SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11451  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001927
Annotation
farnesyl_diphosphate_synthase_2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.716 Mitochondrial   Reliability : 1.197
 

Sequence

CDS
ATGGCCAGCGCCATACAAACTTTATGGCGCACTTCAATGGGTCAACATTTAGATCATGTAACAGGAAATCGAAAAACAGACTATTCTTCATTTACTCTGGATCGTTACTACACTATTATAAAATACAAGGCCGCATATTACACCTACAATTTACCCGTTTCCCTTGGTTTACTACTAGCTGAAAATGTGGATGAAAAAATTTATAAATCTGCTCAAGACATTTGCTTGGAAATAGGAACGATGTTCCAAATTCAGGACGATTTCATAGACTGCTTCGGTGATGAAATAAAAACTGGTAAAGTTGGTACAGATATACAAGAGCGCAAATGTACTTGGTTGGCAGTTCAAGCGCTGCAGCGCTGTACTGAAGCACAACGTACAGTATTCAAAGCCTGTTATGGTAGCAGTGAACCAGCACATGTGGAACGCATAAAACGACTTTACGAAGACCTTCACCTCCCGCAGATATACAAGCATCAAGAAAAAGCGATGTACGACAATATTATAAGACAAATTGAAAATATACCAATAGAGGCCGCCCGCGTTCTCTTTAAAAAGTTGTTGGATATTACGTACAATAGGCAACATTAA
Protein
MASAIQTLWRTSMGQHLDHVTGNRKTDYSSFTLDRYYTIIKYKAAYYTYNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVLFKKLLDITYNRQH

Summary

Similarity
Belongs to the FPP/GGPP synthase family.
EMBL
AB274996    BAF62114.1    BABH01018027    BABH01018028    BABH01018029    KQ460044    + More
KPJ18340.1    KQ458575    KPJ05696.1    AGBW02012181    OWR45491.1    AY962307    AAY26574.1    AY954919    AAY33485.1    ODYU01002886    SOQ40935.1    GAIX01009201    JAA83359.1    NWSH01006480    PCG63405.1    ODYU01011963    SOQ58005.1    NWSH01001679    PCG70441.1    JTDY01002731    KOB70829.1    AB274997    BAF62115.1    KY421779    ARI71315.1    JTDY01011123    KOB57504.1    NWSH01001773    PCG70184.1    PCG70442.1    PCG70183.1    KT748800    AMK48581.1    GECZ01026652    JAS43117.1    GEDC01002947    JAS34351.1    PYGN01000019    PSN57541.1    GBYB01003116    JAG72883.1    ODYU01011280    SOQ56918.1    AY954920    AAY33486.1    AH014859    AY962308    AAY26575.1    AXCM01017175    GAIX01005505    JAA87055.1    GL767700    EFZ13152.1    AJVK01015478    GANO01002569    JAB57302.1    AXCN02000425    APCN01000156    AAAB01008807    EAA04004.4    KPJ18341.1    CAIX01000007    CCI40283.1    CCI40281.1    NEVH01021208    PNF19862.1    CCI40282.1    KK852473    KDR23124.1    KPJ05697.1    KQ460772    KPJ12445.1    PCG70440.1    KY421778    ARI71314.1    GGFJ01005474    MBW54615.1    GGFM01001150    MBW21901.1    GGFK01001820    MBW35141.1    JXUM01026170    KQ560746    KXJ81031.1    GGFL01003136    MBW67314.1    GGFL01003135    MBW67313.1    GFDF01002193    JAV11891.1    GFDF01002194    JAV11890.1    GFDL01002296    JAV32749.1    AJ009962    CAA08918.2    ADMH02001942    ETN60396.1    CH477273    EAT45207.1    GAPW01001563    JAC12035.1    GL376603    AJWK01014316    AAZX01000604    AY954921    AAY33487.1    BDSP01000123    GAX17802.1    GEZM01054111    JAV73841.1    KU163588    LC176696    APG79413.1    BBA21113.1    AY966009    AAX78435.1    APGK01054108    APGK01054109    JQ855705    KB741247    KB632281    AFI45068.1    ENN72022.1    ERL91359.1    KQ414716    KOC62899.1    NNAY01003758    OXU18892.1    HACA01012535    CDW29896.1    GL433835    EFN59689.1    SOQ40934.1    CAIX01000307    CCI49531.1    BDSP01000142    GAX20074.1    KR140284    ALF44684.1    GDKW01002946    JAI53649.1    ACPB03002853    AB274995    BAF62113.1    AB072589    BAB69490.1    BABH01018026    KPJ12446.1    CDMY01000238    CEL95761.1    DS231813    EDS25700.1    LHPG02000002    PRW60267.1    LHPF02000003    PSC75133.1    GEHC01000234    JAV47411.1    OWR45492.1    ODYU01010797    SOQ56123.1   
Pfam
PF00348   polyprenyl_synt        + More
PF13344   Hydrolase_6
Interpro
IPR000092   Polyprenyl_synt        + More
IPR033749   Polyprenyl_synt_CS       
IPR039702   FPS1       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR036412   HAD-like_sf       
IPR023214   HAD_sf       
IPR006357   HAD-SF_hydro_IIA       
SUPFAM
SSF48576   SSF48576        + More
SSF56784   SSF56784       
Gene 3D
PDB
6B07     E-value=1.88407e-54,     Score=533

Ontologies

Topology

Length:
196
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.505279999999999
Exp number, first 60 AAs:
0.47302
Total prob of N-in:
0.19023
outside
1  -  196
 
 

Population Genetic Test Statistics

Pi
152.417917
Theta
139.312368
Tajima's D
0.258619
CLR
0.943263
CSRT
0.44252787360632
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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