Gene

KWMTBOMO11450  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001927

Annotation

PREDICTED:_farnesyl_diphosphate_synthase_3_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr19(-):6050393-6059703      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.034

CDS

ATGAACACCACATCGATATTTCTACGATTAATTAACAGAACAAGAAAAATATATCCAATAAACAGTATAAGTTTTCAATCAGCTGGATGCAGGTGTAGTTCAGCATATGCAGCTAGTGTTTCGCAAATAGCAAAAGAAAGGGAAACATTCCAAGATGCCTGGAAAGGTATTATCGACAATCTAACGACAAATAAGAAATTCACACAGCTACCAGAACTCGGAAGCTGGGTTAAAAAGGTCTTAGAATACAATGTCAAAGGTGGTAAGAAAATCAGGGGCATAACAACGGTGCTCGCTTATGAATTATTCGAGAAACCGGAAAACGTTACCGAAGAGATGGTGAGGTTAGCACGTGTCGCCGGTTGGTGTACGGAAATGCTGCAGGCGTACTTGATAATGAACGACGATATAATGGACGGGTCGTCGACCCGGCGCGGGGTCCCGTGCTGGTACCGCATGCCCGACGTGGGCCTCGGCGCCATCAACGACGCCATACTCGTCTACGGTTCTATATACGAAATACTCAAGATATATTTCGGGAAAGCTAAAGAATACGCAGACATCCTGGACATTTTCAACGAGGCTCTTCTCTATACGAGCATGGGACAACATTTAGATTACGCCATGGCGCACCGCAACAAACAAGACTACAGTCTGTTCACGACGGAGCGATATTATTCGATCGTTAAATACAAGACCTCGTATTACTCGATCAAGTTGCCGGTTGTTCTCGGCTTGATCCTTACCCAGAACAGAGAGAATGCGCCTATCGAAGACATTGAAGGAATATGTTTTGAAATCGGCAAGCTGTTTCAAATTCAGGACGACTTCATGGACTGCTTCGGCAACGAAACGGTTACAGGGAAAAAAGGGACCGACATCCAAGAAGGCAAGTGCTCTTGGCTGGCGGTTAATGCACTGCAACGGTGTAACGACGCGCAACGAACGCTGTTCGCACAGAACTACGCGAGCAAAGACCCGGACGACGTCGCGTCGATAAAGCGACTTTACGAAGACTTGCAGTTGCCAAAGCTATACAAAGAACAAGAGGACGAAATACACAGCGGCATCTTAAAGAAGATTAACGCGCTGCCCTCTAGTACGTCGCCTGCGATTTTCTTTAAACTCCTCGATATGATATTCAAGAGAAGTTATTAA

Protein

MNTTSIFLRLINRTRKIYPINSISFQSAGCRCSSAYAASVSQIAKERETFQDAWKGIIDNLTTNKKFTQLPELGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSYYSIKLPVVLGLILTQNRENAPIEDIEGICFEIGKLFQIQDDFMDCFGNETVTGKKGTDIQEGKCSWLAVNALQRCNDAQRTLFAQNYASKDPDDVASIKRLYEDLQLPKLYKEQEDEIHSGILKKINALPSSTSPAIFFKLLDMIFKRSY

Similarity

Belongs to the FPP/GGPP synthase family.

Uniprot

A5A7A6   H9IXE4   A0A194QQ94   A0A0N1PIW0   Q1X8X9   Q1XAB1   + More
A0A212EVK2   A0A2H1VJC4   A0A1W5ZM49   A0A2A4JGC1   A5A7A5   A0A2H1WY54   A0A2A4JEQ9   A0A2A4IUH1   Q1X8X8   Q1XAB0   A0A0N1IG58   A0A194QJJ2   A0A2A4JG86   S4PI76   A0A2H1WV31   O76820   A0A1W5ZM48   Q1XAA9   H9IXE3   Q95P28   A5A7A4   A0A0L7L6A6   A0A2P8ZM10   A0A212EVH6   A0A140AZ54   A0A0R5Q896   A0A1Y1LLN4   M1JS91   A0A2A4JF30   A0A140AZ53   A0A0P4VIE8   T1ID56   A0A1B6E8U3   K7IWR9   A0A232EKP8   C7EY44   A0A0V0GE53   A0A2J7PU44   J9JIS7   A0A069DS92   A0A2H8TTC7   A0A2S2QJR0   A0A140AZ52   U5ETY6   G0YZR3   Q1X878   C7EY43   Q1X879   A0A067RTI2   E0VQL3   Q56CY8   Q1X877   A0A0N9EI79   A0A1D2M7P0   B0VZA8   A9Z1D3   G0YZR4   Q1X876   A0A023F3V7   A0A1B6GXY7   Q1X875   B1PI49   I1VJ84   A0A1B6IA47   A0A1D2N3H7   J9K2T3   A0A2H1WST5   A0A1Q3FYU3   A0A1B6K964   A0A0L0C1A4   A0A1B6M5C1   A0A2P2HZN1   Q56CY7   A0A1L1VVV1   A0A075D844   A0A151X823   E9IQC1   B8XPY7   Q28Y31   B4GGH4   A0A3B0J0A8   Q17F78   E2B1K5   G3TQX7   A9Z1D4   A0A1D1VGA4   A0A140GWW2   E9G2F8   A0A2Z7D2Z9   A0A226EDG2   B4MFG4   A0A140GWW4   A0A2P2JL15   C0LSI7  

Pubmed

17628279    19121390    26354079    29183817    22118469    28382786    + More
23622113    10336620    26227816    29403074    28004739    23440195    27129103    20075255    28648823    20510361    26334808    18466770    24845553    20566863    15983375    27289101    18545274    25474469    22516182    23537049    24167290    26108605    21282665    20855217    15632085    17994087    17510324    20798317    27649274    21292972    25902549    21614522   

EMBL

AB274997    BAF62115.1    BABH01018027    BABH01018028    BABH01018029    KQ458575    + More
KPJ05696.1    KQ460044    KPJ18340.1    AY962307    AAY26574.1    AY954919    AAY33485.1    AGBW02012181    OWR45491.1    ODYU01002886    SOQ40935.1    KY421779    ARI71315.1    NWSH01001679    PCG70442.1    AB274996    BAF62114.1    ODYU01011963    SOQ58005.1    PCG70441.1    NWSH01006480    PCG63405.1    AH014859    AY962308    AAY26575.1    AY954920    AAY33486.1    KPJ18341.1    KPJ05697.1    PCG70440.1    GAIX01005505    JAA87055.1    ODYU01011280    SOQ56918.1    AJ009962    CAA08918.2    KY421778    ARI71314.1    AY954921    AAY33487.1    BABH01018026    AB072589    BAB69490.1    AB274995    BAF62113.1    JTDY01002731    KOB70829.1    PYGN01000019    PSN57541.1    OWR45492.1    KT959239    ALL35402.1    KF841450    AIT55911.1    GEZM01054111    JAV73841.1    KC109782    AGE89831.1    NWSH01001773    PCG70184.1    KT959238    ALL35401.1    GDKW01002946    JAI53649.1    ACPB03002853    GEDC01002947    JAS34351.1    AAZX01000604    NNAY01003758    OXU18892.1    GQ324702    ACT79809.3    GECL01000525    JAP05599.1    NEVH01021208    PNF19862.1    ABLF02016577    GBGD01001971    JAC86918.1    GFXV01004643    MBW16448.1    GGMS01008720    MBY77923.1    KT959237    ALL35400.1    GANO01002569    JAB57302.1    HQ850372    AEK32003.1    AY968584    AAY33489.2    GQ324701    ACT79808.1    AY968583    AAY33488.2    KK852473    KDR23124.1    DS235430    EEB15669.1    AY966008    AAX78434.1    AY968585    AAY33490.3    KR140284    ALF44684.1    LJIJ01002994    ODM88997.1    DS231813    EDS25700.1    EU334430    ABY19312.1    HQ850373    AEK32004.1    AY968586    AAY33491.1    GBBI01003093    JAC15619.1    GECZ01021848    GECZ01002488    JAS47921.1    JAS67281.1    AY968587    AAY33492.1    EU429296    ACA48701.1    APGK01054108    APGK01054109    JQ855705    KB741247    KB632281    AFI45068.1    ENN72022.1    ERL91359.1    GECU01030621    GECU01023892    GECU01018894    GECU01006635    GECU01005965    GECU01004889    JAS77085.1    JAS83814.1    JAS88812.1    JAT01072.1    JAT01742.1    JAT02818.1    LJIJ01000255    ODM99800.1    ABLF02021368    ODYU01010797    SOQ56123.1    GFDL01002296    JAV32749.1    GEBQ01031996    JAT07981.1    JRES01001012    KNC26123.1    GEBQ01008850    JAT31127.1    IACF01001514    LAB67209.1    AY966009    AAX78435.1    KC758147    AHH31548.1    KC840040    AHH34857.1    KQ982431    KYQ56526.1    GL764688    EFZ17248.1    FJ415102    ACJ38671.1    CM000071    EAL26135.1    CH479183    EDW35594.1    OUUW01000001    SPP73997.1    CH477273    EAT45207.1    GL444953    EFN60361.1    EU334431    EU447786    EU429295    ABY19313.1    ACA35007.1    ACA48700.1    BDGG01000004    GAU97933.1    KT306003    AMN82834.1    GL732530    EFX86316.1    KQ991907    KZV51249.1    LNIX01000004    OXA55278.1    CH940667    EDW57135.1    KT306005    AMN82836.1    GGEC01013700    MBW94183.1    FJ755465    ACN63187.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000218220    UP000037510    + More
UP000245037    UP000015103    UP000002358    UP000215335    UP000235965    UP000007819    UP000027135    UP000009046    UP000094527    UP000002320    UP000019118    UP000030742    UP000037069    UP000075809    UP000001819    UP000008744    UP000268350    UP000008820    UP000000311    UP000007646    UP000186922    UP000000305    UP000198287    UP000008792   

PRIDE

A5A7A6    H9IXE4    A5A7A5    H9IXE3    Q95P28    A5A7A4    + More

Pfam

PF00348   polyprenyl_synt

Interpro

IPR000092   Polyprenyl_synt        + More
IPR039702   FPS1       
IPR033749   Polyprenyl_synt_CS       
IPR008949   Isoprenoid_synthase_dom_sf       

SUPFAM

SSF48576   SSF48576       

Gene 3D

1.10.600.10    

ProteinModelPortal

A5A7A6   H9IXE4   A0A194QQ94   A0A0N1PIW0   Q1X8X9   Q1XAB1   + More
A0A212EVK2   A0A2H1VJC4   A0A1W5ZM49   A0A2A4JGC1   A5A7A5   A0A2H1WY54   A0A2A4JEQ9   A0A2A4IUH1   Q1X8X8   Q1XAB0   A0A0N1IG58   A0A194QJJ2   A0A2A4JG86   S4PI76   A0A2H1WV31   O76820   A0A1W5ZM48   Q1XAA9   H9IXE3   Q95P28   A5A7A4   A0A0L7L6A6   A0A2P8ZM10   A0A212EVH6   A0A140AZ54   A0A0R5Q896   A0A1Y1LLN4   M1JS91   A0A2A4JF30   A0A140AZ53   A0A0P4VIE8   T1ID56   A0A1B6E8U3   K7IWR9   A0A232EKP8   C7EY44   A0A0V0GE53   A0A2J7PU44   J9JIS7   A0A069DS92   A0A2H8TTC7   A0A2S2QJR0   A0A140AZ52   U5ETY6   G0YZR3   Q1X878   C7EY43   Q1X879   A0A067RTI2   E0VQL3   Q56CY8   Q1X877   A0A0N9EI79   A0A1D2M7P0   B0VZA8   A9Z1D3   G0YZR4   Q1X876   A0A023F3V7   A0A1B6GXY7   Q1X875   B1PI49   I1VJ84   A0A1B6IA47   A0A1D2N3H7   J9K2T3   A0A2H1WST5   A0A1Q3FYU3   A0A1B6K964   A0A0L0C1A4   A0A1B6M5C1   A0A2P2HZN1   Q56CY7   A0A1L1VVV1   A0A075D844   A0A151X823   E9IQC1   B8XPY7   Q28Y31   B4GGH4   A0A3B0J0A8   Q17F78   E2B1K5   G3TQX7   A9Z1D4   A0A1D1VGA4   A0A140GWW2   E9G2F8   A0A2Z7D2Z9   A0A226EDG2   B4MFG4   A0A140GWW4   A0A2P2JL15   C0LSI7  

PDB

6B07     E-value=7.65049e-117,     Score=1075

KEGG

100101208    K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] | (RefSeq) Fpps3, Fpps3_bm; farnesyl diph

PATHWAY

00900    Terpenoid backbone biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0004337   GO:0004161   GO:0045337   GO:0033384   GO:0008354   GO:0016740   GO:0008299   GO:0005737   GO:0007264   GO:0008270   GO:0004180   GO:0007016   GO:0016010   GO:0003707   GO:0006418   GO:0003824  

PANTHER

PTHR11525  

Length:

385

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14896

Exp number, first 60 AAs:

0.00777

Total prob of N-in:

0.01234

outside

1  -  385

 

 

Pi

183.471482

Theta

16.119489

Tajima's D

0.935271

CLR

0.07473

CSRT

0.649117544122794

Interpretation

Uncertain