Gene

KWMTBOMO11426

Pre Gene Modal

BGIBMGA001940

Annotation

PREDICTED:_tRNA_selenocysteine_1-associated_protein_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr19(-):5389123-5392223      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.813

CDS

ATGGCTATGCAGTGTCAATTGTGGATGGGCAGTTTGGAGCCCAATATGACTGAGAGTTTCATAATGGCAGCATTTAATAGACTGGGACAGAGACCTCTAGCAGTAAAAGTCATGAGGAACAAATTCACTGGGGAACCTGCAGGATATGCTTTTGTGCATTTTCAGACTGATGAAGAAGCGATTGACGCAATGCACAAATTGAATGGAAAACCCATACCAGGCACATTTCCAGTGGTTAGATTTAGACTAAACACAGCATCCAGAGAAACTAGAGCCAATATGCAACATGAAAGAGAATTTTCTGTTTGGGTTGGAGATCTAAGCCCTGACGTTGATGATTACTCTCTTTATAGAGTGTTTGCTTCTAAATATACTTCCATAAAAACTGCTAAAGTGATATTAGATAATTCTGGCTATACAAAAGGATATGGCTTTGTCAGATTTGGTAATGAAGATGAGCAACGTAATGCACTATATGCTATGAATGGTTATTGTGGACTCGGAACAAAACCTCTCAAAATTTGCACAGCTGTACCTAAACCTAAAAGTAATTTAACAACTGCTCAGTCTACTTCTACAACTTCAACCGCCACCTACACTAGCGGAACGGATTACAACCAATATTATGATCCGTCAGCCTATTGGCAAAATTATTCAGCCTGGTCTGGGTACTATGGACAGGGTGAACAAGTCACGACAGCTGCAGTCCAACCGGCAGTTGCATCTGATACTACACCAGCTGTCGCTGTCAAAACACAAACCGATGATTTGGTTCTCGTTGATCACAAGAAACCAATCGACGTGGATCATATGAATAATGAATTTTTGGACGTAAACATTTCGCTATGGGACAGTTTAGAAGGATCACAATGGTTCCCTCACGACGTCATAGAAGTTCACTCATAA

Protein

MAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNLTTAQSTSTTSTATYTSGTDYNQYYDPSAYWQNYSAWSGYYGQGEQVTTAAVQPAVASDTTPAVAVKTQTDDLVLVDHKKPIDVDHMNNEFLDVNISLWDSLEGSQWFPHDVIEVHS

Uniprot

H9IXF7   A0A2A4K4L4   A0A2A4K597   A0A2A4K5J8   A0A2H1V485   A0A212FGZ9   + More
A0A194RA85   A0A1E1WTM9   A0A194QG77   I4DNQ4   S4NIU3   A0A0L7L3K6   D6WTQ2   A0A1W4WS99   U5EYT5   A0A0T6B143   Q16NF8   A0A1Q3F9J2   A0A336LHD8   A0A1A9WGK5   D3TN68   A0A1A9WM21   A0A1A9YIJ2   A0A1A9UG38   A0A1B0AQS7   A0A1A9ZKE8   A0A1L8DHN3   B0W1B9   A0A034WHU9   A0A0K8TQW8   A0A0K8VPN4   A0A0A1WCU2   A0A1I8MA04   W8BQK9   A0A2A3E8H0   A0A088A7K4   A0A0L7R3J6   A0A182G498   A0A1I8QEM2   A0A154PPH3   B4I395   B4QA77   E9ISB9   A0A232F603   B4NYK8   B3N3S7   A0A151ILG1   A0A195DMN9   F4W691   A0A195AW65   A0A195FJJ4   A0A158NWQ0   A0A151WHS6   E2B9M2   Q8SXG7   A0A0J9QWJ5   A0A3B0JBZ3   B4KER1   K7J432   A0A1B0GH78   A0A026WCW2   A0A1L8DHL8   A0A0J7P245   A0A0L0C8H6   Q29LK2   B4GPU0   A0A2J7R5G2   A0A0M4EPM5   E2ACQ9   B4LT66   A0A1W4VY44   A0A182GMC9   J3JV09   A0A310SCF6   A0A067RG39   A0A1B6BZN0   A0A0M9A050   A0A1B0DKW3   B3MU28   B4JCL3   A0A1B6IG69   N6SY75   A0A1B6EK19   T1GQC1   T1P8N6   T1HZV8   A0A170Y0Y5   A0A1A9X4C5   A0A0V0G3D8   A0A069DYK9   A0A0P4VI42   A0A224XJL2   A0A023F3G9   A0A146LFD1   A0A0A9WVD5   A0A0K8SNC8   B4MZL2   E0VIB5  

Pubmed

19121390    22118469    26354079    22651552    23622113    26227816    + More
18362917    19820115    17510324    20353571    25348373    26369729    25830018    25315136    24495485    26483478    17994087    21282665    28648823    17550304    21719571    21347285    20798317    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    20075255    24508170    30249741    26108605    15632085    22516182    24845553    23537049    26334808    27129103    25474469    26823975    25401762    20566863   

EMBL

BABH01018079    NWSH01000136    PCG79195.1    PCG79196.1    PCG79194.1    ODYU01000592    + More
SOQ35641.1    AGBW02008579    OWR53000.1    KQ460436    KPJ14753.1    GDQN01007879    GDQN01000665    JAT83175.1    JAT90389.1    KQ459053    KPJ03955.1    AK403079    BAM19544.1    GAIX01013929    JAA78631.1    JTDY01003160    KOB70042.1    KQ971352    EFA06730.1    GANO01000083    JAB59788.1    LJIG01016283    KRT81065.1    CH477825    EAT35872.1    GFDL01010791    JAV24254.1    UFQS01000002    UFQT01000002    SSW96723.1    SSX17110.1    CCAG010020614    EZ422870    ADD19146.1    JXJN01002024    GFDF01008116    JAV05968.1    DS231821    EDS44989.1    GAKP01005257    JAC53695.1    GDAI01000849    JAI16754.1    GDHF01011473    JAI40841.1    GBXI01017513    JAC96778.1    GAMC01005210    GAMC01005208    JAC01348.1    KZ288347    PBC27572.1    KQ414663    KOC65403.1    JXUM01042041    KQ561308    KXJ79043.1    KQ435012    KZC13762.1    CH480820    EDW54240.1    CM000361    EDX03715.1    GL765324    EFZ16553.1    NNAY01000926    OXU25869.1    CM000157    EDW87641.1    CH954177    EDV57736.1    KQ977120    KYN05590.1    KQ980724    KYN14096.1    GL887707    EGI70226.1    KQ976731    KYM76275.1    KQ981523    KYN40427.1    ADTU01028324    KQ983112    KYQ47370.1    GL446573    EFN87603.1    AE014134    AY089645    AAF51009.2    AAL90383.1    CM002910    KMY88079.1    OUUW01000004    SPP79874.1    CH933807    EDW12961.1    AAZX01006564    AJWK01004029    KK107262    QOIP01000010    EZA53902.1    RLU17297.1    GFDF01008141    JAV05943.1    LBMM01000338    KMR00326.1    JRES01000753    KNC28743.1    CH379060    EAL34043.2    CH479187    EDW39612.1    NEVH01006994    PNF36067.1    CP012523    ALC38557.1    GL438568    EFN68803.1    CH940649    EDW64908.2    JXUM01074475    KQ562831    KXJ75050.1    BT127074    AEE62036.1    KQ761467    OAD57505.1    KK852527    KDR22008.1    GEDC01030571    JAS06727.1    KQ435789    KOX74447.1    AJVK01035793    CH902624    EDV33357.1    CH916368    EDW04177.1    GECU01021784    GECU01003024    JAS85922.1    JAT04683.1    APGK01052182    KB741211    ENN72739.1    GECZ01031490    JAS38279.1    CAQQ02042346    KA645039    AFP59668.1    ACPB03012599    GEMB01003818    JAR99436.1    GECL01003516    JAP02608.1    GBGD01002210    JAC86679.1    GDKW01003138    JAI53457.1    GFTR01005192    JAW11234.1    GBBI01002829    JAC15883.1    GDHC01011771    JAQ06858.1    GBHO01033136    GBRD01012161    GDHC01017669    JAG10468.1    JAG53663.1    JAQ00960.1    GBRD01010982    JAG54842.1    CH963920    EDW77797.2    DS235191    EEB13121.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000007266    UP000192223    UP000008820    UP000091820    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000002320    UP000095301    UP000242457    UP000005203    UP000053825    UP000069940    UP000249989    UP000095300    UP000076502    UP000001292    UP000000304    UP000215335    UP000002282    UP000008711    UP000078542    UP000078492    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000008237    UP000000803    UP000268350    UP000009192    UP000002358    UP000092461    UP000053097    UP000279307    UP000036403    UP000037069    UP000001819    UP000008744    UP000235965    UP000092553    UP000000311    UP000008792    UP000192221    UP000027135    UP000053105    UP000092462    UP000007801    UP000001070    UP000019118    UP000015102    UP000015103    UP000007798    UP000009046   

PRIDE

H9IXF7    Q8SXG7   

Pfam

PF17654   Trnau1ap        + More
PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR041085   TSAP1_C       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034510   SECp43_RRM2       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12612  RRM2_SECp43

ProteinModelPortal

H9IXF7   A0A2A4K4L4   A0A2A4K597   A0A2A4K5J8   A0A2H1V485   A0A212FGZ9   + More
A0A194RA85   A0A1E1WTM9   A0A194QG77   I4DNQ4   S4NIU3   A0A0L7L3K6   D6WTQ2   A0A1W4WS99   U5EYT5   A0A0T6B143   Q16NF8   A0A1Q3F9J2   A0A336LHD8   A0A1A9WGK5   D3TN68   A0A1A9WM21   A0A1A9YIJ2   A0A1A9UG38   A0A1B0AQS7   A0A1A9ZKE8   A0A1L8DHN3   B0W1B9   A0A034WHU9   A0A0K8TQW8   A0A0K8VPN4   A0A0A1WCU2   A0A1I8MA04   W8BQK9   A0A2A3E8H0   A0A088A7K4   A0A0L7R3J6   A0A182G498   A0A1I8QEM2   A0A154PPH3   B4I395   B4QA77   E9ISB9   A0A232F603   B4NYK8   B3N3S7   A0A151ILG1   A0A195DMN9   F4W691   A0A195AW65   A0A195FJJ4   A0A158NWQ0   A0A151WHS6   E2B9M2   Q8SXG7   A0A0J9QWJ5   A0A3B0JBZ3   B4KER1   K7J432   A0A1B0GH78   A0A026WCW2   A0A1L8DHL8   A0A0J7P245   A0A0L0C8H6   Q29LK2   B4GPU0   A0A2J7R5G2   A0A0M4EPM5   E2ACQ9   B4LT66   A0A1W4VY44   A0A182GMC9   J3JV09   A0A310SCF6   A0A067RG39   A0A1B6BZN0   A0A0M9A050   A0A1B0DKW3   B3MU28   B4JCL3   A0A1B6IG69   N6SY75   A0A1B6EK19   T1GQC1   T1P8N6   T1HZV8   A0A170Y0Y5   A0A1A9X4C5   A0A0V0G3D8   A0A069DYK9   A0A0P4VI42   A0A224XJL2   A0A023F3G9   A0A146LFD1   A0A0A9WVD5   A0A0K8SNC8   B4MZL2   E0VIB5  

PDB

2DIV     E-value=5.6006e-20,     Score=239

KEGG

733055    no KO assigned | (RefSeq) tRNA selenocysteine 1-associated protein 1

GO

GO:0003723   GO:1990904   GO:0003676   GO:0000166   GO:0016020   GO:0005216   GO:0006811   GO:0008152   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02581

Exp number, first 60 AAs:

0.02558

Total prob of N-in:

0.02759

outside

1  -  301

 

 

Pi

202.184695

Theta

211.219057

Tajima's D

-0.556559

CLR

0.08699

CSRT

0.226188690565472

Interpretation

Uncertain