGTCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTGGCCGCCAACAAGAAAAAGAAGACGAAGAAGAAGTCGTCGCGCGCGCCGCGGTCGGCGGCAGTGGTCTTAACGCTGCTGCCGGCCGCCGAGGCCAAGGGCGTGTCATACGGAGATGTAGTCTCCCGGGCGCGCGCGGCTATTGATCTGGACGAGATCGGGGCGGGGGAGGGCCTCCGCTGTAGGCTGACGGCGAATGGGGCCAAGCTGCTGGAGTGTCCCGGTGCCGATAGTTCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTACGGTTCTGCCTGAGGAGGAGGTTCGAGTGCACAGGCCGGTCAAAATGGCTGAATTGAGAGTGACCGGCCTGGACGACTGCACCACTAAGGATGAGGTGGCGGCGGCTATTGCCGCCCGGGGCAACTGCGCCCTGGAGAATATAACTGTAGGCGAGCTGCGCCTCGGTTATACCGGGGCTGGCTCTGTTTGGGTGCGTTGCCCGGTAGAGGCGGCCACCTCCTTGGCTGCTCCTCCGCCCGGGAGACCGTCGGGGGAACCGGGCAGGTTGCGCGTGGGCTGGATAGCGGCCCGCGTGCGCCTTCTCGAACCACGCGCCTGGCGGTGCTTCAGATGCTTCAGCACTGGGCACTGCCTCGCAAAATGCGCGAGTGCGGTTGACCGCAGCGGATTGTGCTTTCGCTGTGGTCAGCCGGGACACAAGGCGGCCGTGTGCTCGGCTGCGCCGCATTGCTTATTATGTGCGGCGGCCGGGCGCAAGGCTGACCACCGGGCCGGGGGCAAGGCCTGCCCTCCGGCCAGCAAGAATGCTGAACGAAATCGGCGCCGCCAAGCTAAGCGGCGTCAAAAGAAGCGGTTGGCCGGGGGAGCACCGGCCGGCACTTTGTCCCCCGCTGAGGCGTTCGCGCCCGATAGCGGGGGCAATGGAGTAGGGGAGGGAGCGATGGATGGAAACTTGAACCACTCCGCTGGGGCTCAGGACATGTTGCTCCAGACCATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCATACTTCGTTCCCCCAGCGGATGACTGTTGGTTTGGGGACGTTGATGGCTTGGCGGCCATACATATCAGAAGAACCGCGATGGTCCCCCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAGTTAGAAAATATCGTCGTGATCGGGGTGTACTTTTCTCCGAATCGGCCTACCGTCGAGTTCGAGCGGTTCCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCGCTCCCCGTTCAGTGATACTGGCGGGGGACTTCAATGCGAAGTCTGTCGCTTGGGGTTCCCCATTCACGGACGCTCGTGGTAGGCTGCTGGAGGAGTGGGCGGTCGCGGTCGGTCTCTGTATCGTTAATAGGGGCTCGATCGCGACTTGCGTGCGGTGGACGGGCGAGTCTATCGTGGACCTGACGTTCGCGAGCTCGCCCGTCGCACGGCGCATCCTCGGCTGGAGAGTGGTGGTGGGGGCGGAATCGTTGTCCGATCACCGGTATATCCGGTACGATCTTTCTGCCCCTGCGCCGACGCCGGCTGCAGGTGCCCGCGGGGTTGACCCCCCGCAGAGTGCATCCCGGTCATTCCCTAGGTGGGCACTGAAGCTCCTGAACAGGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCGTGGGCGCCCAAGCGCCCACAACCTGTTGATGTGGAAACCGAGGCCGAATGGTTCCGGGGCGCGATGCACCGCATATGTGATGCTTCGATGCCCCGGGTCGGCTCTCGGCACTCTGGACGGCGACAGTCGCCCTGGTGGTCGCCCGAAATTGCAAGACTGCGTGCGGTCTCCATTCGGGCGAGCCGCCGGTGCACTAGACACCGCCGTCGCCGCCGCCTGCGGCGCGACGAGCCCGTCGCGTTCGCGGAGGAGGAAGCTCGGCTGCACCGCGAATATCGCGCTGCGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGATACTCTTGGAGGCGCTCGAGGCGGATCCGTGGGGGAGCCCATACAAATTGGTACGCGGCAAGTTGCGCCCGTGGGCCCCCTCTATGACTGAGCGTCTCCAGCCCCAGCAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGAGGGTTTTGTCCCTCCCGCTATGGGCGGGCCGTCTGACACCGTCGACGGCCAAGCTCCTGCTGAGGTGCCCCGTATTACCGAGGCAGAGCTCCGGGTGGCCGTTGTCAAGATGACTGCGAAAGACACGGCCCCCGGCCCGGACGGAGTCCACGGCCGGGTATTGGCCTTGGCCCTCGGTGCCCTGGGGGACCGGCTCCTTGAGCTATACAATGGCTGCTTGGAGTCGGGACGGTTTCCGTCGCTCTGGCGGACGGGTAGACTTGTGTTGTTGAGGAAGGAGGGGCGCCCGGTGGATACAGCCGCTGGGTATCGTCCTATCGTGCTGCTGGACGAGGCGGGAAAATTGCTGGAACGTATTCTGGCTGCCCGCATCGTTCGGCACCTGGTCGGGGTGGGGCCTGACCTGTCGGCGGAGCAGTACGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCAATTCTTCGCGTGCGGTCCCTCTCGGACGAGGCCGTTTCTCGGGGTGGGGTGGCGCTGGCGGTGTCTCCTGACATCGCCAACGCATTTAACACTCTGCCCTGGACCGTGATAGGGGGGGGCACTGGAGAGGCATGGAGTGCCCCTCTACCTCCGCCGGCTGGTTGGGTCCTATTTGGCGGCCAGGGGTCGGTTCTCGGCCCCCTCTTGTGGAATATCGGGTACGACTGGGTGCTGAGGGGCGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGTGGACGACACGTTGGTCGTGGCCCGGGGGGATGATTTTAGGGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGAAGGATAAGGAGTCTGGGTCTCGACGTGGCGCTCAGTAAATCCGAGGCTCTGTGGTTTCACGGGCCGCGGAGGGCGCCACCAGTTGACACCCACATCGTGGTTGGAGGCGTCCGGATAGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCTTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGGGGACGGCCGGTTCTTTGAGCCGGCTACTCCCGAATATTGGGGGACCGGATCAGGTTGTGCGCCGCCTCTACGCGGGGGTGGTGCGATCGATGGCCCTGTACGGTGCACCTGTGTGGGCTGAGCCGCGCAACCGGGCCACTATGGCTCGGTTCCTGCGCCGGCCGCAGCGCACCGTTGCCATCAGGGTCATCCGCGGATATCGCACCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTCCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MSSAQYCAPDRFCTFLRLRIGCREQRRLHTVFPFPTFAGQSVCEAGEGSLLEPSWMLGHVPGSSLAAKGEGPPEEGTGGYHSRWRIPPCFHLGGSMLPHVFWGGKACHDEGGCATGSGKPVELRETRSGKGAPSPAPSSASMSVASLDGRTTEEEEGGLRDPALVIGRAMKTVKSYAATSAKTKAAGRRLREVVSRVSKVLPSVASANDQVVQLMAENLRLRAQLQAQQRPDGKVAATKRVAATRSSPALPRAAGSRTPPASVPAVSPLVSGVPRGPCPSAAAGDPWPVLPPSRAVQRHSRLPSPRSREATAVERQQGSAGPRIVGLPEPNCYSLDEIIDRTVQAVMERLGGGLAALEAKRIVASDAERPASTHAAVSGAAVTRSTPVQAPATRAGPGRDRAKRGGGANAKCTSQAPQPRPLPPPPSNMDEGWNVVARRGAKRAVPTAPQVGGAPATAASQAAPQQGRAPVAANKKKKTKKKSSRAPRSAAVVLTLLPAAEAKGVSYGDVVSRARAAIDLDEIGAGEGLRCRLTANGAKLLECPGADSSGIAERLAAKLRTVLPEEEVRVHRPVKMAELRVTGLDDCTTKDEVAAAIAARGNCALENITVGELRLGYTGAGSVWVRCPVEAATSLAAPPPGRPSGEPGRLRVGWIAARVRLLEPRAWRCFRCFSTGHCLAKCASAVDRSGLCFRCGQPGHKAAVCSAAPHCLLCAAAGRKADHRAGGKACPPASKNAERNRRRQAKRRQKKRLAGGAPAGTLSPAEAFAPDSGGNGVGEGAMDGNLNHSAGAQDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRTAMVPPLAMVTRGPGIVAVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVILAGDFNAKSVAWGSPFTDARGRLLEEWAVAVGLCIVNRGSIATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLSDHRYIRYDLSAPAPTPAAGARGVDPPQSASRSFPRWALKLLNRELLVEASMVAAWAPKRPQPVDVETEAEWFRGAMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRASRRCTRHRRRRRLRRDEPVAFAEEEARLHREYRAAKDALRLAIRRAKEQNMEILLEALEADPWGSPYKLVRGKLRPWAPSMTERLQPQQLRDIVSALFPQEREGFVPPAMGGPSDTVDGQAPAEVPRITEAELRVAVVKMTAKDTAPGPDGVHGRVLALALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVRHLVGVGPDLSAEQYGFREGRSTVDAILRVRSLSDEAVSRGGVALAVSPDIANAFNTLPWTVIGGGTGEAWSAPLPPPAGWVLFGGQGSVLGPLLWNIGYDWVLRGALLPGLRVICYVDDTLVVARGDDFRESARLATAGVALVVGRIRSLGLDVALSKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Uniprot

A0A0J7KQK3 A0A0J7N0R3 A0A0J7NFZ0 A0A0J7KFH2 A0A3S2LNH8 J9KJG8 + More
X1WZ64 X1WJY4 A0A139W940 A0A139W9B3 A0A139W939 J9KM84 J9K6F0 A0A139WAH4

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 LBMM01005474 KMQ91485.1 + More
LBMM01008278 KMQ89009.1 RSAL01003504 RVE40273.1 ABLF02041886 ABLF02011183 ABLF02041884 ABLF02011238 KQ972691 KXZ75806.1 KQ972544 KXZ75869.1 KXZ75807.1 ABLF02018942 ABLF02041885 ABLF02012448 ABLF02012450 ABLF02012455 ABLF02012460 KQ971388 KYB24913.1

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B
IPR000663   Natr_peptide

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7N0R3 A0A0J7NFZ0 A0A0J7KFH2 A0A3S2LNH8 J9KJG8 + More
X1WZ64 X1WJY4 A0A139W940 A0A139W9B3 A0A139W939 J9KM84 J9K6F0 A0A139WAH4

PDB

1WDU E-value=5.78154e-11, Score=169

KEGG

105842864 no KO assigned | (RefSeq) skin secretory protein xP2-like

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0005179 GO:0005576 GO:0005488 GO:0004180 GO:0007016 GO:0016010 GO:0016740 GO:0003707 GO:0006418 GO:0003824

Length:

1823

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02044

Exp number, first 60 AAs:

0.00233

Total prob of N-in:

0.00018

outside

1 - 1823

Pi

118.352342

Theta

110.294853

Tajima's D

0

CLR

152.933891

CSRT

0.372381380930953

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree