Gene

KWMTBOMO11461

Pre Gene Modal

BGIBMGA001923

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Chr19(-):6180679-6201433      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.568 Mitochondrial   Reliability : 1.336 Nuclear   Reliability : 1.062

CDS

ATGCTAGCAAATAAATGGTTTTTTGAGCACCACGAGCAATTGACACCCATTGAAGAAACAACTCTTTGGAAACGAGCCCGACTTCTAGACGAGGGTCTCCTTTCCATACAGAAAGTGAGGCGGGAAGATGCGGGCAGATTCGTTTGCTGGTTGAATAACACGGTCGGCAGCGAGTCAGTCCATTTCACGCTTATAGTAACAGAACCTATATCCGTCCGTACAAAACCGGAAGTATTAAGAAGTAAACCAAAATCGGACATAGCGTTGGATTGCAAAGTCAATGGACACCCCATAGAGCTAGTTTACTGGCTCCATAACGGACGCACTCTTGAGCCTAACGAAAGAATTGAAATTCTAGAAGACGGATTAAGGTTACATATCAAGAATACGCACAAAGATGACCAAGGAATATATCAGTGTTTTGCAAGCAACGCCCGAGACCAAGCTTATGGAATGTCCGAATATTTGTTCGATGTGTCGGAGAGGTCGCGGGCAGTTGGAAACCGCTCAAGACGTGCTCCTTACGCTCGTAGCACCCACACACACGACACAGACTGGAACTTTACAGGAGTTAGAGAATCCAAACCGGAACTGGTGTACTGGTTTTCGGAGCAGACTCTTCAGCCTGGTCCGAGCGTGTCACTCAAGTGCGTGGCCATGGGACATCCGCCACCACAGTTCACTTGGTTACTGGACGGCTTTCCGATACCAACCAATTCTAGGTTCGTCGTAGGTCAACACGTTACGCTTCAAGACGATGTTGTCAGCCATCTTAACATCAGCCGCGTAACAGAGCAAGATGGCGGCGAGTATGCGTGTGTTGCGTCAAATACCGCGGGAAAAACTTCTCATGCAGCCAGAGTGAACGTCTACGGACTACCTTACATACGTGAGATGCCTAAAGTGACAGCTGTCGCTGGAACAGACTTACATATGAAATGCCCTGTCGCTGGATATCCCATAGAGTCCATAGGCTGGGAGAGAGATGGTCAAACTCTGCCATTAAACCGAAGACAGAAGGAGAAGACGCTGGGACCTACACCTGTAAAGCCTCTAATAGACAACGCCACGCTGCTAGAAGGGATGTCGAAGTTCAAATATTAG

Protein

MLANKWFFEHHEQLTPIEETTLWKRARLLDEGLLSIQKVRREDAGRFVCWLNNTVGSESVHFTLIVTEPISVRTKPEVLRSKPKSDIALDCKVNGHPIELVYWLHNGRTLEPNERIEILEDGLRLHIKNTHKDDQGIYQCFASNARDQAYGMSEYLFDVSERSRAVGNRSRRAPYARSTHTHDTDWNFTGVRESKPELVYWFSEQTLQPGPSVSLKCVAMGHPPPQFTWLLDGFPIPTNSRFVVGQHVTLQDDVVSHLNISRVTEQDGGEYACVASNTAGKTSHAARVNVYGLPYIREMPKVTAVAGTDLHMKCPVAGYPIESIGWERDGQTLPLNRRQKEKTLGPTPVKPLIDNATLLEGMSKFKY

Uniprot

A0A2H1WD51   A0A212FFV2   A0A2A4JRN9   A0A194QW73   A0A194QJF6   Q1RKW0   + More
Q059C2   A0A1A9UKS2   A0A182KQA3   B4H162   Q17F85   A0A182GLD2   B0VZC9   A0A1A9ZDY7   A0A1B0B432   B4J206   A0A0P8Y8Q8   W8AXT7   A0A0M4F109   B4L943   A0A0Q9WSH9   A0A0Q9XGS9   A0A0Q9XGR9   A0A0Q9WT95   A0A0Q9WUU0   A0A0Q9WH95   B4LCA4   A0A0K8UUX7   A0A0Q9XRS4   B4MKS0   B4HJF2   B3M9P0   A0A182I2F4   A0A0R1DV58   A0A0R1E1F0   A0A1W4UES4   A0A1W4US69   A0A0J9RRI5   A0A0Q5UHZ7   A0A0R1DVD6   A0A0P8ZTJ5   A0A0Q5U2Y4   A0A3B0KGJ4   A0A0N8P0R1   A0A0R3P7K2   A0A0R1DV25   A0A0J9UGY6   M9PHS6   A0A1W4UTY0   A0A0Q5U5J1   A0A1W4US63   A0A0J9RSP6   B4PG57   A0A0J9RR38   B7Z0D9   A0A0P8YFX7   A0A1W4USF0   A0A0R3P2D3   A0A1W4UFB0   A0A0Q5U9T5   A0A0P9C2D6   B3NFV2   A0A0J9UGY0   B5DP20   A0A0Q5U3A0   A0A0J9RR87   A0A0J9RR90   A0A0R1E0L9   A0A0J9RRI2   Q0E8G9   A0A0R1DVF9   A0A0R3P6F9   A0A182M143   A0A182WLE9   A0A182QEY1   A0A182NK93   A0A1I8Q679   Q7QIV4   A0A0L0CAC8   A0A084VZ31   A0A182IN23   A0A336LZZ1   N6TUG7   A0A182TX30   A0A182WWV7   A0A182V3N0   A0A182SZP4   A0A182YEH7   A0A1I8MUY5   A0A182P483   A0A1B0CC61   U4UG99   A0A182K7K9   A0A182FHC1   A0A1A9YAS4   W5JLF4   A0A1J1HZE7   A0A139WFM8   A0A139WFA9  

Pubmed

22118469    26354079    20966253    17994087    17510324    26483478    + More
24495485    17550304    22936249    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12364791    26108605    24438588    23537049    25244985    25315136    20920257    23761445    18362917    19820115   

EMBL

ODYU01007855    SOQ50993.1    AGBW02008761    OWR52615.1    NWSH01000814    PCG74080.1    + More
KQ461073    KPJ09727.1    KQ458575    KPJ05703.1    BT025100    ABE73271.1    BT029046    ABJ16979.1    CH479202    EDW30039.1    CH477273    EAT45200.1    JXUM01071810    JXUM01071811    JXUM01071812    JXUM01071813    KQ562684    KXJ75330.1    DS231813    EDS25710.1    JXJN01008160    JXJN01008161    CH916366    EDV95931.1    CH902618    KPU77833.1    GAMC01016932    JAB89623.1    CP012525    ALC44937.1    CH933816    EDW17218.2    CH940647    KRF83999.1    KRG07679.1    KRG07680.1    KRF83998.1    KRF84000.1    KRF83997.1    EDW68749.2    GDHF01021810    JAI30504.1    KRG07678.1    CH963847    EDW72776.2    CH480815    EDW40676.1    EDV39046.2    CM000159    KRK01032.1    KRK01031.1    CM002912    KMY98332.1    CH954178    KQS43472.1    KRK01033.1    KPU77832.1    KQS43471.1    OUUW01000012    SPP87530.1    KPU77828.1    CH379067    KRT07344.1    KRK01030.1    KMY98330.1    AE014296    AGB94266.1    AGB94267.1    KQS43468.1    KMY98326.1    KMY98329.1    EDW93201.2    KMY98331.1    ACL83264.1    KPU77830.1    KRT07342.1    KQS43469.1    KPU77831.1    EDV50714.2    KMY98325.1    EDY73270.2    KQS43470.1    KMY98328.1    KMY98333.1    KRK01028.1    KMY98327.1    ABI31245.2    ACL83263.1    KRK01029.1    KRT07343.1    AXCM01005272    AXCN02000424    AAAB01008807    EAA03949.4    JRES01000681    KNC29207.1    ATLV01018591    ATLV01018592    ATLV01018593    ATLV01018594    KE525239    KFB43225.1    UFQT01000340    SSX23380.1    APGK01054116    APGK01054117    APGK01054118    APGK01054119    APGK01054120    APGK01054121    KB741247    ENN72026.1    AJWK01006190    AJWK01006191    AJWK01006192    AJWK01006193    KB632281    ERL91363.1    ADMH02000830    ETN64931.1    CVRI01000035    CRK92906.1    KQ971352    KYB26607.1    KYB26606.1   

Proteomes

UP000007151    UP000218220    UP000053240    UP000053268    UP000078200    UP000075882    + More
UP000008744    UP000008820    UP000069940    UP000249989    UP000002320    UP000092445    UP000092460    UP000001070    UP000007801    UP000092553    UP000009192    UP000008792    UP000007798    UP000001292    UP000002282    UP000192221    UP000008711    UP000268350    UP000001819    UP000000803    UP000075883    UP000075920    UP000075886    UP000075884    UP000095300    UP000007062    UP000037069    UP000030765    UP000075880    UP000019118    UP000075902    UP000075903    UP000075901    UP000076408    UP000095301    UP000075885    UP000092461    UP000030742    UP000075881    UP000069272    UP000092443    UP000000673    UP000183832    UP000007266   

PRIDE

Q1RKW0    Q059C2    Q0E8G9   

Pfam

PF07679   I-set        + More
PF00041   fn3

Interpro

IPR036116   FN3_sf        + More
IPR013098   Ig_I-set       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR027417   P-loop_NTPase       
IPR008921   DNA_pol3_clamp-load_cplx_C       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF52540   SSF52540       
SSF48019   SSF48019       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A2H1WD51   A0A212FFV2   A0A2A4JRN9   A0A194QW73   A0A194QJF6   Q1RKW0   + More
Q059C2   A0A1A9UKS2   A0A182KQA3   B4H162   Q17F85   A0A182GLD2   B0VZC9   A0A1A9ZDY7   A0A1B0B432   B4J206   A0A0P8Y8Q8   W8AXT7   A0A0M4F109   B4L943   A0A0Q9WSH9   A0A0Q9XGS9   A0A0Q9XGR9   A0A0Q9WT95   A0A0Q9WUU0   A0A0Q9WH95   B4LCA4   A0A0K8UUX7   A0A0Q9XRS4   B4MKS0   B4HJF2   B3M9P0   A0A182I2F4   A0A0R1DV58   A0A0R1E1F0   A0A1W4UES4   A0A1W4US69   A0A0J9RRI5   A0A0Q5UHZ7   A0A0R1DVD6   A0A0P8ZTJ5   A0A0Q5U2Y4   A0A3B0KGJ4   A0A0N8P0R1   A0A0R3P7K2   A0A0R1DV25   A0A0J9UGY6   M9PHS6   A0A1W4UTY0   A0A0Q5U5J1   A0A1W4US63   A0A0J9RSP6   B4PG57   A0A0J9RR38   B7Z0D9   A0A0P8YFX7   A0A1W4USF0   A0A0R3P2D3   A0A1W4UFB0   A0A0Q5U9T5   A0A0P9C2D6   B3NFV2   A0A0J9UGY0   B5DP20   A0A0Q5U3A0   A0A0J9RR87   A0A0J9RR90   A0A0R1E0L9   A0A0J9RRI2   Q0E8G9   A0A0R1DVF9   A0A0R3P6F9   A0A182M143   A0A182WLE9   A0A182QEY1   A0A182NK93   A0A1I8Q679   Q7QIV4   A0A0L0CAC8   A0A084VZ31   A0A182IN23   A0A336LZZ1   N6TUG7   A0A182TX30   A0A182WWV7   A0A182V3N0   A0A182SZP4   A0A182YEH7   A0A1I8MUY5   A0A182P483   A0A1B0CC61   U4UG99   A0A182K7K9   A0A182FHC1   A0A1A9YAS4   W5JLF4   A0A1J1HZE7   A0A139WFM8   A0A139WFA9  

PDB

3DMK     E-value=9.02201e-63,     Score=609

KEGG

101743862    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0007155   GO:0005887   GO:0042802   GO:0003677   GO:0006260   GO:0030017   GO:0005515   GO:0045892   GO:0005488   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

Length:

367

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01097

Exp number, first 60 AAs:

0.00695

Total prob of N-in:

0.00785

outside

1  -  367

 

 

Pi

158.693554

Theta

163.80487

Tajima's D

-0.855402

CLR

0.906298

CSRT

0.16379181040948

Interpretation

Uncertain