SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11434  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001887
Annotation
Mitotic_spindle_assembly_checkpoint_protein_MAD1_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.618
 

Sequence

CDS
ATGCATAATTATCCGTTACAGGAAGTGGCGACATTGAAATACGAACGCGACAAGGCCACAGGAAAGTTGAATGATCTCACAACGGTACGCAAAAACCAGGAGAGTCTCATACACAGACTGCAGAAGCGATTGCTATTAGTTACTAGGGAAAGGGATAGTTATAGGCAACAACTAGACTGCTATGAGAAAGAGTTAACGGTGACACTGTGCGGGGAGGAGGGCGCCGGTAGCGTCGCCTTGTTGTCGGCGCGCGTACAGCAACTAGAGAAGAGCCTTCAGGGATACAGAGACCTGATTGCCGCTCACGATCCTCATGCGCATTCCAAAGCTCTGGAGAGTCTCCGCAACGAAGTGACGCGATGGCGCGAGGAGGCGGAGGGCGCGCGGCGTGACGTCACCAAGCTGCGGACACAGCGCGACCTGCTCACTGCCAGCCTCGAGCGGATCGGTCCTCAGACGAAGGTGCTACACTTAACGAACAACCCCGCGGCCGAAGCACAAAAACAAATATCAAAAGAATTAGAAGCCGCCCAGGAAGAGATAAAGAAGTTGAAGGTTGCTCTACGCGAGGGAGGGGCTCAGGCGGACCCCGAGGAGTTGCAACAGATGCGACAGCAGTTGGAGAACAGTCGAATTAAGCTTAAGAGAATGAAAGAAGAGTTCACGTCTTCCGCTCAAGAATACAGAGACGTTTGTTACATGCTTTTAGGGTATAAAATTGATCGCACTGGGCATAAAAATTACAGGATATCGAATATGTACGCGGAGTCGTCCGAAGAATATTTAACGTTTACCCTGTGCGACGACGGCATCGAGATGGTCCACACCGACTACTCGGAGACTCTGGGCGATCTGCTGGACCTGCATCTGCACCAGCATCAGTCCATACCCTTGTTCCTCAGCGCTCTCACCATGGAGCTCTTTACGAAAACCACAATCCAACACGCGATCGAATAG
Protein
MHNYPLQEVATLKYERDKATGKLNDLTTVRKNQESLIHRLQKRLLLVTRERDSYRQQLDCYEKELTVTLCGEEGAGSVALLSARVQQLEKSLQGYRDLIAAHDPHAHSKALESLRNEVTRWREEAEGARRDVTKLRTQRDLLTASLERIGPQTKVLHLTNNPAAEAQKQISKELEAAQEEIKKLKVALREGGAQADPEELQQMRQQLENSRIKLKRMKEEFTSSAQEYRDVCYMLLGYKIDRTGHKNYRISNMYAESSEEYLTFTLCDDGIEMVHTDYSETLGDLLDLHLHQHQSIPLFLSALTMELFTKTTIQHAIE

Summary

EMBL
KQ460436    KPJ14745.1    KQ459053    KPJ03950.1    NWSH01000136    PCG79189.1    + More
ODYU01000592    SOQ35646.1    AGBW02008579    OWR53006.1    KK852999    KDR12665.1    NEVH01010476    PNF32552.1    PNF32551.1    GEZM01062190    JAV69961.1    ADTU01014063    QOIP01000008    RLU19512.1    KQ976417    KYM89664.1    KK107109    EZA59273.1    APGK01018833    KB740084    KB631973    ENN81584.1    ERL87552.1    KQ979533    KYN21110.1    GANO01002732    JAB57139.1    KQ971351    EFA06492.1    KQ977444    KYN02678.1    KQ981319    KYN42719.1    GL888234    EGI64386.1    GL439840    EFN66723.1    KQ434839    KZC08068.1    DS232415    EDS41473.1    GANO01002733    JAB57138.1    GFDL01012190    JAV22855.1    KQ414616    KOC68502.1    JXUM01126591    KQ567085    KXJ69623.1    NNAY01001435    OXU23983.1    KQ982080    KYQ60133.1    CH478293    EAT33295.1    CH933808    EDW09158.1    AJVK01075524    KQ435847    KOX71089.1    GL452712    EFN76971.1    KZ288186    PBC34798.1    CH916367    EDW02211.1    CH940648    EDW61523.1    GL762454    EFZ21456.1    JTDY01007196    KOB65387.1    CM000071    EAL25639.1    LBMM01001520    KMQ96153.1    CH902619    EDV36696.1    CH479183    EDW36037.1    OUUW01000001    SPP72952.1    CP012524    ALC42038.1    JH815775    EKC18214.1    UFQS01000067    UFQT01000067    SSW98995.1    SSX19377.1    GBXI01007567    JAD06725.1    GDHF01012513    GDHF01004210    JAI39801.1    JAI48104.1    GAKP01017701    JAC41251.1    JRES01001012    KNC26141.1    KA648747    AFP63376.1    CM002911    KMY92493.1    CH480816    EDW47084.1    DS235442    EEB15829.1    CH963850    EDW74730.1    HACG01029763    CEK76628.1    CCAG010011922    EZ423010    ADD19286.1    CH954177    EDV59388.1    AF123262    AE013599    BT044526    AAD22056.1    AAF58955.1    ACH95300.1    AY060984    AAL28532.1    CM000157    EDW89487.1    AHAT01032352    AHAT01032353    GGFJ01002543    MBW51684.1    GGFJ01002606    MBW51747.1    GAMC01017921    JAB88634.1    BX649473    BX927386    HM210099    ADK12653.1    GDIQ01253684    JAJ98040.1    BC076947    AAH76947.1    GDIP01047883    JAM55832.1   
Pfam
PF05557   MAD
Interpro
IPR008672   Mad1       
PDB
4DZO     E-value=8.24095e-15,     Score=195

Ontologies

Topology

Length:
318
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00801
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01654
outside
1  -  318
 
 

Population Genetic Test Statistics

Pi
315.192215
Theta
159.575965
Tajima's D
1.889033
CLR
0.237529
CSRT
0.862956852157392
Interpretation
Uncertain
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