Gene

KWMTBOMO11422

Pre Gene Modal

BGIBMGA001881

Annotation

Potassium/sodium_hyperpolarization-activated_cyclic_nucleotide-gated_channel_1_[Papilio_xuthus]

Location

Bomo_Chr19(+):5322204-5330156      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.996

CDS

ATGTCGCTGAAGCAGGGCAGCGGCACCGGCAAAGTACACTTCGGTGGCCTGGACGATGTGTCCTTGTACGGAACGCCAGTGGAACCAGCACCGCCGGCGCCGGACGCAAAGCAGGGCTTCCTGCGGAACCAGTTGCAAGCCCTCTTCCAGCCCACCGACAACAAACTCGCGATGAAACTATTCGGCTCAAAGAAGGCACTTATGAAGGAGCGCATCAGACAGAAGGCGGCGGGACATTGGGTCATCCATCCGTGCAGTAGTTTCAGGTATGTCCAGATTCAGCACTTTTCTATTTTGTTAATGAGATGA

Protein

MSLKQGSGTGKVHFGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKAAGHWVIHPCSSFRYVQIQHFSILLMR

Uniprot

A0A194QEW2   A0A194RFP5   H9IX98   A0A212F2B3   A0A2H1V032   A0A0L7KPU8   + More
O96777   A0A2A4K4L7   A0A2A4K4K4   F4W9U8   E2BZX9   E2A5U2   V9I8E8   A0A0C9RQN1   A0A067RJN2   V9IAA4   A0A026WCB0   A0A0J7P2B4   A0A1W4XCU8   V9I9T3   A0A2A3EAG6   Q6WL04   A0A1W4XCL5   A0A195CG79   K7INL3   A0A195BRD4   A0A1W4X249   A0A151JPH3   A0A151WKF2   A0A1B6K7N7   A0A158NZ19   A0A0T6BED1   Q5XQT5   N6SRH5   A0A195EY94   A0A1Y1KXL2   A0A1Y1KXP8   A0A1Y1L055   A0A0C9RTG4   A0A0L7R2N3   Q5XQT6   A0A088A929   A0A154P706   K7INL2   A0A232EZ95   A0A1B6KBD0   A0A0P4VVJ6   A0A3L8DY95   E0W2H0   E9IFR6   A0A1Y1L2G8   A0A146L7B4   A0A146LBW4   A0A139WFA2   A0A0V0G8Y1   A0A069DW42   T1HZI8   A0A1B6EXC7   A0A1B6GS55   A0A1B6HGY3   Q06IP4   Q06IQ0   Q06IP2   A0A3Q8TMV0   Q06IP3   Q06IP7   Q06IP5   Q06IP1   Q06IP9   Q6WL05   A0A1B6C0Y8   A0A2P6L6H5   A0A3R7SWG4   A0A0P5M0J4   A0A0P6GXS3   A0A0P5Z2H7   A0A0P5AGG2   A0A0P5ACY5   A0A0P5AA68   A0A0P5EAB5   A0A0P6FJJ4   A0A0N8BGC6   A0A0P4XWK1   A0A0P5ASL0   A0A0P5CIS0   A0A0P5ME34   A0A0P5JMZ8   A0A0P5IDY4   A0A0P6EU10   A0A0P5QHU2   A0A0P5MF30   A0A0P5LT45   A0A0P5MQ71   A0A0P6GA18   A0A0P5H259   A0A0P5ASP2   A0A0P4ZTE3   A0A0P4YXL4   A0A0P5GWF7   A0A0P5DZP8  

Pubmed

26354079    19121390    22118469    26227816    10319439    21719571    + More
20798317    24845553    24508170    14563363    20075255    21347285    15388341    23537049    28004739    28648823    27129103    30249741    20566863    21282665    26823975    18362917    19820115    26334808    17409170    30504282    15845091   

EMBL

KQ459053    KPJ03959.1    KQ460436    KPJ14756.1    BABH01018082    AGBW02010766    + More
OWR47880.1    ODYU01000064    SOQ34197.1    JTDY01007534    KOB65130.1    AJ012664    CAA10110.1    NWSH01000136    PCG79187.1    PCG79185.1    GL888033    EGI69084.1    GL451708    EFN78756.1    GL437059    EFN71214.1    JR036802    AEY57408.1    GBYB01010800    JAG80567.1    KK852430    KDR24022.1    JR036800    AEY57406.1    KK107321    EZA52674.1    LBMM01000321    KMR01382.1    JR036801    AEY57407.1    KZ288318    PBC28282.1    AY280848    AAQ16312.1    KQ977876    KYM99103.1    KQ976423    KYM88774.1    KQ978765    KYN28538.1    KQ983012    KYQ48353.1    GECU01000292    JAT07415.1    ADTU01000847    ADTU01000848    ADTU01000849    ADTU01000850    ADTU01000851    ADTU01000852    ADTU01000853    ADTU01000854    ADTU01000855    ADTU01000856    LJIG01001439    KRT85501.1    AY739659    AAU85298.1    APGK01059354    KB741293    KB631982    ENN70214.1    ERL87627.1    KQ981909    KYN33188.1    GEZM01070974    JAV66153.1    GEZM01070975    JAV66152.1    GEZM01070976    JAV66151.1    GBYB01010781    JAG80548.1    KQ414666    KOC65093.1    AY739658    AAU85297.1    KQ434829    KZC07726.1    NNAY01001523    OXU23701.1    GEBQ01031210    JAT08767.1    GDKW01002950    JAI53645.1    QOIP01000002    RLU25421.1    DS235878    EEB19826.1    GL762889    EFZ20589.1    GEZM01070973    JAV66155.1    GDHC01014301    JAQ04328.1    GDHC01013584    JAQ05045.1    KQ971354    KYB26551.1    GECL01002210    JAP03914.1    GBGD01000828    JAC88061.1    ACPB03006006    ACPB03006007    ACPB03006008    GECZ01027105    JAS42664.1    GECZ01004576    JAS65193.1    GECU01033827    GECU01003848    JAS73879.1    JAT03859.1    DQ865256    ABI94039.1    DQ865250    ABI94033.1    DQ865258    ABI94041.1    MH368784    AZL49143.1    DQ865257    ABI94040.1    DQ865253    ABI94036.1    DQ865255    ABI94038.1    DQ865259    ABI94042.1    DQ865251    ABI94034.1    AY280847    AAQ16311.1    GEDC01030116    JAS07182.1    MWRG01001444    PRD34188.1    QCYY01001360    ROT78575.1    GDIQ01162353    JAK89372.1    GDIQ01039651    JAN55086.1    GDIP01050945    JAM52770.1    GDIP01199469    JAJ23933.1    GDIP01200779    JAJ22623.1    GDIP01201978    JAJ21424.1    GDIP01162922    JAJ60480.1    GDIQ01056438    JAN38299.1    GDIQ01180451    JAK71274.1    GDIP01236770    JAI86631.1    GDIP01209011    JAJ14391.1    GDIP01169965    JAJ53437.1    GDIQ01161010    JAK90715.1    GDIQ01196348    JAK55377.1    GDIQ01216041    JAK35684.1    GDIQ01059086    JAN35651.1    GDIQ01113921    JAL37805.1    GDIQ01180450    JAK71275.1    GDIQ01175789    JAK75936.1    GDIQ01175788    JAK75937.1    GDIQ01036395    JAN58342.1    GDIQ01239046    JAK12679.1    GDIP01194979    JAJ28423.1    GDIP01221774    JAJ01628.1    GDIP01220716    JAJ02686.1    GDIQ01235478    JAK16247.1    GDIP01153421    JAJ69981.1   

Proteomes

UP000053268    UP000053240    UP000005204    UP000007151    UP000037510    UP000218220    + More
UP000007755    UP000008237    UP000000311    UP000027135    UP000053097    UP000036403    UP000192223    UP000242457    UP000078542    UP000002358    UP000078540    UP000078492    UP000075809    UP000005205    UP000019118    UP000030742    UP000078541    UP000053825    UP000005203    UP000076502    UP000215335    UP000279307    UP000009046    UP000007266    UP000015103    UP000283509   

PRIDE

H9IX98   

Pfam

PF08412   Ion_trans_N        + More
PF00027   cNMP_binding
PF00520   Ion_trans

Interpro

IPR013621   Ion_trans_N        + More
IPR018490   cNMP-bd-like       
IPR014710   RmlC-like_jellyroll       
IPR018488   cNMP-bd_CS       
IPR003938   K_chnl_volt-dep_EAG/ELK/ERG       
IPR000595   cNMP-bd_dom       
IPR005821   Ion_trans_dom       
IPR030173   HCN4       

SUPFAM

SSF51206   SSF51206       

Gene 3D

2.60.120.10    

CDD

cd00038  CAP_ED

ProteinModelPortal

A0A194QEW2   A0A194RFP5   H9IX98   A0A212F2B3   A0A2H1V032   A0A0L7KPU8   + More
O96777   A0A2A4K4L7   A0A2A4K4K4   F4W9U8   E2BZX9   E2A5U2   V9I8E8   A0A0C9RQN1   A0A067RJN2   V9IAA4   A0A026WCB0   A0A0J7P2B4   A0A1W4XCU8   V9I9T3   A0A2A3EAG6   Q6WL04   A0A1W4XCL5   A0A195CG79   K7INL3   A0A195BRD4   A0A1W4X249   A0A151JPH3   A0A151WKF2   A0A1B6K7N7   A0A158NZ19   A0A0T6BED1   Q5XQT5   N6SRH5   A0A195EY94   A0A1Y1KXL2   A0A1Y1KXP8   A0A1Y1L055   A0A0C9RTG4   A0A0L7R2N3   Q5XQT6   A0A088A929   A0A154P706   K7INL2   A0A232EZ95   A0A1B6KBD0   A0A0P4VVJ6   A0A3L8DY95   E0W2H0   E9IFR6   A0A1Y1L2G8   A0A146L7B4   A0A146LBW4   A0A139WFA2   A0A0V0G8Y1   A0A069DW42   T1HZI8   A0A1B6EXC7   A0A1B6GS55   A0A1B6HGY3   Q06IP4   Q06IQ0   Q06IP2   A0A3Q8TMV0   Q06IP3   Q06IP7   Q06IP5   Q06IP1   Q06IP9   Q6WL05   A0A1B6C0Y8   A0A2P6L6H5   A0A3R7SWG4   A0A0P5M0J4   A0A0P6GXS3   A0A0P5Z2H7   A0A0P5AGG2   A0A0P5ACY5   A0A0P5AA68   A0A0P5EAB5   A0A0P6FJJ4   A0A0N8BGC6   A0A0P4XWK1   A0A0P5ASL0   A0A0P5CIS0   A0A0P5ME34   A0A0P5JMZ8   A0A0P5IDY4   A0A0P6EU10   A0A0P5QHU2   A0A0P5MF30   A0A0P5LT45   A0A0P5MQ71   A0A0P6GA18   A0A0P5H259   A0A0P5ASP2   A0A0P4ZTE3   A0A0P4YXL4   A0A0P5GWF7   A0A0P5DZP8  

PDB

5U6P     E-value=1.85761e-11,     Score=160

KEGG

101745162    K04955 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 | (RefSeq) potassium/

GO

GO:0016021   GO:0005249   GO:0005216   GO:0034765   GO:0005244   GO:0005267   GO:0006811  

PANTHER

PTHR45689:SF4  

Length:

102

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09339

Exp number, first 60 AAs:

0.00035

Total prob of N-in:

0.17732

outside

1  -  102

 

 

Pi

161.517436

Theta

164.993503

Tajima's D

0.038102

CLR

0.275073

CSRT

0.388130593470326

Interpretation

Uncertain