Gene

KWMTBOMO11458

Pre Gene Modal

BGIBMGA001897

Annotation

PREDICTED:_CWF19-like_protein_1_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr19(+):6132904-6139351      View in EpiBrowser

Full name

CWF19-like protein 1      

Location in the cell

Nuclear   Reliability : 3.011

CDS

ATGGATAAACAGAAAACATTAATATGTGGAGATGTAAATGGGAATTTCAATGCTTTGTTTACGCGCGTAGAATCGATTGTGAAGAAATCTGGACAGTTTGATTTGCTTTTATGTGTTGGAACATTCTTTGGAGATGATAATTCACAACTGGATGCATATAAAATGGGAACGAGGAAAGTTCCAGTGACAACCTATGTTTTTGGTCCATCAAATCCAGACCATGTACATCATTACTGTGAAGAAGGATCTGAAATAGTACCTAATGTTATTTATATGGGCCGAAGAGGTCTTTTCAACACAAGTACCGATGTGAAAATCGCATACTTGACAGGTTTATCAAGGCGAGAGCTTGGTAAAGACGTTCCTATGTGTACTTATGAGCCCAGTGACTGTAGTGCTGTCAGAGATGCATGTTTCAGAGGACAGAGTGAATTTAGAGGAGTAGATGTATTGATAACAACATTATGGCCATCGGGTATACAACAGGATGAATGTCAGACGGTAGATGTTGAGCAAGATCGACTTTCAGATTTACTATCATGGCTTGCAATACATATAAAACCAAGATATCATTTTGTGCCATCAAAAGACAAGTTCTTTGAACGGCAACCATATAGAAATCAGAGTATGCATCAAGACTATAGAGAATGTGCAACACGTTTTATTGCACTAGCTCCTGTCGGCAATAATCTTAAAGAGAAATGGATATATGCCTGTTCTTTGCAACCCATTTCTAAGATGCGCATGACTGACTTACTCCAAGCTACGACAGATGAAACACCTTGTCCATATGACCCGGAGATGTTGAAGCAACACCAACCAGGGAAAGTTGTAAAGTTCACTGGAAATGGGCAGTTCTTCTTTGATATGAATGCACCCGATGACGACCAAGGAAAAAGGAAACGAGGAACTGACAAACCGGAAAGTAAAAAGAGAAATATCGAACCAGAAGAATGCTGGTTTTGTCTGTCTTCACCAAAGGTGGAGTCGCATCTTGTTATTTGTGTTGGCACCTTGTGCTACTTGGCGCTAGCAAAGGGTCCACTAACGCCATACCATGTATTGATACTACCGATACAACATCATCAGTCAACCACAAGGGCTCCGGATGATGTAATAAAAGAGATAACTAAGTTCAAAGACACTTTAAAGAAGTTTTATGCGACAATGAACATGGGTGTTGTTTTCTTTGAGAGAAATTATAGGACTTCGCACATGCAGATACAATGCGTGCCTGTGCCGAGGGCCTCTGAGTTACAGATCTTAGAAGTTTTTCAGGATGAAGCGGGCATCGCGAGCATACAAATGGAAGTATTGCCTCCTTATTCGGAAATCAGACAGGTGACATTACCGGGAGCCCCTTATTTTCATGCGGAATTGCCCTCTGGAGAACAAATTTATGCTAAAACCAAACAACATTTCCCATTGCAATTTGGAAGAGATGTGCTATCAAGTCCGCCGATATTAAACTGTGAAGATAAAGCGGACTGGCGGCAGTGTCAACTCACAAAAGAAGAAGAAGAGAAACACGTGGCCAACTTCAGAGCGAAGTTCAAGCCTTTTGATTTCACTGTCGAAGATGATAGCGATAGCGATTAA

Protein

MDKQKTLICGDVNGNFNALFTRVESIVKKSGQFDLLLCVGTFFGDDNSQLDAYKMGTRKVPVTTYVFGPSNPDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRRELGKDVPMCTYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQTVDVEQDRLSDLLSWLAIHIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALAPVGNNLKEKWIYACSLQPISKMRMTDLLQATTDETPCPYDPEMLKQHQPGKVVKFTGNGQFFFDMNAPDDDQGKRKRGTDKPESKKRNIEPEECWFCLSSPKVESHLVICVGTLCYLALAKGPLTPYHVLILPIQHHQSTTRAPDDVIKEITKFKDTLKKFYATMNMGVVFFERNYRTSHMQIQCVPVPRASELQILEVFQDEAGIASIQMEVLPPYSEIRQVTLPGAPYFHAELPSGEQIYAKTKQHFPLQFGRDVLSSPPILNCEDKADWRQCQLTKEEEEKHVANFRAKFKPFDFTVEDDSDSD

Similarity

Belongs to the CWF19 family.

Keywords

Alternative splicing   Complete proteome   Reference proteome   Neurodegeneration   Polymorphism  

Feature

chain  CWF19-like protein 1
splice variant  In isoform 2.
sequence variant  In dbSNP:rs2270962.

Uniprot

H9IXB4   A0A2A4JEC5   A0A0N1IPT9   A0A194QQ99   A0A212EVH1   A0A1E1W7W7   + More
A0A2H1WV96   A0A3S2NZ72   A0A1Y1KQK9   A0A067QWI3   A0A1B6J3M2   A0A151IM85   E2ARR2   A0A1B6GFZ6   A0A151WWZ2   A0A1W4X4B3   A0A0L7R7V7   A0A154NYS4   A0A151HYV8   A0A088AJ64   A0A195E5N5   A0A0J7L8P4   E2C5T0   A0A232F3B7   A0A210QGV3   F4X7R7   A0A158NR40   A0A2A3EJ54   A0A3L8DXG4   A0A0C9RHR7   N6TRZ2   A0A1B6E6F5   A0A1S3IEX5   A0A026W2F2   A0A061IHC6   A0A2U3V4X9   A0A139WF76   W5JV01   A0A182Q174   A0A2Y9N695   A0A341ANM4   D3Z863   A0A182WLG0   A0A2Y9J531   E0VZR3   A0A384AJA1   A0A341AJI4   A0A084VZ48   A0A340YBE6   A0A2Y9F990   A0A182FDG1   E1BG07   L5JPZ5   A0A0P4W7H9   A0A182NK82   A0A182RF56   E2RJE9   A0A3Q7RZW9   A0A1Z5LBM1   M3WDJ5   A0A2Y9FB16   A0A2Y9I045   A0A2Y9HUT2   G1PUS7   L8IQZ3   F1S8V2   K1R831   A0A3Q7PS78   A0A2U3YC79   Q8CI33   A0A1S3A6T2   G3TE85   F6X7E1   K7B247   A0A2U3W209   H2Q2F1   A0A2K5RG27   A0A2R9ASJ2   A0A2I3SDJ1   A0A3Q0DBG8   A0A2I3SXM1   A0A2R9AKD6   Q5R8R4   I3M6N5   A0A2R9ASJ8   H2NBA6   A0A2K5RG21   A0A2K5RG33   A0A2K5RFU0   A0A1S3FBJ0   A0A091D7Z0   A0A2K6TQ96   A0A0S2Z5E9   Q69YN2   A0A182JQG8   M3YZW2   G2HGT0   A0A2K6TQ73   A0A250Y2H6   A0A2K5CP30  

Pubmed

19121390    26354079    22118469    28004739    24845553    20798317    + More
28648823    28812685    21719571    21347285    30249741    23537049    24508170    23929341    18362917    19820115    20920257    23761445    15057822    15632090    20566863    24438588    19393038    23258410    16341006    28528879    17975172    21993624    22751099    22992520    16141072    19468303    15489334    21183079    19892987    16136131    22722832    28071753    26871637    14702039    17974005    15164054    21269460    25361784    21484476    28087693   

EMBL

BABH01018023    NWSH01001679    PCG70435.1    KQ460044    KPJ18344.1    KQ458575    + More
KPJ05701.1    AGBW02012181    OWR45495.1    GDQN01007991    JAT83063.1    ODYU01011287    SOQ56927.1    RSAL01000086    RVE48305.1    GEZM01076848    JAV63594.1    KK853284    KDR08989.1    GECU01013948    JAS93758.1    KQ977085    KYN05876.1    GL442166    EFN63870.1    GECZ01008443    JAS61326.1    KQ982685    KYQ52336.1    KQ414637    KOC66929.1    KQ434777    KZC04168.1    KQ976717    KYM76781.1    KQ979608    KYN20505.1    LBMM01000255    KMR02775.1    GL452801    EFN76714.1    NNAY01001140    OXU25009.1    NEDP02003747    OWF47947.1    GL888887    EGI57503.1    ADTU01023797    KZ288244    PBC31219.1    QOIP01000003    RLU25127.1    GBYB01007805    JAG77572.1    APGK01054116    KB741247    ENN72025.1    GEDC01003775    JAS33523.1    KK107499    EZA49776.1    KE671247    ERE80425.1    KQ971352    KYB26604.1    ADMH02000287    ETN67113.1    AXCN02000425    AC096352    CH473986    EDL94273.1    DS235854    EEB18869.1    ATLV01018601    KE525239    KFB43242.1    KB031155    ELK00836.1    GDRN01067009    JAI64441.1    AAEX03015467    GFJQ02002174    JAW04796.1    AANG04000273    AAPE02043644    AAPE02043645    JH880771    ELR59005.1    AEMK02000096    JH817849    EKC30101.1    AK088543    AK139654    AC125101    BC027553    BC037640    GABF01007882    GABF01007881    GABF01007880    GABF01007879    GABF01007878    GABF01007877    GABD01000177    GABD01000172    GABE01005790    GABE01005789    JAA14268.1    JAA32923.1    JAA38949.1    AACZ04051116    GABC01006915    NBAG03000216    JAA04423.1    PNI82044.1    AJFE02089653    AJFE02089654    AJFE02089655    AJFE02089656    AJFE02089657    AJFE02089658    CR859687    AGTP01082059    ABGA01250694    ABGA01250695    ABGA01250696    NDHI03003286    PNJ86944.1    KN123008    KFO27177.1    KU178692    ALQ34150.1    AK001860    AK023984    AL832515    AK295303    AL138921    CH471066    BC008746    AEYP01026126    AEYP01026127    AEYP01026128    AK305944    BAK62938.1    GFFV01002113    JAV37832.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000283053    + More
UP000027135    UP000078542    UP000000311    UP000075809    UP000192223    UP000053825    UP000076502    UP000078540    UP000005203    UP000078492    UP000036403    UP000008237    UP000215335    UP000242188    UP000007755    UP000005205    UP000242457    UP000279307    UP000019118    UP000085678    UP000053097    UP000030759    UP000245320    UP000007266    UP000000673    UP000075886    UP000248483    UP000252040    UP000002494    UP000075920    UP000248482    UP000009046    UP000261681    UP000030765    UP000265300    UP000248484    UP000069272    UP000009136    UP000010552    UP000075884    UP000075900    UP000002254    UP000286640    UP000011712    UP000248481    UP000001074    UP000008227    UP000005408    UP000286641    UP000245341    UP000000589    UP000079721    UP000007646    UP000002281    UP000245340    UP000002277    UP000233040    UP000240080    UP000189706    UP000001595    UP000005215    UP000081671    UP000028990    UP000233220    UP000005640    UP000075881    UP000000715    UP000233020   

PRIDE

H9IXB4    D3Z863    F1S8V2    Q8CI33    Q5R8R4    A0A0S2Z5E9    + More
Q69YN2   

Pfam

PF04676   CwfJ_C_2        + More
PF04677   CwfJ_C_1

Interpro

IPR006768   Cwf19-like_C_dom-1        + More
IPR006767   Cwf19-like_C_dom-2       
IPR036265   HIT-like_sf       
IPR040194   Cwf19-like       

SUPFAM

SSF54197   SSF54197       

Gene 3D

3.30.428.10    

ProteinModelPortal

H9IXB4   A0A2A4JEC5   A0A0N1IPT9   A0A194QQ99   A0A212EVH1   A0A1E1W7W7   + More
A0A2H1WV96   A0A3S2NZ72   A0A1Y1KQK9   A0A067QWI3   A0A1B6J3M2   A0A151IM85   E2ARR2   A0A1B6GFZ6   A0A151WWZ2   A0A1W4X4B3   A0A0L7R7V7   A0A154NYS4   A0A151HYV8   A0A088AJ64   A0A195E5N5   A0A0J7L8P4   E2C5T0   A0A232F3B7   A0A210QGV3   F4X7R7   A0A158NR40   A0A2A3EJ54   A0A3L8DXG4   A0A0C9RHR7   N6TRZ2   A0A1B6E6F5   A0A1S3IEX5   A0A026W2F2   A0A061IHC6   A0A2U3V4X9   A0A139WF76   W5JV01   A0A182Q174   A0A2Y9N695   A0A341ANM4   D3Z863   A0A182WLG0   A0A2Y9J531   E0VZR3   A0A384AJA1   A0A341AJI4   A0A084VZ48   A0A340YBE6   A0A2Y9F990   A0A182FDG1   E1BG07   L5JPZ5   A0A0P4W7H9   A0A182NK82   A0A182RF56   E2RJE9   A0A3Q7RZW9   A0A1Z5LBM1   M3WDJ5   A0A2Y9FB16   A0A2Y9I045   A0A2Y9HUT2   G1PUS7   L8IQZ3   F1S8V2   K1R831   A0A3Q7PS78   A0A2U3YC79   Q8CI33   A0A1S3A6T2   G3TE85   F6X7E1   K7B247   A0A2U3W209   H2Q2F1   A0A2K5RG27   A0A2R9ASJ2   A0A2I3SDJ1   A0A3Q0DBG8   A0A2I3SXM1   A0A2R9AKD6   Q5R8R4   I3M6N5   A0A2R9ASJ8   H2NBA6   A0A2K5RG21   A0A2K5RG33   A0A2K5RFU0   A0A1S3FBJ0   A0A091D7Z0   A0A2K6TQ96   A0A0S2Z5E9   Q69YN2   A0A182JQG8   M3YZW2   G2HGT0   A0A2K6TQ73   A0A250Y2H6   A0A2K5CP30  

PDB

6ID1     E-value=4.84985e-17,     Score=216

KEGG

101744770    no KO assigned | (RefSeq) CWF19-like protein 1

GO

GO:0061632   GO:0000398   GO:0071014   GO:0003824   GO:0045892   GO:0005488   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418  

PANTHER

PTHR12072  

Length:

532

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04001

Exp number, first 60 AAs:

0.0041

Total prob of N-in:

0.00481

outside

1  -  532

 

 

Pi

223.482889

Theta

184.250516

Tajima's D

0.86664

CLR

0.055047

CSRT

0.620868956552172

Interpretation

Uncertain