SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11448  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001928
Annotation
PREDICTED:_GTP-binding_protein_RAB2_isoform_X1_[Bombyx_mori]
Full name
Ras-related protein Rab-2A      
Location in the cell
Cytoplasmic   Reliability : 1.907
 

Sequence

CDS
ATGGCATACGCCTATCTTTTTAAATACATCATCATCGGGGACACAGGTGTGGGTAAATCATGTTTACTCCTTCAATTCACGGACAAAAGATTCCAACCGGTGCATGATCTCACTATTGGTGTTGAATTTGGTGCTCGGATGATCACAATTGATGGCAAGCAGATCAAGTTGCAGATTTGGGACACAGCTGGTCAAGAAGCTTTTAGGTCCATCACCCGATCGTACTACCGGGGCGCGGCTGGCGCTCTGTTAGTTTACGACATCACCAGACGGGAGACTTTCAATCATCTCACAACGTGGCTCGAGGACGCGCGACAACATTCCAACTCGAATATGGTCATTATGCTTATCGGTAACAAGAGCGATCTCGAATCCCGACGTGAAGTGAAGAAGGAAGAAGGCGAAGCGTTCGCTCGCGAGCACGGCCTCGTCTTCATGGAGACGTCTGCCAAGACTGCCGCCAACGTCGAGGAGGCTTTCATCAACACCGCCAAAGAGATCTATGAGAAGATACAGGAAGGAGTGTTTGATATCAATAATGAGGCGAACGGCATCAAGATAGGTCCTCAGCACTCGACGGGCGCCGGGGCGGGCGGCGCGGGGGGCGCGGGCGCGGGCGGCGCGTCCTCCGGTGGCTGCTGTTAG
Protein
MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHSTGAGAGGAGGAGAGGASSGGCC

Summary

Description
Required for protein transport from the endoplasmic reticulum to the Golgi complex.
Similarity
Belongs to the small GTPase superfamily. Rab family.
Keywords
Complete proteome   Endoplasmic reticulum   ER-Golgi transport   Golgi apparatus   GTP-binding   Lipoprotein   Membrane   Nucleotide-binding   Prenylation   Protein transport   Reference proteome   Transport  
Feature
chain  Ras-related protein Rab-2A
EMBL
BABH01018030    GAIX01012144    JAA80416.1    KQ458575    KPJ05688.1    DQ517933    + More
ABF66620.1    GEDC01022973    JAS14325.1    KK853253    KDR09308.1    GFAH01000473    JAV47916.1    KQ971354    EFA07147.1    LJIG01009784    KRT82387.1    PYGN01001941    PSN32081.1    GEZM01042610    GEZM01042609    JAV79758.1    GECU01026832    JAS80874.1    FR904738    CDQ70862.1    ABJB010211187    DS736644    EEC07251.1    GADI01006575    GEFM01005421    JAA67233.1    JAP70375.1    GDIQ01017016    JAN77721.1    BT043649    BT045105    BT058710    BT059707    BT060429    ACH70764.1    ACI33367.1    ACN10423.1    ACN11420.1    NHOQ01001318    PWA25163.1    GBBK01003693    JAC20789.1    BK007650    DAA34556.1    GBBM01002542    JAC32876.1    GBBL01001907    JAC25413.1    AYCK01010596    HAEI01002036    HAEH01010850    SBR90761.1    HAED01012860    HAEE01001195    SBR21211.1    HAEF01008037    HAEG01008196    SBR45839.1    HADW01012790    HADX01004237    SBP14190.1    HADZ01005063    HAEA01013034    SBQ41514.1    HAEB01009329    HAEC01012815    SBQ81032.1    HADY01002158    HAEJ01017751    SBS58208.1    CP026249    AWP04647.1    LJIJ01000677    ODM95406.1    AERX01030339    AERX01030340    GG666464    EEN68387.1    GFPF01011226    MAA22372.1    GEDV01006698    JAP81859.1    GACK01005916    JAA59118.1    GEFH01001682    JAP66899.1    AGBW02012181    OWR45489.1    GEBQ01030071    JAT09906.1    CM004476    OCT76846.1    GBYX01164343    JAO89918.1    KK121519    KFM80634.1    GFAC01000295    JAT98893.1    GALX01000622    JAB67844.1    FR904547    CDQ66546.1    AFYH01132299    AFYH01132300    AFYH01132301    AFYH01132302    AFYH01132303    AFYH01132304    AFYH01132305    AFYH01132306    AFYH01132307    AFYH01132308    GCES01020392    JAR65931.1    CR450710    CR847864    BC044459    BC165141    AAH44459.1    AAI65141.1    MCFN01000055    OXB66727.1    AHAT01004396    AHAT01004397    AHAT01004398    MUZQ01000013    OWK63360.1    QRBI01000104    RMC15356.1    IACM01111659    LAB34375.1    AWGT02000185    OXB74220.1    AGTO01001021    IACK01207441    LAA96946.1    AZIM01000826    ETE69185.1    GDAY02001934    JAV49498.1    GAAZ01001970    JAA95973.1    ABQF01005229    ABQF01005230    ABQF01005231    IACI01034229    LAA22244.1    JU175575    GBEX01002705    AFJ51099.1    JAI11855.1    GBSH01002210    GBSH01002168    JAG66858.1    IACL01046298    IACL01046299    IACL01046300    LAB06361.1    GAEP01001259    GBEW01000778    JAB53562.1    JAI09587.1    AAPE02009572    AAPE02009573    X84220    AB232585    CH466538    BAF02847.1    EDL05680.1   
Pfam
PF00071   Ras
Interpro
IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
SUPFAM
SSF52540   SSF52540       
PDB
4RKE     E-value=9.58387e-93,     Score=864

Ontologies

Topology

Subcellular location
Endoplasmic reticulum-Golgi intermediate compartment membrane  
Endoplasmic reticulum membrane  
Golgi apparatus membrane  
Length:
214
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.39634
Exp number, first 60 AAs:
0.38178
Total prob of N-in:
0.08858
outside
1  -  214
 
 

Population Genetic Test Statistics

Pi
136.098377
Theta
152.435447
Tajima's D
-0.486693
CLR
0.277567
CSRT
0.246237688115594
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 GAAGALLVYDITR 100.00 0.004
26822097 EHGIVFMETSAK 100.00 0.018
26280517 SYNDETQKIVDQASEAR 100.00 0.018
27102218 TTHAAWETFR 100.00 0.018
28467696 TAAITVDNTQQTTPR 100.00 0.018
28556443 LQIWDTAGQEAFR 100.00 0.018
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