Gene

KWMTBOMO11457  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001925

Annotation

PREDICTED:_negative_elongation_factor_B_[Amyelois_transitella]

Location

Bomo_Chr19(-):6130141-6132093      View in EpiBrowser

Full name

Negative elongation factor B      

Location in the cell

Cytoplasmic   Reliability : 1.568 Nuclear   Reliability : 2.063

CDS

ATGGCGTCGTCAAGTAAACTACCAGGCACTGGTCTAGAAGAAGTGGGAGTACCAGGACAAACTTTCTTGCGAGATGCTCTGACAAGCTGTACCGACCCATTGAAAGCTATTGAAGAGTTTCAACTTGAAAACGGTATTTTATTGCCTTCTTTAAGGCCGATGCTGCCTTTACTAGACCTCCATGGCGTTCGGCGGCTTGACTTTCATACATCAGTTCTGGAGGAATTACGTGAAAAACTCATTGCCCACATCAACGAGCTTGGCAATAAAGATAACAAGGATAATGACAAAAAACTCAAAGAACTGCTATCTAAAAGCTTCCCAGTCGTCAGAGTTAAAGCTTTAAGACCTGTTATAATGGGTATTCTTAAAAATATCCCACATATAGATGATAAGTATCTAAGGGTACTAGTTCGCGACAGAGAACTGTACAATGACACAGATACTGAGGTGAAGCGTCAAATATGGCAAGACAACCAGTCACTGTTTGGAGATGAAGTTTCTCCACTCCTCAGTCAGTACATCAGGGAGAAAGAAGATGTTCTGTTTGATCATGAAAATCTTACAAATCTATTTTTTTCCCCTTCCCCAAAAGTAAGGAGACAAGGTGCAGTTGTTCAGAAACTTGCCCACATGATAGGTACTAGTGTTAAGTTATATGACATGGTGTTACAATTCCTGAGAACATTATTCTTAAGAACTAGAAATGTTCATTATTGTACATTAAGAGCAGAGCTTCTCATGGCCTTGCATGACCTAGAAGTTCAAGACATCATATCTGTAGACCCTTGTCATAAATTCACATGGTGTTTGGATGCTTGTATCAGGGAAAGGAATGTAGACATTAAAAGATCTAGGGAACTGCAAGGTTTTTTAGACAGTATTAAAAAGGGACAGGAGCAAGTTCTAGGAGATCTTTCTATGACGTTATGCGACCCTTATGCTATCAATTTCTTAGCAACGTCAGCTATCAAAATTTTACAACATTTAATAAACACTGAAGGGCTACCTCGAGATAGTACAGTTTTAATACTACTGCTAAGAATGTTGGCATTAGGGTTGAGCGCTTGGGTAATGATCGATTCTCAAGAATTCAAAGAGCCAAAATTAGATAGTCAATGTGTCACAAAATACTTGCCTGCCTTGATGTCATTGATGGTGGATGATCAAGTGAGAGCACTACATAATAAGTTACCTCCAGATGAAAGAGAGTCTGCCATCACTACGATAGAGCACTCGGGACCTCCACCTGATGCTTGTGAAGCCTATATGAGAGAAAGCTCAGTTTGTGGTGTTATTGCAATGTACTACACACTGCATGCAGCCAAATTACGTGACCGTGGTGCCTTACTTCGCATTCTTAGTATTCTCGGTAGTTGTAAAGATGGTAGAGCATATGAAGACCCATTTTTGCATGCTTTAGTGGCACTTCTAGTACAGTTACCTGATGAGTTCCAAGGAGAAGATTTTAGTACTGTATTATTTGATGAATTCTTCTTTGCTGGACTATCTAAGGATAATGTGACAAGACACTTATTGAAATTGCTGTGGTATATTCATCCAAAATTACCAGAGACTAGAATTCAAACTCTTATGAAAGCGCTGCAGCCTGGAACTCAGCATAATGAATCTGTACATAAATTATATGAGACTTTACAACAGAAATTAAATGCGCAAACAGAACCCGGTCCGAGTGCAACTGAAATGGAATATCTGGACTCCCCGTTAATGAGTGTACGCACGCCAGCACCATATCATATGTAG

Protein

MASSSKLPGTGLEEVGVPGQTFLRDALTSCTDPLKAIEEFQLENGILLPSLRPMLPLLDLHGVRRLDFHTSVLEELREKLIAHINELGNKDNKDNDKKLKELLSKSFPVVRVKALRPVIMGILKNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDHENLTNLFFSPSPKVRRQGAVVQKLAHMIGTSVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMALHDLEVQDIISVDPCHKFTWCLDACIRERNVDIKRSRELQGFLDSIKKGQEQVLGDLSMTLCDPYAINFLATSAIKILQHLINTEGLPRDSTVLILLLRMLALGLSAWVMIDSQEFKEPKLDSQCVTKYLPALMSLMVDDQVRALHNKLPPDERESAITTIEHSGPPPDACEAYMRESSVCGVIAMYYTLHAAKLRDRGALLRILSILGSCKDGRAYEDPFLHALVALLVQLPDEFQGEDFSTVLFDEFFFAGLSKDNVTRHLLKLLWYIHPKLPETRIQTLMKALQPGTQHNESVHKLYETLQQKLNAQTEPGPSATEMEYLDSPLMSVRTPAPYHM

Description

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II.

Subunit

Component of the NELF complex.

Similarity

Belongs to the NELF-B family.

Keywords

Chromosome   Complete proteome   Nucleus   Reference proteome   Repressor   Transcription   Transcription regulation  

Feature

chain  Negative elongation factor B

Uniprot

H9IXE2   A0A1E1VYM9   A0A2H1WV41   A0A3S2TK35   A0A0N1I9S6   A0A194QL86   + More
A0A2A4JF82   A0A0L7LM83   A0A212EVL7   A0A2J7QBY4   A0A1B6FDW2   A0A1B6K9V4   A0A084WIY8   Q16FI1   A0A182FHS7   A0A182J8F9   A0A2M4AQ31   W5JHD2   A0A182HA61   A0A0L0CBE1   A0A1A9W8Q7   B0WYZ6   A0A1I8PV65   A0A1B0G8R0   A0A1A9YMF2   A0A1A9VUJ3   A0A1B0BDI3   A0A1A9ZKS6   A0A0K8V202   U5EZ47   W8BR95   A0A1Q3F0Q0   W8C5D3   A0A0A1XSB8   A0A1B6CU00   A0A1I8MMI9   A0A182WD38   A0A182MX31   A0A182RAH7   A0A182YC87   A0A182X062   A0A182VNH1   A0A182U415   A0A182HPL7   T1I408   A0A182JZV3   A0A182N3R8   A0A182QCN7   B3MQU7   A0A182P1G0   A0A023F5I6   B3NTS3   A0A1W4VJZ1   A0A2R7W6R2   B4IHN7   Q9Y113   B4M0Z8   A0A0M4EQT9   B4L6C2   D6WGY9   A0A3B0JH84   A0A1Y1LLN3   B4GVU4   B4K7Y5   Q29G99   B4JH82   B4JK27   A0A336MNB2   B4Q0T3   E0VDW0   A0A0A9VSJ5   B4MAE6   Q7PZV6   N6TV53   T1PHX6   J9K791   A0A1B6E7S6   A0A154P946   A0A182KT81   A0A2S2NQ87   A0A2S2PYE5   A0A2A3EJI1   A0A2H8U0C8   A0A151IPN4   A0A0L7QZA4   A0A158P0Z4   A0A3B0JG17   A0A151JUN1   A0A151J1W8   A0A0M8ZWJ0   A0A026VZW5   A0A0C9RD87   A0A151WWE5   E2B7R1   A0A1B0CN97   A0A232FKF4   A0A3R7P5L7   T1J7M6   A0A0P4WLL0   A0A034WLH7  

Pubmed

19121390    26354079    26227816    22118469    24438588    17510324    + More
20920257    23761445    26483478    26108605    24495485    25830018    25315136    25244985    17994087    25474469    10731132    12537572    10731138    15741180    18362917    19820115    28004739    15632085    17550304    20566863    25401762    26823975    12364791    23537049    20966253    21347285    24508170    30249741    20798317    28648823    25348373   

EMBL

BABH01018023    GDQN01011273    GDQN01002605    JAT79781.1    JAT88449.1    ODYU01011287    + More
SOQ56928.1    RSAL01000086    RVE48306.1    KQ460044    KPJ18343.1    KQ458575    KPJ05700.1    NWSH01001679    PCG70436.1    JTDY01000594    KOB76540.1    AGBW02012181    OWR45494.1    NEVH01016293    PNF26104.1    GECZ01021394    JAS48375.1    GEBQ01031754    GEBQ01024883    JAT08223.1    JAT15094.1    ATLV01023954    KE525347    KFB50182.1    CH478433    EAT32993.1    AXCP01008560    GGFK01009584    MBW42905.1    ADMH02001519    ETN62219.1    JXUM01030925    KQ560902    KXJ80419.1    JRES01000749    KNC28784.1    DS232201    EDS37242.1    CCAG010000302    JXJN01012502    GDHF01019365    JAI32949.1    GANO01001444    JAB58427.1    GAMC01004943    GAMC01004941    JAC01613.1    GFDL01013910    JAV21135.1    GAMC01004939    JAC01617.1    GBXI01000859    JAD13433.1    GEDC01020421    GEDC01011182    JAS16877.1    JAS26116.1    AXCM01006031    APCN01003265    ACPB03022248    AXCN02001100    CH902622    EDV34152.1    GBBI01002278    JAC16434.1    CH954180    EDV47486.2    KK854393    PTY15417.1    CH480839    EDW49388.1    AE014298    AF145659    CH940650    EDW67409.1    CP012526    ALC47426.1    CH933812    EDW05918.2    KQ971321    EFA00606.1    OUUW01000004    SPP79642.1    GEZM01054347    JAV73748.1    CH479193    EDW26789.1    CH933806    EDW14319.1    CH379064    EAL32211.1    CH916369    EDV92773.1    CH916370    EDV99929.1    UFQT01001619    SSX31195.1    CM000162    EDX02354.2    DS235088    EEB11566.1    GBHO01044905    GBRD01014005    GDHC01003101    JAF98698.1    JAG51821.1    JAQ15528.1    CH940655    EDW66205.2    AAAB01008986    EAA00225.3    APGK01050866    KB741178    KB632256    ENN73145.1    ERL90688.1    KA648417    AFP63046.1    ABLF02031258    GEDC01003394    GEDC01001024    JAS33904.1    JAS36274.1    KQ434846    KZC08435.1    GGMR01006722    MBY19341.1    GGMS01000739    MBY69942.1    KZ288223    PBC31963.1    GFXV01007043    MBW18848.1    KQ976878    KYN07665.1    KQ414683    KOC63886.1    ADTU01005921    SPP79643.1    KQ981732    KYN36564.1    KQ980514    KYN15727.1    KQ435835    KOX71506.1    KK107522    QOIP01000001    EZA49307.1    RLU27223.1    GBYB01014554    JAG84321.1    KQ982691    KYQ52158.1    GL446201    EFN88274.1    AJWK01019908    AJWK01019909    AJWK01019910    NNAY01000075    OXU31236.1    QCYY01003969    ROT61857.1    JH431936    GDRN01036792    JAI67327.1    GAKP01002526    JAC56426.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000218220    UP000037510    + More
UP000007151    UP000235965    UP000030765    UP000008820    UP000069272    UP000075880    UP000000673    UP000069940    UP000249989    UP000037069    UP000091820    UP000002320    UP000095300    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000095301    UP000075920    UP000075883    UP000075900    UP000076408    UP000076407    UP000075903    UP000075902    UP000075840    UP000015103    UP000075881    UP000075884    UP000075886    UP000007801    UP000075885    UP000008711    UP000192221    UP000001292    UP000000803    UP000008792    UP000092553    UP000009192    UP000007266    UP000268350    UP000008744    UP000001819    UP000001070    UP000002282    UP000009046    UP000007062    UP000019118    UP000030742    UP000007819    UP000076502    UP000075882    UP000242457    UP000078542    UP000053825    UP000005205    UP000078541    UP000078492    UP000053105    UP000053097    UP000279307    UP000075809    UP000008237    UP000092461    UP000215335    UP000283509   

PRIDE

H9IXE2    Q9Y113   

Pfam

PF06209   COBRA1

Interpro

IPR016024   ARM-type_fold        + More
IPR010405   COBRA1       

SUPFAM

SSF48371   SSF48371       

ProteinModelPortal

H9IXE2   A0A1E1VYM9   A0A2H1WV41   A0A3S2TK35   A0A0N1I9S6   A0A194QL86   + More
A0A2A4JF82   A0A0L7LM83   A0A212EVL7   A0A2J7QBY4   A0A1B6FDW2   A0A1B6K9V4   A0A084WIY8   Q16FI1   A0A182FHS7   A0A182J8F9   A0A2M4AQ31   W5JHD2   A0A182HA61   A0A0L0CBE1   A0A1A9W8Q7   B0WYZ6   A0A1I8PV65   A0A1B0G8R0   A0A1A9YMF2   A0A1A9VUJ3   A0A1B0BDI3   A0A1A9ZKS6   A0A0K8V202   U5EZ47   W8BR95   A0A1Q3F0Q0   W8C5D3   A0A0A1XSB8   A0A1B6CU00   A0A1I8MMI9   A0A182WD38   A0A182MX31   A0A182RAH7   A0A182YC87   A0A182X062   A0A182VNH1   A0A182U415   A0A182HPL7   T1I408   A0A182JZV3   A0A182N3R8   A0A182QCN7   B3MQU7   A0A182P1G0   A0A023F5I6   B3NTS3   A0A1W4VJZ1   A0A2R7W6R2   B4IHN7   Q9Y113   B4M0Z8   A0A0M4EQT9   B4L6C2   D6WGY9   A0A3B0JH84   A0A1Y1LLN3   B4GVU4   B4K7Y5   Q29G99   B4JH82   B4JK27   A0A336MNB2   B4Q0T3   E0VDW0   A0A0A9VSJ5   B4MAE6   Q7PZV6   N6TV53   T1PHX6   J9K791   A0A1B6E7S6   A0A154P946   A0A182KT81   A0A2S2NQ87   A0A2S2PYE5   A0A2A3EJI1   A0A2H8U0C8   A0A151IPN4   A0A0L7QZA4   A0A158P0Z4   A0A3B0JG17   A0A151JUN1   A0A151J1W8   A0A0M8ZWJ0   A0A026VZW5   A0A0C9RD87   A0A151WWE5   E2B7R1   A0A1B0CN97   A0A232FKF4   A0A3R7P5L7   T1J7M6   A0A0P4WLL0   A0A034WLH7  

PDB

6GML     E-value=5.43232e-134,     Score=1225

KEGG

101744913    K15180 negative elongation factor B | (RefSeq) negative elongation factor B

GO

GO:0045892   GO:0005634   GO:0003746   GO:0034244   GO:0032021   GO:0045944   GO:0000122   GO:0003723   GO:0005694   GO:0017053   GO:0005488   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

PANTHER

PTHR13503  

Subcellular location

Nucleus  
Chromosome  

Length:

587

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35671

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00525

outside

1  -  587

 

 

Pi

203.750301

Theta

182.30075

Tajima's D

0.308355

CLR

0

CSRT

0.456927153642318

Interpretation

Uncertain