Gene

KWMTBOMO11464

Pre Gene Modal

BGIBMGA001923

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Chr19(-):6211780-6227553      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.539

CDS

ATGGACTGGTTGCAATCAGACAATACACCAGTGGCATCACTGTCCGGACTCCGGCAGATCCTGAAGAACGGCTCCCTGGAGATACTTCCCTTCACAGCGGAACTGTACCGGCACGATGTCCATGCGACCGTATACAGATGCAGGATGCGGTCCAGTGTTGGGTATATTGCGATGTCCAAGAACATACATGTATACGCAGCTCTCAGCTCACCATGGGAGGTTCACGTGCCGGACGAATACGTGATAGCTGGTAACGCGGTGGTGCTGAGATGTGTGGTCCCACCACACTGCGCCGACCGCATTTCTAGTACAGAGTGGCTTAACGACGACGATATAAACGTACTTCATTATTTAGGGTCGAAATATCATCGGCTCGACGACGGTTCGCTGTACATAAGCGCCGTCAGTACCAGCGATCGACATAACCGGTTTTTATGTCGAGTTCGGGACAAGATCACTGGGAATACGTACAGCAGTCAATACTTTGGTCACGTAATAGTGACAGAACCAAAAGGAGGCGTAAAGCCGCGCGTGTCTGTGGAACAACGCTCCAGGCGGATCCGTGTCGGACAAGATGTCCGTCTGCCGTGTGCCGTTCATGCGTGGCCTGTGCCTACTTACAGATAA

Protein

MDWLQSDNTPVASLSGLRQILKNGSLEILPFTAELYRHDVHATVYRCRMRSSVGYIAMSKNIHVYAALSSPWEVHVPDEYVIAGNAVVLRCVVPPHCADRISSTEWLNDDDINVLHYLGSKYHRLDDGSLYISAVSTSDRHNRFLCRVRDKITGNTYSSQYFGHVIVTEPKGGVKPRVSVEQRSRRIRVGQDVRLPCAVHAWPVPTYR

Uniprot

H9IXE0   A0A2A4JRN9   A0A3S2L8U0   A0A212FFV2   A0A194QW73   A0A194QJF6   + More
A0A1B6E8M4   A0A1Y1MTZ7   A0A067QTQ1   U4UG99   A0A139WFA9   A0A139WFM8   A0A2J7RGV1   A0A2J7RGU9   A0A2J7RGW1   A0A1B0GF86   A0A1W4WTF1   A0A1I8PB73   A0A0K8UUX7   Q059C2   A0A0P8Y8Q8   T1I784   A0A0P8ZTJ5   B4LCA4   A0A0P9C2D6   A0A0R1DVD6   B5DP20   A0A0N8P0R1   A0A0R3P2D3   A0A0Q9WSH9   A0A1J1HZE7   A0A0P8YFX7   A0A0Q9WT95   A0A0R1DVF9   A0A0Q5UHZ7   B3NFV2   A0A0R3P7K2   A0A0R3P6F9   A0A0R1DV25   A0A0J9UGY6   M9PHS6   A0A0J9UGY0   A0A0J9RSP6   A0A0Q5U2Y4   A0A0J9RRI5   A0A0R1E0L9   A0A0J9RR38   B7Z0D9   A0A0Q5U5J1   A0A0J9RRI2   Q0E8G9   A0A0R1E1F0   W8AXT7   A0A0Q9WUU0   A0A0Q5U9T5   A0A0J9RR87   B4PG57   A0A0Q9WH95   A0A1W4UFB0   A0A1W4UTY0   A0A0J9RR90   A0A1W4US69   A0A1W4UES4   A0A1W4USF0   A0A1W4US63   A0A0R1DV58   A0A0Q5U3A0   B4L943   A0A0Q9XGR9   A0A0Q9XGS9   A0A0Q9XRS4   A0A3B0KGJ4   B4MKS0   A0A0L0CAC8   A0A2S2R5A3   A0A195F297   A0A195BDC5   A0A151WXY3   A0A151IXZ3   A0A195D3A0   T1JAC9   A0A344AR44   A0A158NZR2   E2A917   J9JNA7   A0A2S2PAZ8   A0A0A9XMP0   T1JAD1   Q0E9L6   Q0E9K5   A0A1I8Q6J9   A0A0B4K6Z3   A0A2A3ET47   A0A088AE82   Q0E9H6   A0A3L8D716   A0A026W4K3   A0A1I8Q6P2   Q0E9H8  

Pubmed

19121390    22118469    26354079    28004739    24845553    23537049    + More
18362917    19820115    17994087    17550304    15632085    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    26108605    21347285    20798317    25401762    27386517    30249741    24508170   

EMBL

BABH01018019    BABH01018020    NWSH01000814    PCG74080.1    RSAL01000086    RVE48303.1    + More
AGBW02008761    OWR52615.1    KQ461073    KPJ09727.1    KQ458575    KPJ05703.1    GEDC01003017    JAS34281.1    GEZM01027026    JAV86857.1    KK853284    KDR08985.1    KB632281    ERL91363.1    KQ971352    KYB26606.1    KYB26607.1    NEVH01003751    PNF40052.1    PNF40058.1    PNF40057.1    CCAG010012772    GDHF01021810    JAI30504.1    BT029046    ABJ16979.1    CH902618    KPU77833.1    ACPB03001737    KPU77832.1    CH940647    EDW68749.2    KPU77831.1    CM000159    KRK01033.1    CH379067    EDY73270.2    KPU77828.1    KRT07342.1    KRF83999.1    CVRI01000035    CRK92906.1    KPU77830.1    KRF83998.1    KRK01029.1    CH954178    KQS43472.1    EDV50714.2    KRT07344.1    KRT07343.1    KRK01030.1    CM002912    KMY98330.1    AE014296    AGB94266.1    AGB94267.1    KMY98325.1    KMY98326.1    KMY98329.1    KQS43471.1    KMY98332.1    KRK01028.1    KMY98331.1    ACL83264.1    KQS43468.1    KMY98327.1    ABI31245.2    ACL83263.1    KRK01031.1    GAMC01016932    JAB89623.1    KRF84000.1    KQS43469.1    KMY98328.1    EDW93201.2    KRF83997.1    KMY98333.1    KRK01032.1    KQS43470.1    CH933816    EDW17218.2    KRG07680.1    KRG07679.1    KRG07678.1    OUUW01000012    SPP87530.1    CH963847    EDW72776.2    JRES01000681    KNC29207.1    GGMS01016006    MBY85209.1    KQ981856    KYN34700.1    KQ976511    KYM82576.1    KQ982656    KYQ52738.1    KQ980791    KYN13130.1    KQ976956    KYN06844.1    JH431989    MF066901    AWX42180.1    ADTU01004921    ADTU01004922    ADTU01004923    ADTU01004924    ADTU01004925    ADTU01004926    ADTU01004927    ADTU01004928    ADTU01004929    ADTU01004930    GL437704    EFN70076.1    ABLF02040815    ABLF02040826    GGMR01014008    MBY26627.1    GBHO01022380    JAG21224.1    AE013599    ABI31055.1    ABI31061.1    AFH07926.1    KZ288192    PBC34386.1    ABI31076.1    QOIP01000012    RLU16069.1    KK107488    EZA49974.1    ABI31045.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    + More
UP000027135    UP000030742    UP000007266    UP000235965    UP000092444    UP000192223    UP000095300    UP000007801    UP000015103    UP000008792    UP000002282    UP000001819    UP000183832    UP000008711    UP000000803    UP000192221    UP000009192    UP000268350    UP000007798    UP000037069    UP000078541    UP000078540    UP000075809    UP000078492    UP000078542    UP000005205    UP000000311    UP000007819    UP000242457    UP000005203    UP000279307    UP000053097   

PRIDE

H9IXE0    Q059C2    Q0E8G9    Q0E9L6    Q0E9K5    Q0E9H6    + More
Q0E9H8   

Pfam

PF07679   I-set        + More
PF00041   fn3
PF00047   ig
PF18701   DUF5641
PF12355   Dscam_C

Interpro

IPR013783   Ig-like_fold        + More
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR013098   Ig_I-set       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR013151   Immunoglobulin       
IPR027417   P-loop_NTPase       
IPR008921   DNA_pol3_clamp-load_cplx_C       
IPR040676   DUF5641       
IPR021012   Dscam_C       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       
SSF52540   SSF52540       
SSF48019   SSF48019       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9IXE0   A0A2A4JRN9   A0A3S2L8U0   A0A212FFV2   A0A194QW73   A0A194QJF6   + More
A0A1B6E8M4   A0A1Y1MTZ7   A0A067QTQ1   U4UG99   A0A139WFA9   A0A139WFM8   A0A2J7RGV1   A0A2J7RGU9   A0A2J7RGW1   A0A1B0GF86   A0A1W4WTF1   A0A1I8PB73   A0A0K8UUX7   Q059C2   A0A0P8Y8Q8   T1I784   A0A0P8ZTJ5   B4LCA4   A0A0P9C2D6   A0A0R1DVD6   B5DP20   A0A0N8P0R1   A0A0R3P2D3   A0A0Q9WSH9   A0A1J1HZE7   A0A0P8YFX7   A0A0Q9WT95   A0A0R1DVF9   A0A0Q5UHZ7   B3NFV2   A0A0R3P7K2   A0A0R3P6F9   A0A0R1DV25   A0A0J9UGY6   M9PHS6   A0A0J9UGY0   A0A0J9RSP6   A0A0Q5U2Y4   A0A0J9RRI5   A0A0R1E0L9   A0A0J9RR38   B7Z0D9   A0A0Q5U5J1   A0A0J9RRI2   Q0E8G9   A0A0R1E1F0   W8AXT7   A0A0Q9WUU0   A0A0Q5U9T5   A0A0J9RR87   B4PG57   A0A0Q9WH95   A0A1W4UFB0   A0A1W4UTY0   A0A0J9RR90   A0A1W4US69   A0A1W4UES4   A0A1W4USF0   A0A1W4US63   A0A0R1DV58   A0A0Q5U3A0   B4L943   A0A0Q9XGR9   A0A0Q9XGS9   A0A0Q9XRS4   A0A3B0KGJ4   B4MKS0   A0A0L0CAC8   A0A2S2R5A3   A0A195F297   A0A195BDC5   A0A151WXY3   A0A151IXZ3   A0A195D3A0   T1JAC9   A0A344AR44   A0A158NZR2   E2A917   J9JNA7   A0A2S2PAZ8   A0A0A9XMP0   T1JAD1   Q0E9L6   Q0E9K5   A0A1I8Q6J9   A0A0B4K6Z3   A0A2A3ET47   A0A088AE82   Q0E9H6   A0A3L8D716   A0A026W4K3   A0A1I8Q6P2   Q0E9H8  

PDB

4X8X     E-value=1.33022e-34,     Score=363

KEGG

101743862    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0030017   GO:0003677   GO:0006260   GO:0007155   GO:0005887   GO:0042802   GO:0003823   GO:0021551   GO:0007422   GO:0048846   GO:0043025   GO:0016319   GO:0050770   GO:0048666   GO:0050976   GO:0007411   GO:0007413   GO:0032490   GO:0007419   GO:0006909   GO:0070593   GO:0042803   GO:0008046   GO:0048814   GO:0043005   GO:0030424   GO:0030425   GO:0005515   GO:0045892   GO:0005488   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

Length:

208

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02813

Exp number, first 60 AAs:

0.01234

Total prob of N-in:

0.08534

outside

1  -  208

 

 

Pi

27.190891

Theta

153.178689

Tajima's D

0.178681

CLR

0.688854

CSRT

0.419329033548323

Interpretation

Uncertain