Gene

KWMTBOMO11423

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr19(-):5353009-5356063      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.951

CDS

ATGAAGTCGACAAAAAAAAAGAAAAGGGTTTCACAGGCGGTTCCCCATTCCACATATAATGTGGATTTCAGCAATGTCAGGGGCCTACATAGCAACCTTGACGCCGTACACCACCACCTTGAGACGGCGCAGCCTGCCCTGCTTTTTTTAACGGAGACACAGATATCTGCTCCGGATGACACCTCATACCTTGAGTACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGCGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTTCGGGGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGGGGGCCGTAGCCGAATCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGTTTGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATCGAGGGGCACGAGCTTTCTTTGTTGGACCTTCTGCTGACCACAGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCCGCTTGGATCGTCTGATCACTGCCTTATTCGTGCTGCCGTACCACTCTCTCGTCCTGATCGTCGAACGACGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGATTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGCTCTGCTTTTCCTCTGCTGATCCTGACGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCATCCTCTGAAGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACGCCTCAAGCGGTCCGCATACGTGGCATGGGATAATGCCAGGAGACGTCGGGATCCTAACATCTCAGGGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTAATTGCCAAGGCGAAGTCGGAGCACGTTGCTAGAGTTGGCGAGCGATTGAAGAGCTATCCCTCCGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGAAACTTTTGCAGGTCTAGTCTCCCACCACTGCGCAAGTCCGATGACAGTCTGGCCCACAGCGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGTGTGATAGCTCCCTGCCGGATATCTGCTTCACACAGTGTGCAGTCAGGCGGGAGCTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGACGGCATCCCCGCAGTGGTTTTGAAAACGTGCGCCCCTGAGCTGACACCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCACTAACAGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATTATAAACACACAACTCCTGAAGTATCTTGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTAGTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCAGATGATAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACGTTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTTAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAACATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCTCGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MKSTKKKKRVSQAVPHSTYNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEQRDLSLLWLRVDHGGRSRIYACLYRSHSSDAGSALFEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGFSQLVTQPTRVPDIEGHELSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRLCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRCDSSLPDICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLSHRWAEALESKGEALAGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDVSSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPTSRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSSVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   A0A3S2M451   A0A3S2NTH0   A0A3S2LQP1   A0A3D5S1K1   T2M4I6   + More
A0A0P4VVV8   A0A0P4VTV9   A0A0P4VPK5   A0A0P4VX79   W4YEI4   A0A2H9T4U7   W4XMI9   W4XUR2   W4Y4X9   A0A2H9T5P0   A0A2H9T441   W4YXS6   E3NNZ5   A0A2H9T3F5   K7F1Y6   A0A210QEX7   A0A2H9T462   K7EZK2   K7F1R1   K7EYI3   K7EXF8   K7EYN3   K7EYI9   K7EZE8   K7EX17   K7F0S9   K7EX85   K7F0Z0   K7F0K7   K7F0B0   K7EXH8   A0A147BQS9   A0A2B4RWS1   K7FWU2   A0A131XUP0   K7EXV3   W4YYU9  

Pubmed

30148503    24065732    29150518    17381049    28812685    29652888    + More

EMBL

AY359886    AAQ57129.1    RSAL01000041    RVE50934.1    RSAL01000090    RVE48098.1    + More
RSAL01000422    RVE41792.1    DPOC01000269    HCX22453.1    HAAD01000593    CDG66825.1    GDRN01111277    JAI56804.1    GDRN01111334    JAI56796.1    GDRN01111278    JAI56803.1    GDRN01111326    JAI56798.1    AAGJ04103823    NSIT01000225    PJE78229.1    AAGJ04112043    AAGJ04060226    AAGJ04110620    NSIT01000164    PJE78524.1    NSIT01000300    PJE77993.1    AAGJ04111627    DS269285    EFP11931.1    NSIT01000412    PJE77717.1    AGCU01114349    NEDP02004020    OWF47171.1    NSIT01000294    PJE78013.1    AGCU01024294    AGCU01106033    AGCU01196302    AGCU01054950    AGCU01124120    AGCU01196469    AGCU01004663    AGCU01018346    AGCU01205039    AGCU01146099    AGCU01131815    AGCU01192974    AGCU01036357    AGCU01006877    GEGO01002277    JAR93127.1    LSMT01000295    PFX21010.1    AGCU01095800    AGCU01095801    AGCU01095802    AGCU01095803    AGCU01095804    AGCU01095805    AGCU01095806    AGCU01095807    AGCU01095808    AGCU01095809    GEFM01005848    JAP69948.1    AGCU01015040    AAGJ04114595   

Proteomes

UP000283053    UP000007110    UP000008281    UP000007267    UP000242188    UP000225706    + More

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00002   7tm_2
PF04939   RRS1
PF01585   G-patch
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000832   GPCR_2_secretin-like       
IPR017981   GPCR_2-like       
IPR007023   Ribosom_reg       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR019787   Znf_PHD-finger       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF57667   SSF57667       
SSF57903   SSF57903       

Gene 3D

3.60.10.10     3.30.70.330     3.30.40.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2M451   A0A3S2NTH0   A0A3S2LQP1   A0A3D5S1K1   T2M4I6   + More
A0A0P4VVV8   A0A0P4VTV9   A0A0P4VPK5   A0A0P4VX79   W4YEI4   A0A2H9T4U7   W4XMI9   W4XUR2   W4Y4X9   A0A2H9T5P0   A0A2H9T441   W4YXS6   E3NNZ5   A0A2H9T3F5   K7F1Y6   A0A210QEX7   A0A2H9T462   K7EZK2   K7F1R1   K7EYI3   K7EXF8   K7EYN3   K7EYI9   K7EZE8   K7EX17   K7F0S9   K7EX85   K7F0Z0   K7F0K7   K7F0B0   K7EXH8   A0A147BQS9   A0A2B4RWS1   K7FWU2   A0A131XUP0   K7EXV3   W4YYU9  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003723   GO:0003676   GO:0046872  

PANTHER

PTHR17602   PTHR13288   PTHR45951:SF3  

Length:

959

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00918999999999999

Exp number, first 60 AAs:

0.00041

Total prob of N-in:

0.00053

outside

1  -  959

 

 

Pi

123.96319

Theta

18.371507

Tajima's D

0

CLR

5.013311

CSRT

0.370781460926954

Interpretation

Uncertain