Gene

KWMTBOMO11460

Pre Gene Modal

BGIBMGA001924

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Chr19(-):6153660-6179263      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.691

CDS

ATGGACGAATACAGCGCTTCGCTTGTGATAGAACAAGTGACGTCACTGCACAGCGGAAACTACACCTGCATCACGTCTAACGTGGCAGGGTCTGAGCGATACACCGTTCCACTGACAGTCAACGTACCACCACGATGGAGATTGGAACCGAGCGACATAGCTGTGGCAGCCGGACAAGACATCACGTTACAGTGTCAGGCAGACGGGTACCCGAAACCAACTATCACATGGAAAAAAGCCGTTGGAAATACACCCGGCGAATACAAGGATTTCATGTTCGAAGGCAATTCCCGAGTTTTAGATAACGGTTCGTTAGTTTTTGAGCGGGTGGCTAAAGAAAGCGAAGGGCATTATCTGTGCGAAGCGAGAAACGATATCGGCGCTGGACTGAGCAAGCTGATTTTCATCAAAGTCAATGCACCAGCACGATTTCCTATGAAAAGTAAGACAGTACAAGTTACTGCGGGCGAGGCTGCACATCTACAATGCGCTGCATCTGGAGACGCACCCCTGGAAGTCAGCTGGCGAAGTCCACACCACCACACGATAGCGCATCATTTGGATCAAAGGTACACGATTCGCGAACAAGTTCTGGACGACGGCTTGGTATCAGAGTTAAGCATTTTACAAACATACAGACAAGACACAGGAGCGCTCACATGCAGAGCGTCCAATGCTTATGGACAGGATGAGATGTTGATACATTTAGTTGTACAAGAGGTTCCTGAAATGCCAAAGAACATACGGGTAATTGATCAACAATCAAGGACCATACAGATATCTTGGACTCAACCATATGCAGGGAACAGTCCTATTATCAACTATATTGTGCAGTATAAAGAAGCTCCAGAATCGTGGCCATCAACACCGCAGAAGGTCATCGTCCCAGGAAGCGTAACGTCGGCCAGTGTTCAAAACTTACAACCGGCGACATCATACCACCTCCGGATAATCGCCGAGAACCGGCTGGGACAAAGTGAACCAAGTCAACCCGTGCAAGTTACCACTACGGAAGAAGTTCCAAGCGGCCCACCTCAGGACGTAAGAGTAGAAGCTAAAAGCTCTACAGAACTGATCGTAACTTGGGAACCACCCCAAAGAGATTTGTGGAATGGAAATATCTTGGGATATTATGTGGGATTTCAAGAGTTAAACAGTAACAGCACAGTTCTAATCGCCAGCGGCCCAGGAGGTGCTTCATACACTGTGAGGACGGTTGAGGGCGCCGGTACTGCTCGATCAAGAACCACTCTATCTGGTCTTCAGAAGCACGCCGCATATGCTGTTGTCGTTCAGGCTTATAACAGCAGAGGAGCTGGTCCTGCGTCTCCTCCAACAACTGCCACCACCATGGAAGATGTACCAAGCCTGCCGCCTGGTGCTCTACAATGCAATGCATTAAGTTCACAATCAGTCCGAGTTTCTTGGGAGCCTCCTCCTATGCGTGGGCGAAACGGCATACTTCAAGGATATAGAGTAACTTATGCCCCGGTGACCGATTGGTACGGTAACGAAGACGCAGTTACGAAGCAAATATCTGGACTACACACGACACTGTCTGGTCTGAGGCGATACACAAACTATTCCGTCACGGTCTGCGCTTTCACCGCTGCTGGCGACGGCGTACGGGCAGCACCTGTATATTGTCACACAGAGGAAGACGTACCCTCAGCTCCGGCGGACATCAAAGCAGCGGTTTCTTCTAGAAATAAAATATTGGTTTCATGGCTGCCACCGTCCTCTCCTAACGGCGTCCTGGTTGGCTATACTCTTTATATGAGTGTTATCGAAGATGGACGCGAGGAGGGCACCCACAAACGCATGCTGTCACCGAGTACACTCTCGCACGAAACGTCTCGGTCGCCTCCACGGGCCACTCACCAATTCTGGGTGTCGGCTTCTACGAGACTCGGGGAAGGAGAAGCCACGAGGGTCGTCACTGTTCTACCTTCCGACTCGGTACCCGCAAGAATAACGTCATTCAGCCGCAATATCGTAACTCCTTGGAAAGAGAATATTTCGTTGTCTTGCAACAAAGTCGGTGTGCCGGCCCCGGCGACCACGTGGACAATGAACGGCGTTGGCTTGGAGTCAACACTGAGAAAAAACGTGAGCAGCGATGGAACACTCACAATAAGCATGACACAGTCAGCGGACAGTGGTAATTACACGTGTTCAGTTGAGAACATTCACGGTCGGGACGAGGTGACGTATACCGTGGAAGTGAAGGTTCCCCCCCAGCCCCCCATACTGGCCGTTGTTGATTCGTACGCAGACTCCTTGCACCTCCAATGGAGTGATCAGGGAGACGGAGGCAGCCCTATTCTCGGATACGTGATCAACTATAAACGTGAACACGGCGATTGGGAAGAACTGCAAGTGGAGGCCGGCACTTCGGAGCACGTTCTGCCCAACTTGTGGTGTGGAACGCGCTACCAGCTGTACATAACGGCCTTCAATCGTATCGGAACTGGTCTTCCCTGTGACATCGTTCATGCCTATACCAAGGGCACTGTTCCCGTTAAACCGAAGCATTCGCAAATGATAACTCTGAACACTACGACGGTTACCGTGTGGCTGGACTCGTGGGGCGACGGAGGCTGCGGGATACTGTACTTTGTAATTGAATACAGAGAGATGAGTCAACCTCAGGTATGCTACCTGCTAATATGGATGAAAATAATATTTTTAAAATTCCCAAAACCAACTATTCACATTGTGATGTCTATGAGTTCCAGTAAACTCCCTGCTGACGTAAAAATCTAA

Protein

MDEYSASLVIEQVTSLHSGNYTCITSNVAGSERYTVPLTVNVPPRWRLEPSDIAVAAGQDITLQCQADGYPKPTITWKKAVGNTPGEYKDFMFEGNSRVLDNGSLVFERVAKESEGHYLCEARNDIGAGLSKLIFIKVNAPARFPMKSKTVQVTAGEAAHLQCAASGDAPLEVSWRSPHHHTIAHHLDQRYTIREQVLDDGLVSELSILQTYRQDTGALTCRASNAYGQDEMLIHLVVQEVPEMPKNIRVIDQQSRTIQISWTQPYAGNSPIINYIVQYKEAPESWPSTPQKVIVPGSVTSASVQNLQPATSYHLRIIAENRLGQSEPSQPVQVTTTEEVPSGPPQDVRVEAKSSTELIVTWEPPQRDLWNGNILGYYVGFQELNSNSTVLIASGPGGASYTVRTVEGAGTARSRTTLSGLQKHAAYAVVVQAYNSRGAGPASPPTTATTMEDVPSLPPGALQCNALSSQSVRVSWEPPPMRGRNGILQGYRVTYAPVTDWYGNEDAVTKQISGLHTTLSGLRRYTNYSVTVCAFTAAGDGVRAAPVYCHTEEDVPSAPADIKAAVSSRNKILVSWLPPSSPNGVLVGYTLYMSVIEDGREEGTHKRMLSPSTLSHETSRSPPRATHQFWVSASTRLGEGEATRVVTVLPSDSVPARITSFSRNIVTPWKENISLSCNKVGVPAPATTWTMNGVGLESTLRKNVSSDGTLTISMTQSADSGNYTCSVENIHGRDEVTYTVEVKVPPQPPILAVVDSYADSLHLQWSDQGDGGSPILGYVINYKREHGDWEELQVEAGTSEHVLPNLWCGTRYQLYITAFNRIGTGLPCDIVHAYTKGTVPVKPKHSQMITLNTTTVTVWLDSWGDGGCGILYFVIEYREMSQPQVCYLLIWMKIIFLKFPKPTIHIVMSMSSSKLPADVKI

Uniprot

A0A3S2NIB4   A0A2A4JFT4   A0A194QJF6   A0A194QW73   H9IXE1   A0A139WFA9   + More
A0A139WFM8   A0A2J7RGW1   A0A2J7RGU9   A0A067QTQ1   A0A1W4WTF1   N6TUG7   A0A2J7RGU1   A0A2J7RGU2   A0A2J7RGT6   W8AXT7   A0A1I8MUY5   B4MKS0   A0A0Q9XRS4   A0A0Q9XGS9   A0A1I8Q679   B4L943   A0A0Q9XGR9   A0A0M4F109   B4J206   A0A0R3P7K2   A0A0K8WLX5   A0A0R3P2D3   A0A1A9WLK6   A0A0Q9WT95   A0A182QEY1   B5DP20   B4LCA4   A0A0Q9WUU0   A0A0Q9WSH9   A0A3B0KGJ4   A0A0R3P6F9   A0A0K8UUX7   A0A182NK93   A0A1A9YAS4   A0A0P9C2D6   A0A0N8P0R1   A0A0P8XTB2   B3M9P0   A0A0P8YFX7   A0A0P8ZTJ5   A0A1A9ZDY7   A0A0J9UGY6   A0A182IN23   B4PG57   A0A0Q5U5J1   M9PHS6   A0A1W4UES4   A0A1W4UTY0   B4HJF2   A0A0Q9WH95   A0A182YEH7   A0A182SZP4   A0A182WWV7   A0A182V3N0   Q7QIV4   A0A182I2F4   A0A0J9UGY0   A0A0J9RRI2   A0A182TX30   A0A0J9RSP6   Q0E8G9   A0A1W4UFB0   A0A0R1DVF9   A0A0R1DV25   B3NFV2   A0A1W4USF0   A0A0J9RRI5   A0A182RF46   A0A0R1E0L9   A0A0R1E1F0   A0A084VZ31   A0A0J9RR38   A0A0J9RR90   B7Z0D9   A0A0R1DVD6   A0A182K7K9   A0A0Q5U9T5   A0A0Q5U3A0   A0A0Q5UHZ7   A0A182WLE9   A0A1W4US63   A0A1W4US69   A0A0R1DV58   A0A0Q5U2Y4   A0A0J9RR87   A0A182P483   B0VZC9   W5JLF4   Q17F85   A0A182FHC1   A0A182GLD2   A0A336LZZ1  

Pubmed

26354079    19121390    18362917    19820115    24845553    23537049    + More
24495485    25315136    17994087    15632085    22936249    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    12364791    24438588    20920257    23761445    17510324    26483478   

EMBL

RSAL01000086    RVE48304.1    NWSH01001679    PCG70434.1    KQ458575    KPJ05703.1    + More
KQ461073    KPJ09727.1    BABH01018020    BABH01018021    BABH01018022    BABH01018023    KQ971352    KYB26606.1    KYB26607.1    NEVH01003751    PNF40057.1    PNF40058.1    KK853284    KDR08985.1    APGK01054116    APGK01054117    APGK01054118    APGK01054119    APGK01054120    APGK01054121    KB741247    ENN72026.1    PNF40051.1    PNF40054.1    PNF40055.1    GAMC01016932    JAB89623.1    CH963847    EDW72776.2    CH933816    KRG07678.1    KRG07679.1    EDW17218.2    KRG07680.1    CP012525    ALC44937.1    CH916366    EDV95931.1    CH379067    KRT07344.1    GDHF01000227    JAI52087.1    KRT07342.1    CH940647    KRF83998.1    AXCN02000424    EDY73270.2    EDW68749.2    KRF84000.1    KRF83999.1    OUUW01000012    SPP87530.1    KRT07343.1    GDHF01021810    JAI30504.1    CH902618    KPU77831.1    KPU77828.1    KPU77829.1    EDV39046.2    KPU77830.1    KPU77832.1    CM002912    KMY98330.1    CM000159    EDW93201.2    CH954178    KQS43468.1    AE014296    AGB94266.1    AGB94267.1    CH480815    EDW40676.1    KRF83997.1    AAAB01008807    EAA03949.4    KMY98325.1    KMY98327.1    KMY98326.1    KMY98329.1    ABI31245.2    ACL83263.1    KRK01029.1    KRK01030.1    EDV50714.2    KMY98332.1    KRK01028.1    KRK01031.1    ATLV01018591    ATLV01018592    ATLV01018593    ATLV01018594    KE525239    KFB43225.1    KMY98331.1    KMY98333.1    ACL83264.1    KRK01033.1    KQS43469.1    KQS43470.1    KQS43472.1    KRK01032.1    KQS43471.1    KMY98328.1    DS231813    EDS25710.1    ADMH02000830    ETN64931.1    CH477273    EAT45200.1    JXUM01071810    JXUM01071811    JXUM01071812    JXUM01071813    KQ562684    KXJ75330.1    UFQT01000340    SSX23380.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000053240    UP000005204    UP000007266    + More
UP000235965    UP000027135    UP000192223    UP000019118    UP000095301    UP000007798    UP000009192    UP000095300    UP000092553    UP000001070    UP000001819    UP000091820    UP000008792    UP000075886    UP000268350    UP000075884    UP000092443    UP000007801    UP000092445    UP000075880    UP000002282    UP000008711    UP000000803    UP000192221    UP000001292    UP000076408    UP000075901    UP000075903    UP000007062    UP000075902    UP000075900    UP000030765    UP000075881    UP000075920    UP000075885    UP000002320    UP000000673    UP000008820    UP000069272    UP000069940    UP000249989   

PRIDE

H9IXE1    Q0E8G9   

Pfam

PF07679   I-set        + More
PF00041   fn3

Interpro

IPR013098   Ig_I-set        + More
IPR036116   FN3_sf       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A3S2NIB4   A0A2A4JFT4   A0A194QJF6   A0A194QW73   H9IXE1   A0A139WFA9   + More
A0A139WFM8   A0A2J7RGW1   A0A2J7RGU9   A0A067QTQ1   A0A1W4WTF1   N6TUG7   A0A2J7RGU1   A0A2J7RGU2   A0A2J7RGT6   W8AXT7   A0A1I8MUY5   B4MKS0   A0A0Q9XRS4   A0A0Q9XGS9   A0A1I8Q679   B4L943   A0A0Q9XGR9   A0A0M4F109   B4J206   A0A0R3P7K2   A0A0K8WLX5   A0A0R3P2D3   A0A1A9WLK6   A0A0Q9WT95   A0A182QEY1   B5DP20   B4LCA4   A0A0Q9WUU0   A0A0Q9WSH9   A0A3B0KGJ4   A0A0R3P6F9   A0A0K8UUX7   A0A182NK93   A0A1A9YAS4   A0A0P9C2D6   A0A0N8P0R1   A0A0P8XTB2   B3M9P0   A0A0P8YFX7   A0A0P8ZTJ5   A0A1A9ZDY7   A0A0J9UGY6   A0A182IN23   B4PG57   A0A0Q5U5J1   M9PHS6   A0A1W4UES4   A0A1W4UTY0   B4HJF2   A0A0Q9WH95   A0A182YEH7   A0A182SZP4   A0A182WWV7   A0A182V3N0   Q7QIV4   A0A182I2F4   A0A0J9UGY0   A0A0J9RRI2   A0A182TX30   A0A0J9RSP6   Q0E8G9   A0A1W4UFB0   A0A0R1DVF9   A0A0R1DV25   B3NFV2   A0A1W4USF0   A0A0J9RRI5   A0A182RF46   A0A0R1E0L9   A0A0R1E1F0   A0A084VZ31   A0A0J9RR38   A0A0J9RR90   B7Z0D9   A0A0R1DVD6   A0A182K7K9   A0A0Q5U9T5   A0A0Q5U3A0   A0A0Q5UHZ7   A0A182WLE9   A0A1W4US63   A0A1W4US69   A0A0R1DV58   A0A0Q5U2Y4   A0A0J9RR87   A0A182P483   B0VZC9   W5JLF4   Q17F85   A0A182FHC1   A0A182GLD2   A0A336LZZ1  

PDB

3DMK     E-value=8.76247e-37,     Score=389

KEGG

101743862    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0030017   GO:0007155   GO:0005887   GO:0042802   GO:0005515   GO:0045892   GO:0005488   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

Length:

921

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.25745

Exp number, first 60 AAs:

0.00129

Total prob of N-in:

0.00010

outside

1  -  921

 

 

Pi

236.306519

Theta

146.848587

Tajima's D

1.410302

CLR

0.185289

CSRT

0.766111694415279

Interpretation

Uncertain