Gene

KWMTBOMO11452

Annotation

farnesyl_diphosphate_synthase_2_[Bombyx_mori]

Location

Bomo_Chr19(-):6063334-6064803      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.29

CDS

ATGACGACAGCCTCAAAAAATCTCGAAATAATTAATGAAAAGAAAATGTTCGACGATCTCCTCCCTGAAGTAATTATGACACTACAAAACAAATCCAAGTTATCTGAAGTGCCCCAAATAGGGGATTGGTTGAAAAAGATGCTTCATTACAATTTGGTTGGCGGTAAACATACAAGAGGAATAACTACTGTGATTTCATACAAAACAATTGAAAAACCGGAAAAAGTCACCGAACATACTTTGAAAATGGCTTGTAAACTGGGATGGTGTGTCGAAATGTTTCAGGCATATTGCATTGTGCTGGATGACATTATGGATGGTTCAAGCGTCCGACGCGGCATGCCCTGTTGGTATCGGCGTCCGGAAGACCAATCCTAA

Protein

MTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEDQS

Similarity

Belongs to the FPP/GGPP synthase family.

Uniprot

A5A7A5   A0A2A4JGC1   Q1XAB1   Q1X8X9   A0A0N1PIW0   A0A2H1WY54   + More
A0A194QQ94   A5A7A6   A0A2A4IUH1   A0A2A4JEQ9   H9IXE4   A0A212EVK2   A0A1W5ZM49   A0A0L7L6A6   A0A140AZ52   A0A2P8ZM10   A0A194QJJ2   A0A2S2NLA3   A0A1W5ZM48   A9Z1D3   Q1X876   H9IXE3   Q95P28   Q1X877   A5A7A4   Q1X875   Q1XAB0   Q1X8X8   A0A140AZ53   A0A0N1IG58   M1JS91   A0A2S2QJR0   G0YZR4   Q1X878   A0A140AZ54   J9JIS7   A0A2H1WV31   Q1XAA9   B1PI49   A0A212EVH6   G0YZR3   C7EY44   C7EY43   A0A2H8TTC7   A0A0H4IUW5   O76820   J9K2T3   Q1X879   A0A0U2D675   A0A2A4JG86   V5I8U9   T1ID56   A0A0L7L5Y7   A0A0P4VIE8   A0A161M3K4   A0A2H1WST5   A0A232EKP8   K7IWR9   A0A0R5Q896   C0LSI7   A0A069DS92   V8NHC9   A0A023F3V7   A0A0V0GE53   A0A2A4JF30   A7S5I7   U5ETY6   A0A140AZ56   A0A140AZ55   A0A140AZ57   A0A075D844   A0A1B6GXY7   A0A1L1VVV1   A0A1B6I6M4   A0A0W4ZUB3   L0PFC9   A0A1B6K499   A0A1B6E8U3   A0A0P5S2N4   A0A0P5XFR7   A0A2P2HZN1   A0A2J7PU57   A0A0K9Q373   A0A0F7ZE20   A0A2J7PU44   A0A1W7RHA7   A0A1B6IA47   S4PI76   A9Z1D4   A0A151X823   A0A1B6K964   A0A1B6M5C1   A0A1D2M7P0  

Pubmed

17628279    29183817    26354079    19121390    22118469    28382786    + More
26227816    29403074    18545274    18466770    23440195    20510361    26899871    10336620    27129103    28648823    20075255    21614522    26334808    24297900    25474469    17615350    26899007    23269827    26814964    26358130    23622113    27289101   

EMBL

AB274996    BAF62114.1    NWSH01001679    PCG70442.1    AY954919    AAY33485.1    + More
AY962307    AAY26574.1    KQ460044    KPJ18340.1    ODYU01011963    SOQ58005.1    KQ458575    KPJ05696.1    AB274997    BAF62115.1    NWSH01006480    PCG63405.1    PCG70441.1    BABH01018027    BABH01018028    BABH01018029    AGBW02012181    OWR45491.1    KY421779    ARI71315.1    JTDY01002731    KOB70829.1    KT959237    ALL35400.1    PYGN01000019    PSN57541.1    KPJ05697.1    GGMR01005351    MBY17970.1    KY421778    ARI71314.1    EU334430    ABY19312.1    AY968586    AAY33491.1    BABH01018026    AB072589    BAB69490.1    AY968585    AAY33490.3    AB274995    BAF62113.1    AY968587    AAY33492.1    AY954920    AAY33486.1    AH014859    AY962308    AAY26575.1    KT959238    ALL35401.1    KPJ18341.1    KC109782    AGE89831.1    GGMS01008720    MBY77923.1    HQ850373    AEK32004.1    AY968584    AAY33489.2    KT959239    ALL35402.1    ABLF02016577    ODYU01011280    SOQ56918.1    AY954921    AAY33487.1    EU429296    ACA48701.1    OWR45492.1    HQ850372    AEK32003.1    GQ324702    ACT79809.3    GQ324701    ACT79808.1    GFXV01004643    MBW16448.1    KP689343    AKO63325.1    AJ009962    CAA08918.2    ABLF02021368    AY968583    AAY33488.2    KM514312    AKM16734.1    PCG70440.1    GALX01004055    JAB64411.1    ACPB03002853    KOB70830.1    GDKW01002946    JAI53649.1    GEMB01005535    JAR97786.1    ODYU01010797    SOQ56123.1    NNAY01003758    OXU18892.1    AAZX01000604    KF841450    AIT55911.1    FJ755465    ACN63187.1    GBGD01001971    JAC86918.1    AZIM01004214    ETE61028.1    GBBI01003093    JAC15619.1    GECL01000525    JAP05599.1    NWSH01001773    PCG70184.1    DS469583    EDO40981.1    GANO01002569    JAB57302.1    KT959241    ALL35404.1    KT959240    ALL35403.1    KT959242    ALL35405.1    KC840040    AHH34857.1    GECZ01021848    GECZ01002488    JAS47921.1    JAS67281.1    KC758147    AHH31548.1    GECU01025120    JAS82586.1    LFWA01000003    KTW31959.1    CAKM01000272    CCJ30912.1    GECU01001438    JAT06269.1    GEDC01002947    JAS34351.1    GDIQ01110498    JAL41228.1    GDIP01085065    JAM18650.1    IACF01001514    LAB67209.1    NEVH01021208    PNF19863.1    LFYR01000145    KMZ75599.1    GBEX01001246    JAI13314.1    PNF19862.1    GDAY02000907    JAV50520.1    GECU01030621    GECU01023892    GECU01018894    GECU01006635    GECU01005965    GECU01004889    JAS77085.1    JAS83814.1    JAS88812.1    JAT01072.1    JAT01742.1    JAT02818.1    GAIX01005505    JAA87055.1    EU334431    EU447786    EU429295    ABY19313.1    ACA35007.1    ACA48700.1    KQ982431    KYQ56526.1    GEBQ01031996    JAT07981.1    GEBQ01008850    JAT31127.1    LJIJ01002994    ODM88997.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000005204    UP000007151    UP000037510    + More
UP000245037    UP000007819    UP000015103    UP000215335    UP000002358    UP000001593    UP000053447    UP000010422    UP000235965    UP000036987    UP000075809    UP000094527   

PRIDE

A5A7A5    A5A7A6    H9IXE4    H9IXE3    Q95P28    A5A7A4    + More

Pfam

PF00348   polyprenyl_synt

Interpro

IPR000092   Polyprenyl_synt        + More
IPR033749   Polyprenyl_synt_CS       
IPR039702   FPS1       
IPR008949   Isoprenoid_synthase_dom_sf       

SUPFAM

SSF48576   SSF48576       

Gene 3D

1.10.600.10    

ProteinModelPortal

A5A7A5   A0A2A4JGC1   Q1XAB1   Q1X8X9   A0A0N1PIW0   A0A2H1WY54   + More
A0A194QQ94   A5A7A6   A0A2A4IUH1   A0A2A4JEQ9   H9IXE4   A0A212EVK2   A0A1W5ZM49   A0A0L7L6A6   A0A140AZ52   A0A2P8ZM10   A0A194QJJ2   A0A2S2NLA3   A0A1W5ZM48   A9Z1D3   Q1X876   H9IXE3   Q95P28   Q1X877   A5A7A4   Q1X875   Q1XAB0   Q1X8X8   A0A140AZ53   A0A0N1IG58   M1JS91   A0A2S2QJR0   G0YZR4   Q1X878   A0A140AZ54   J9JIS7   A0A2H1WV31   Q1XAA9   B1PI49   A0A212EVH6   G0YZR3   C7EY44   C7EY43   A0A2H8TTC7   A0A0H4IUW5   O76820   J9K2T3   Q1X879   A0A0U2D675   A0A2A4JG86   V5I8U9   T1ID56   A0A0L7L5Y7   A0A0P4VIE8   A0A161M3K4   A0A2H1WST5   A0A232EKP8   K7IWR9   A0A0R5Q896   C0LSI7   A0A069DS92   V8NHC9   A0A023F3V7   A0A0V0GE53   A0A2A4JF30   A7S5I7   U5ETY6   A0A140AZ56   A0A140AZ55   A0A140AZ57   A0A075D844   A0A1B6GXY7   A0A1L1VVV1   A0A1B6I6M4   A0A0W4ZUB3   L0PFC9   A0A1B6K499   A0A1B6E8U3   A0A0P5S2N4   A0A0P5XFR7   A0A2P2HZN1   A0A2J7PU57   A0A0K9Q373   A0A0F7ZE20   A0A2J7PU44   A0A1W7RHA7   A0A1B6IA47   S4PI76   A9Z1D4   A0A151X823   A0A1B6K964   A0A1B6M5C1   A0A1D2M7P0  

PDB

6B07     E-value=8.64841e-36,     Score=370

KEGG

100101207    K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] | (RefSeq) Fpps2, Fpps2_bm; farnesyl diph

PATHWAY

00900    Terpenoid backbone biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0033384   GO:0045337   GO:0004161   GO:0004337   GO:0008299   GO:0005737   GO:0016021   GO:0005783   GO:0006696   GO:0004311   GO:0007264   GO:0008270   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

PANTHER

PTHR11525  

Length:

125

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03307

Exp number, first 60 AAs:

0.00029

Total prob of N-in:

0.30875

outside

1  -  125

 

 

Pi

222.933928

Theta

195.012557

Tajima's D

0.430557

CLR

0

CSRT

0.492675366231688

Interpretation

Uncertain