Gene

KWMTBOMO11459

Pre Gene Modal

BGIBMGA001924

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Chr19(-):6142338-6151553      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.999

CDS

ATGCTGACTGAAGTTATTTATTTACTAATTTTAGTGTTAGATGGAGACCTGTCTCCCCCTATACCGGCCGCTGGAGCCAGGTCTCTGGGTGGTGCACGCGTCATTCTGCCGGCAGCCCTGTCACTATTGGTCTTAGGAGCACTCATCGCCATAGTTCTGCTTGTTAAGCGCAACAAGACCGGCACGACTGAAACAGTGGCGACGGAGAGTGGCGTCGGGGAGTCTCCGTCTGTGGCGCAACTGCAGAACAAGGCGAACCGCGACCAGCAGTACCTCGCCGCCCGCGCCCAGCACCCGCCCCCGCAACACCACTACAAACACGCTTCCAACGAATACATAGAAGACATCTGTCCGTATGCAACATTCCAACTGACGAAACCGACAGCTTACAGCGAGAGTAGCTACAGCGGCAACGTGTACAGCGGCCCTTACCACTCCGTCAGAGGATCCTTCGTCTATCATGATCTCAAACAAAACGATAAATATAAGGGCAAAGAGCCAGAGTACACTAAAGTAAGAAGAAAAGGAACCAGACTCCGAGATCCGCATTCCGAGAGCCAAGAGTACGAGGACGACGCGAGCGACGACGCCAGCGCGCTCCACTCCGACAGCGAGCCGGCCGCGCGACTCCGACCGGCGCACCCCACTGCATATCCAACTGTAGAACGTGAGGAATCATCTTCGTCGTCGGAGAACTCGCTCGGTGGGGTCGTGAGGAAGGCTTTTCCCTCGAGGAAAGGGAAGGCGGGCGCGCTCGGCAAGCGCCACGTTAGATCTTCGAGCGGATACAGCAGTCACAATGACGAGACCACATTTAGTATATCAAACTACCCGTCGTTTAACGAGCACATCCATCCTCCCTCCCGCTTCTCAGACGACACAGATTGCGAGGGACATCACCGCCGGAAGAGGGCGCCGCATCCGCATCACGCGCCGCACCCAGGCGACCCCAAGATCACAAGGGAAGCATTCCAGATAAACATATGA

Protein

MLTEVIYLLILVLDGDLSPPIPAAGARSLGGARVILPAALSLLVLGALIAIVLLVKRNKTGTTETVATESGVGESPSVAQLQNKANRDQQYLAARAQHPPPQHHYKHASNEYIEDICPYATFQLTKPTAYSESSYSGNVYSGPYHSVRGSFVYHDLKQNDKYKGKEPEYTKVRRKGTRLRDPHSESQEYEDDASDDASALHSDSEPAARLRPAHPTAYPTVEREESSSSSENSLGGVVRKAFPSRKGKAGALGKRHVRSSSGYSSHNDETTFSISNYPSFNEHIHPPSRFSDDTDCEGHHRRKRAPHPHHAPHPGDPKITREAFQINI

Uniprot

H9IXE1   A0A3S2NIB4   A0A2H1WVD3   A0A212EVH8   A0A2A4JFT4   A0A194QW73   + More
A0A194QJF6   A0A0N8P0R1   A0A0R1DVF9   W8AXT7   B5DP20   A0A0R1DVD6   B4J206   A0A084VZ31   Q3ZAL9   A0A182YEH7   B4LCA4   B3NFV2   A0A0J9RRI2   Q0E8G9   A0A0Q9XGS9   A0A1I8Q679   A0A1I8MUY5   A0A0J9RR87   A0A2J7RGT6   A0A0L0CAC8   A0A2J7RGW1   Q7QIV4   A0A182IN23   A0A182FHC1   A0A182WLE9   A0A182SZP4   A0A182P483   A0A182WWV7   A0A182RF46   A0A182I2F4   A0A182GLD2  

Pubmed

19121390    22118469    26354079    17994087    17550304    24495485    + More
15632085    24438588    25244985    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    26108605    12364791    26483478   

EMBL

BABH01018020    BABH01018021    BABH01018022    BABH01018023    RSAL01000086    RVE48304.1    + More
ODYU01011287    SOQ56926.1    AGBW02012181    OWR45496.1    NWSH01001679    PCG70434.1    KQ461073    KPJ09727.1    KQ458575    KPJ05703.1    CH902618    KPU77828.1    CM000159    KRK01029.1    GAMC01016932    JAB89623.1    CH379067    EDY73270.2    KRK01033.1    CH916366    EDV95931.1    ATLV01018591    ATLV01018592    ATLV01018593    ATLV01018594    KE525239    KFB43225.1    BT023850    AAZ86771.1    CH940647    EDW68749.2    CH954178    EDV50714.2    CM002912    KMY98327.1    AE014296    ABI31245.2    ACL83263.1    CH933816    KRG07679.1    KMY98328.1    NEVH01003751    PNF40055.1    JRES01000681    KNC29207.1    PNF40057.1    AAAB01008807    EAA03949.4    JXUM01071810    JXUM01071811    JXUM01071812    JXUM01071813    KQ562684    KXJ75330.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000218220    UP000053240    UP000053268    + More
UP000007801    UP000002282    UP000001819    UP000001070    UP000030765    UP000076408    UP000008792    UP000008711    UP000000803    UP000009192    UP000095300    UP000095301    UP000235965    UP000037069    UP000007062    UP000075880    UP000069272    UP000075920    UP000075901    UP000075885    UP000075900    UP000069940    UP000249989   

PRIDE

H9IXE1    Q3ZAL9    Q0E8G9   

Pfam

PF07679   I-set        + More
PF00041   fn3

Interpro

IPR013783   Ig-like_fold        + More
IPR003961   FN3_dom       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR013098   Ig_I-set       
IPR036116   FN3_sf       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9IXE1   A0A3S2NIB4   A0A2H1WVD3   A0A212EVH8   A0A2A4JFT4   A0A194QW73   + More
A0A194QJF6   A0A0N8P0R1   A0A0R1DVF9   W8AXT7   B5DP20   A0A0R1DVD6   B4J206   A0A084VZ31   Q3ZAL9   A0A182YEH7   B4LCA4   B3NFV2   A0A0J9RRI2   Q0E8G9   A0A0Q9XGS9   A0A1I8Q679   A0A1I8MUY5   A0A0J9RR87   A0A2J7RGT6   A0A0L0CAC8   A0A2J7RGW1   Q7QIV4   A0A182IN23   A0A182FHC1   A0A182WLE9   A0A182SZP4   A0A182P483   A0A182WWV7   A0A182RF46   A0A182I2F4   A0A182GLD2  

KEGG

101743862    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0042802   GO:0005887   GO:0007155  

Length:

328

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

27.45148

Exp number, first 60 AAs:

27.45048

Total prob of N-in:

0.30949

POSSIBLE N-term signal

sequence

outside

1  -  32

TMhelix

33  -  55

inside

56  -  328

 

 

Pi

181.661428

Theta

206.055627

Tajima's D

-0.764764

CLR

0.322757

CSRT

0.181890905454727

Interpretation

Uncertain