Gene

KWMTBOMO11451  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001927

Annotation

farnesyl_diphosphate_synthase_2_[Bombyx_mori]

Location

Bomo_Chr19(-):6061124-6062473      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.716 Mitochondrial   Reliability : 1.197

CDS

ATGGCCAGCGCCATACAAACTTTATGGCGCACTTCAATGGGTCAACATTTAGATCATGTAACAGGAAATCGAAAAACAGACTATTCTTCATTTACTCTGGATCGTTACTACACTATTATAAAATACAAGGCCGCATATTACACCTACAATTTACCCGTTTCCCTTGGTTTACTACTAGCTGAAAATGTGGATGAAAAAATTTATAAATCTGCTCAAGACATTTGCTTGGAAATAGGAACGATGTTCCAAATTCAGGACGATTTCATAGACTGCTTCGGTGATGAAATAAAAACTGGTAAAGTTGGTACAGATATACAAGAGCGCAAATGTACTTGGTTGGCAGTTCAAGCGCTGCAGCGCTGTACTGAAGCACAACGTACAGTATTCAAAGCCTGTTATGGTAGCAGTGAACCAGCACATGTGGAACGCATAAAACGACTTTACGAAGACCTTCACCTCCCGCAGATATACAAGCATCAAGAAAAAGCGATGTACGACAATATTATAAGACAAATTGAAAATATACCAATAGAGGCCGCCCGCGTTCTCTTTAAAAAGTTGTTGGATATTACGTACAATAGGCAACATTAA

Protein

MASAIQTLWRTSMGQHLDHVTGNRKTDYSSFTLDRYYTIIKYKAAYYTYNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVLFKKLLDITYNRQH

Similarity

Belongs to the FPP/GGPP synthase family.

Uniprot

A5A7A5   H9IXE4   A0A0N1PIW0   A0A194QQ94   A0A212EVK2   Q1X8X9   + More
Q1XAB1   A0A2H1VJC4   S4P0U8   A0A2A4IUH1   A0A2H1WY54   A0A2A4JEQ9   A0A0L7L6A6   A5A7A6   A0A1W5ZM49   A0A0L7K4G9   A0A2A4JF30   A0A2A4JGC1   A0A2A4JFI5   A0A140DKW6   A0A1B6EYU0   A0A1B6E8U3   A0A2P8ZM10   A0A0C9R8J4   A0A182TY89   A0A2H1WV31   Q1XAB0   Q1X8X8   A0A182MIA4   S4PI76   E9J201   A0A1B0DI83   A0A182IT14   A0A182WWX1   A0A182NK80   A0A182RF58   U5ETY6   A0A182WLG4   A0A182QJE2   A0A182JX98   A0A182V441   A0A182I2G9   Q7QIW5   A0A182P468   A0A0N1IG58   A0A024G1U7   A0A182KQC2   A0A024G144   A0A182YEJ2   A0A2J7PU44   A0A024G0B1   A0A067RTI2   A0A194QJJ2   A0A0N1PFP8   A0A2A4JG86   A0A1W5ZM48   A0A2M4BNI6   A0A2M3Z093   A0A2M4A321   A0A182H5G9   A0A2M4CPQ8   A0A2M4CPT7   A0A1L8DZJ9   A0A1L8DZI7   A0A1Q3FYU3   O76820   W5J8W7   Q17F78   A0A023ES27   K3WEV8   A0A1B0CJ89   K7IWR9   Q1XAA9   A0A1Z5JVE3   A0A1Y1LLN4   A0A1L3KPV5   Q56CY7   I1VJ84   A0A0L7QWI9   A0A232EKP8   A0A0K2TWZ6   E1Z2N1   A0A2H1VL04   A0A024GRX7   A0A1Z5K194   A0A182FGW5   A0A0N9EI79   A0A0P4VIE8   T1ID56   A5A7A4   Q95P28   H9IXE3   A0A0N1IP44   A0A0G4EIF1   B0VZA8   A0A2P6U1R9   A0A2P6VM23   A0A1W7R8C9   A0A212EVH6   A0A2H1WST5  

Pubmed

17628279    19121390    26354079    22118469    29183817    23622113    + More
26227816    28382786    29403074    21282665    12364791    14747013    17210077    20966253    25244985    24845553    26483478    10336620    20920257    23761445    17510324    24945155    20075255    25634988    28004739    15983375    22516182    23537049    24167290    28648823    20852019    27129103    29178410   

EMBL

AB274996    BAF62114.1    BABH01018027    BABH01018028    BABH01018029    KQ460044    + More
KPJ18340.1    KQ458575    KPJ05696.1    AGBW02012181    OWR45491.1    AY962307    AAY26574.1    AY954919    AAY33485.1    ODYU01002886    SOQ40935.1    GAIX01009201    JAA83359.1    NWSH01006480    PCG63405.1    ODYU01011963    SOQ58005.1    NWSH01001679    PCG70441.1    JTDY01002731    KOB70829.1    AB274997    BAF62115.1    KY421779    ARI71315.1    JTDY01011123    KOB57504.1    NWSH01001773    PCG70184.1    PCG70442.1    PCG70183.1    KT748800    AMK48581.1    GECZ01026652    JAS43117.1    GEDC01002947    JAS34351.1    PYGN01000019    PSN57541.1    GBYB01003116    JAG72883.1    ODYU01011280    SOQ56918.1    AY954920    AAY33486.1    AH014859    AY962308    AAY26575.1    AXCM01017175    GAIX01005505    JAA87055.1    GL767700    EFZ13152.1    AJVK01015478    GANO01002569    JAB57302.1    AXCN02000425    APCN01000156    AAAB01008807    EAA04004.4    KPJ18341.1    CAIX01000007    CCI40283.1    CCI40281.1    NEVH01021208    PNF19862.1    CCI40282.1    KK852473    KDR23124.1    KPJ05697.1    KQ460772    KPJ12445.1    PCG70440.1    KY421778    ARI71314.1    GGFJ01005474    MBW54615.1    GGFM01001150    MBW21901.1    GGFK01001820    MBW35141.1    JXUM01026170    KQ560746    KXJ81031.1    GGFL01003136    MBW67314.1    GGFL01003135    MBW67313.1    GFDF01002193    JAV11891.1    GFDF01002194    JAV11890.1    GFDL01002296    JAV32749.1    AJ009962    CAA08918.2    ADMH02001942    ETN60396.1    CH477273    EAT45207.1    GAPW01001563    JAC12035.1    GL376603    AJWK01014316    AAZX01000604    AY954921    AAY33487.1    BDSP01000123    GAX17802.1    GEZM01054111    JAV73841.1    KU163588    LC176696    APG79413.1    BBA21113.1    AY966009    AAX78435.1    APGK01054108    APGK01054109    JQ855705    KB741247    KB632281    AFI45068.1    ENN72022.1    ERL91359.1    KQ414716    KOC62899.1    NNAY01003758    OXU18892.1    HACA01012535    CDW29896.1    GL433835    EFN59689.1    SOQ40934.1    CAIX01000307    CCI49531.1    BDSP01000142    GAX20074.1    KR140284    ALF44684.1    GDKW01002946    JAI53649.1    ACPB03002853    AB274995    BAF62113.1    AB072589    BAB69490.1    BABH01018026    KPJ12446.1    CDMY01000238    CEL95761.1    DS231813    EDS25700.1    LHPG02000002    PRW60267.1    LHPF02000003    PSC75133.1    GEHC01000234    JAV47411.1    OWR45492.1    ODYU01010797    SOQ56123.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    + More
UP000245037    UP000075902    UP000075883    UP000092462    UP000075880    UP000076407    UP000075884    UP000075900    UP000075920    UP000075886    UP000075881    UP000075903    UP000075840    UP000007062    UP000075885    UP000053237    UP000075882    UP000076408    UP000235965    UP000027135    UP000069940    UP000249989    UP000000673    UP000008820    UP000092461    UP000002358    UP000019118    UP000030742    UP000053825    UP000215335    UP000008141    UP000069272    UP000015103    UP000041254    UP000002320    UP000239899    UP000239649   

PRIDE

A5A7A5    H9IXE4    A5A7A6    A5A7A4    Q95P28    H9IXE3    + More

Pfam

PF00348   polyprenyl_synt        + More
PF13344   Hydrolase_6

Interpro

IPR000092   Polyprenyl_synt        + More
IPR033749   Polyprenyl_synt_CS       
IPR039702   FPS1       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR036412   HAD-like_sf       
IPR023214   HAD_sf       
IPR006357   HAD-SF_hydro_IIA       

SUPFAM

SSF48576   SSF48576        + More
SSF56784   SSF56784       

Gene 3D

1.10.600.10     3.40.50.1000    

ProteinModelPortal

A5A7A5   H9IXE4   A0A0N1PIW0   A0A194QQ94   A0A212EVK2   Q1X8X9   + More
Q1XAB1   A0A2H1VJC4   S4P0U8   A0A2A4IUH1   A0A2H1WY54   A0A2A4JEQ9   A0A0L7L6A6   A5A7A6   A0A1W5ZM49   A0A0L7K4G9   A0A2A4JF30   A0A2A4JGC1   A0A2A4JFI5   A0A140DKW6   A0A1B6EYU0   A0A1B6E8U3   A0A2P8ZM10   A0A0C9R8J4   A0A182TY89   A0A2H1WV31   Q1XAB0   Q1X8X8   A0A182MIA4   S4PI76   E9J201   A0A1B0DI83   A0A182IT14   A0A182WWX1   A0A182NK80   A0A182RF58   U5ETY6   A0A182WLG4   A0A182QJE2   A0A182JX98   A0A182V441   A0A182I2G9   Q7QIW5   A0A182P468   A0A0N1IG58   A0A024G1U7   A0A182KQC2   A0A024G144   A0A182YEJ2   A0A2J7PU44   A0A024G0B1   A0A067RTI2   A0A194QJJ2   A0A0N1PFP8   A0A2A4JG86   A0A1W5ZM48   A0A2M4BNI6   A0A2M3Z093   A0A2M4A321   A0A182H5G9   A0A2M4CPQ8   A0A2M4CPT7   A0A1L8DZJ9   A0A1L8DZI7   A0A1Q3FYU3   O76820   W5J8W7   Q17F78   A0A023ES27   K3WEV8   A0A1B0CJ89   K7IWR9   Q1XAA9   A0A1Z5JVE3   A0A1Y1LLN4   A0A1L3KPV5   Q56CY7   I1VJ84   A0A0L7QWI9   A0A232EKP8   A0A0K2TWZ6   E1Z2N1   A0A2H1VL04   A0A024GRX7   A0A1Z5K194   A0A182FGW5   A0A0N9EI79   A0A0P4VIE8   T1ID56   A5A7A4   Q95P28   H9IXE3   A0A0N1IP44   A0A0G4EIF1   B0VZA8   A0A2P6U1R9   A0A2P6VM23   A0A1W7R8C9   A0A212EVH6   A0A2H1WST5  

PDB

6B07     E-value=1.88407e-54,     Score=533

KEGG

100101207    K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] | (RefSeq) Fpps2, Fpps2_bm; farnesyl diph

GO

GO:0033384   GO:0045337   GO:0004161   GO:0004337   GO:0005737   GO:0016021   GO:0008299   GO:0007264   GO:0008270   GO:0004180   GO:0007016   GO:0016010   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

PANTHER

PTHR11525  

Length:

196

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.505279999999999

Exp number, first 60 AAs:

0.47302

Total prob of N-in:

0.19023

outside

1  -  196

 

 

Pi

152.417917

Theta

139.312368

Tajima's D

0.258619

CLR

0.943263

CSRT

0.44252787360632

Interpretation

Uncertain