Gene

KWMTBOMO11421

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):5281119-5282964      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.736

CDS

ATGTGTGGAGTAACGAGAATGGATAGAATACGGAATGAATATGTTGGAGGAAGTCTGAAAGTGGCACCTGTGACAGAGAAGCTGAGAAGTGCACGTTTGGGATGGTATGGACATGTGATGAGACGAAATGAAAATGAGGCTGAGACATGGGTACTCAGCAAAAAAGATGAGAACCGTCTACTTGTGTTCGAGCGTAAGATTCTAAGACGGATATTCGGTGCTGTGCGGGAAAACCAGATATGGAGGACGCGCTATAACCACGAGTTGTATGATGTTTACAAAGATCCTAACATCATAACAACTATAAAGATTGAACGCCTACGATGGGCAGGACATGTGGTTCGAATGGAGAGTACCAGAATGCCAAGACAATTGCTCTATGGCAAACCAGAGGGCCGCAGAAGTCGTGGCAGACCCAAACTTCGATGGTTTGATGGCGTGGAGCGCGACCTCAAAAATATCGGCGTCAAGAACTGGAAGGAGAAAGCCCTGAACAGAGCAGTCTGGAGAGACATACTGGACCAGGCTAAGGCCCACCCTGGGCTGTAA

Protein

MCGVTRMDRIRNEYVGGSLKVAPVTEKLRSARLGWYGHVMRRNENEAETWVLSKKDENRLLVFERKILRRIFGAVRENQIWRTRYNHELYDVYKDPNIITTIKIERLRWAGHVVRMESTRMPRQLLYGKPEGRRSRGRPKLRWFDGVERDLKNIGVKNWKEKALNRAVWRDILDQAKAHPGL

Uniprot

D7F170   A0A2P8YGI5   A0A2P8ZAY7   A0A2P8Z6Z1   A0A2P8YGJ4   A0A2P8XYX9   + More
A0A2P8YK05   A0A2J7PD61   A0A2P8ZND2   A0A2P8XUU8   A0A2J7QUH3   A0A2J7RQE7   A0A0A9Y0T5   A0A023F0H0   A0A1B0EY09   A0A023F0F3   A0A2P8XS55   A0A2J7QCQ8   A0A2P8Z9K8   A0A0K8TJE5   A0A2P8YFW0   A0A0K8TRS6   A0A2J7QP31   A0A2P8Z9L8   A0A1B6HHE4   A0A2P8YYC9   A0A2P8YTB7   A0A2P8YWR2   A0A2M3ZHX7   A0A2P8ZMR1   A0A2P8XC08   A0A1B6HD49   A0A146KNZ7   A0A2J7PM32   A0A2M4BN64   A0A2P8YDH4   A0A2M4CRR0   A0A2P8XAX7   A0A2M4CRT4   A0A2P8YK84   A0A0J7KMY2   A0A2M4A6U1   A0A2P8YXX2   A0A2M4A3Y0   A0A2M4A3Z2   A0A367YPS2   A0A2M4A809   A0A1B6FK13   A0A2M4ACI4   V5GM53   A0A2M4A2X8   A0A2M4A3H0   A0A2P8Z0K7   A0A2L2Y879   A0A2L2Y866   A0A2P8YW46   A0A0K8SN56   A0A023EZ18   A0A2P8ZCD0   A0A2P8XVL4   A0A0E4G8L2   A0A3N0CRI3   A0A067RJI6   A0A2P8YIA8   A0A2P8YQ76   A0A2P8Y1L9   A0A2J7RQQ3   A0A023EZ68   E2AG07   E2ALS0   A0A2P8YZN1   A0A2P8YK77   A0A023EXX8   A0A2P8Z546   A0A2P8ZDC1   A0A034V1D7   A0A0A9W1M5   A0A0A9VRC6   A0A2J7QTF3   A0A2P8XJ60   A0A2S2Q1T4   A0A0E4GBH7   A0A2P8YPE1   A0A1B0CZ85  

Pubmed

20470440    29403074    25401762    25474469    26369729    26823975    + More
26561354    24845553    20798317    24945155    25348373   

EMBL

FJ265555    ADI61823.1    PYGN01000613    PSN43351.1    PYGN01000119    PSN53667.1    + More
PYGN01000168    PSN52268.1    PYGN01000612    PSN43376.1    PYGN01001144    PSN37211.1    PYGN01000540    PSN44578.1    NEVH01026393    PNF14276.1    PYGN01000010    PSN58017.1    PYGN01001312    PSN35775.1    NEVH01010582    PNF32229.1    NEVH01001338    PNF43056.1    GBHO01016952    JAG26652.1    GBBI01004263    JAC14449.1    AJVK01015081    GBBI01004261    JAC14451.1    PYGN01001438    PSN34841.1    NEVH01016288    PNF26362.1    PYGN01000136    PSN53183.1    GBRD01000202    JAG65619.1    PYGN01000629    PSN43121.1    GDAI01000742    JAI16861.1    NEVH01012097    PNF30338.1    PSN53184.1    GECU01033590    JAS74116.1    PYGN01000287    PSN49259.1    PYGN01000372    PSN47498.1    PYGN01000313    PSN48686.1    GGFM01007299    MBW28050.1    PYGN01000015    PSN57778.1    PYGN01003402    PSN29545.1    GECU01035086    JAS72620.1    GDHC01021627    JAP97001.1    NEVH01024421    PNF17395.1    GGFJ01005240    MBW54381.1    PYGN01000682    PSN42293.1    GGFL01003846    MBW68024.1    PYGN01006068    PSN29155.1    GGFL01003845    MBW68023.1    PYGN01000535    PSN44652.1    LBMM01005351    KMQ91586.1    GGFK01003183    MBW36504.1    PYGN01000294    PSN49097.1    GGFK01002192    MBW35513.1    GGFK01002196    MBW35517.1    QOUI01000020    RCK67885.1    GGFK01003613    MBW36934.1    GECZ01019223    JAS50546.1    GGFK01005184    MBW38505.1    GALX01003282    JAB65184.1    GGFK01001798    MBW35119.1    GGFK01001949    MBW35270.1    PYGN01000254    PSN50032.1    IAAA01009800    IAAA01009801    LAA04372.1    IAAA01009799    LAA04366.1    PYGN01000325    PSN48468.1    GBRD01011073    JAG54751.1    GBBI01004262    JAC14450.1    PYGN01000106    PSN54154.1    PYGN01001294    PSN35934.1    HACL01000314    CFW94608.1    RAPH01000014    RNL66055.1    KK852643    KDR19558.1    PYGN01000575    PSN43995.1    PYGN01000436    PSN46412.1    PYGN01001045    PSN38155.1    NEVH01000618    PNF43171.1    GBBI01004199    JAC14513.1    GL439190    EFN67634.1    GL440612    EFN65619.1    PYGN01000266    PSN49694.1    PSN44642.1    GAPW01000199    JAC13399.1    PYGN01000191    PSN51624.1    PYGN01000092    PSN54488.1    GAKP01022638    GAKP01022636    GAKP01022635    JAC36314.1    GBHO01044844    JAF98759.1    GBHO01045275    JAF98328.1    NEVH01011195    PNF31853.1    PYGN01001951    PSN32040.1    GGMS01002456    MBY71659.1    HACL01000173    CFW94467.1    PYGN01000451    PSN46127.1    AJVK01002125   

Proteomes

UP000245037    UP000235965    UP000092462    UP000036403    UP000252770    UP000279711    + More
UP000027135    UP000000311   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F170   A0A2P8YGI5   A0A2P8ZAY7   A0A2P8Z6Z1   A0A2P8YGJ4   A0A2P8XYX9   + More
A0A2P8YK05   A0A2J7PD61   A0A2P8ZND2   A0A2P8XUU8   A0A2J7QUH3   A0A2J7RQE7   A0A0A9Y0T5   A0A023F0H0   A0A1B0EY09   A0A023F0F3   A0A2P8XS55   A0A2J7QCQ8   A0A2P8Z9K8   A0A0K8TJE5   A0A2P8YFW0   A0A0K8TRS6   A0A2J7QP31   A0A2P8Z9L8   A0A1B6HHE4   A0A2P8YYC9   A0A2P8YTB7   A0A2P8YWR2   A0A2M3ZHX7   A0A2P8ZMR1   A0A2P8XC08   A0A1B6HD49   A0A146KNZ7   A0A2J7PM32   A0A2M4BN64   A0A2P8YDH4   A0A2M4CRR0   A0A2P8XAX7   A0A2M4CRT4   A0A2P8YK84   A0A0J7KMY2   A0A2M4A6U1   A0A2P8YXX2   A0A2M4A3Y0   A0A2M4A3Z2   A0A367YPS2   A0A2M4A809   A0A1B6FK13   A0A2M4ACI4   V5GM53   A0A2M4A2X8   A0A2M4A3H0   A0A2P8Z0K7   A0A2L2Y879   A0A2L2Y866   A0A2P8YW46   A0A0K8SN56   A0A023EZ18   A0A2P8ZCD0   A0A2P8XVL4   A0A0E4G8L2   A0A3N0CRI3   A0A067RJI6   A0A2P8YIA8   A0A2P8YQ76   A0A2P8Y1L9   A0A2J7RQQ3   A0A023EZ68   E2AG07   E2ALS0   A0A2P8YZN1   A0A2P8YK77   A0A023EXX8   A0A2P8Z546   A0A2P8ZDC1   A0A034V1D7   A0A0A9W1M5   A0A0A9VRC6   A0A2J7QTF3   A0A2P8XJ60   A0A2S2Q1T4   A0A0E4GBH7   A0A2P8YPE1   A0A1B0CZ85  

KEGG

101744029    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.29283

outside

1  -  182

 

 

Pi

328.239693

Theta

198.854413

Tajima's D

1.965992

CLR

0

CSRT

0.879106044697765

Interpretation

Uncertain