Gene

KWMTBOMO11418  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001942

Annotation

PREDICTED:_dynein_intermediate_chain_2?_ciliary_[Bombyx_mori]

Location

Bomo_Chr19(-):5062146-5080564      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.792

CDS

ATGCTGAAGGCCATGATAAAACGTGCACTTAATGTGAAAGAGGAAAAAGTGCTTTTGAAGAAAACAATACAGTGCTTAGATCAGAAAGACGCTGCGTCCAAGTCCCGCGGTAATTTAATTGAAGATGAAGCTCTGGAGTGGCTTAAGCCGAGAGCTCTCATTAAGCCTGATGATCAAGAAGATGTACCGGAGGCTGATCTAGATGAAGAAGTCGGGCGAGTTTTAACAACAATAAATCCTAATTGGGTAGCTGACGAAGTGGCTTATCATTACGGGCTAGGAAGATTTGTCGCCAAGCCAAAGCCGACCTTCGGTAAAGCGTACCCCCTATATATTTATCAGGGGACGGCTATTAGGAAAGATTCAGAAGAAGCTAAAGCACAAATTGCTGCAGGATATGGTATGGTTGGCTTTGATGATGCTGGACCAAAACGGGCCAAGGTAAAAAAGTCTGCCGCTGAAGAGGAGGAGGAAGAAGAACCCGAACCAGAACCACAGCCACCTGAGGAGGCTAAAGCTGAAGAGGACGCAGTAGCAGATGAAGAGAAACCTAGTGAAGCTGTAGAAGGTCCACACGAACCAGAACCTGTAGCTGATGATTTAGAGGCTACGGCAGGAGATGTTGGAGAGGAGCCGGAAGGAGATGAAAAAGATGAATCGAAAGACACAGGAGAAGAAGTACTTGAAATCAAGCCTCGTGTGAAGAAATTGGCAAATCAGTTCAATTTCTGTGAACGAGCAGCTCTTACTTACAACTTCCCCAGAAGGAGTGTGGACACTCAAACTATACCACCACCGAGAGCCAATTACGGCAGTACTGCGCTACAGTGTATTATATTCGATTACTATCAAGAGGACTACGCCAGAAAACAGCGTGAGAAAGAGGAGGACAAACCGAAAAGGCTTCGCAAGAAGACAGCTAAACACGTGAAATCCGCTCAACAAATTCATGATGAACAACTAGCGCAACGCATACGTGAAGCTTGGACGATACTGGAGAGACTTGTCAATCAGAACATCTATGACGATATTGCTCAAGATTATCGATATTGGGATGATCCTTCGGACGAATTTCGTGAAGGCATGGGCTCGTTACTGCCGCTGTGGAGGTTCCAATTCGAGCCCATGCGCAGTCACGCTGTTTGTGATGTCCAATGGAACCCGCACTATCAGGACCTGTTTGCGGTCGCTTACGGATCTTTGGATTTTACGAGCCAACAAAAAACGGGATGTCTCTGTCTATACAGCATCAAGAATCCAGCGTACCCTGAATACGCGGTCGTAACTGATTCTCCGGTTATTTGCCTTGATGTCTATAAAGAAACTCCGTATCTTATCTGCGTCGGACTTTACGATGGAAACGTTTGCGTCTACAATGCTCAGTTAACCCTCGAGTCATCTTACCAATACAAATCGGATTCTGTACGAGATAAGCACAGCAACATCGTCTGGGAGGTGCGTTGGGGAGCACGTTTGATTGATGGTGAATCGACATTTTTCTCGATCTCCGGCGACGGACGCGTCGTCCAATGGGCGGTGATGCCGGGCGAGCTCCAAGCGACCACTATCATCACGCTCACGTCCAACGTGCCTCCCATACCGGGACCTGACGGCACCATGATCAACGTTAACAGCTGCGGTAGCTGCATATGTTTTCACCCAGAGAAGCCGGATATCTTCATGGTGGGTACCGAAGACGGCATGATCCACACTTGCTCCCTCAAATACAACCGGAACTATGTGCGATCGGTTCAAGGACACCACATGCCGGTCTACAGGATCAACTATAACTACTTTAATAACAGTATCTATGCGTCATGCTCGGGTGACTGGAGGGTCAAAATTTGGGAAGACGGAAGAGAGGAGCCGTTGTTTATGTTTGAACTGGGCGCGGCGGTGGGCGACGTAAAATGGGCACCGTATTCAAGCACTGTGTTTGCCGCTTGCACGGCTGATGGAAAGGTTTACGTGTACGATTTGAACGTGAACAAGTACAGGCCTATATGCGTCCAAGCTGTTGTCTCCAAAAAGACTAAGAAGTTGACAAGAATCGATTTCAACACGCGTTTGCCTGTGATCGTATGTGGCGACACAAAAGGAACATGTCACGTTTTAAAGTTATCACCAAATTTGAGGGTAATGTGCAAGCCACCGAAAAAAGCTCAAGGAGTCGACCAAAGGACCTTACAGATTATGAAATTGGATAAGTTACTCAGTTTGGTTCGTGATCCGCCTTATCAAACGGGAGTTGTTGACGAAAAGTTTGACGACGACTAA

Protein

MLKAMIKRALNVKEEKVLLKKTIQCLDQKDAASKSRGNLIEDEALEWLKPRALIKPDDQEDVPEADLDEEVGRVLTTINPNWVADEVAYHYGLGRFVAKPKPTFGKAYPLYIYQGTAIRKDSEEAKAQIAAGYGMVGFDDAGPKRAKVKKSAAEEEEEEEPEPEPQPPEEAKAEEDAVADEEKPSEAVEGPHEPEPVADDLEATAGDVGEEPEGDEKDESKDTGEEVLEIKPRVKKLANQFNFCERAALTYNFPRRSVDTQTIPPPRANYGSTALQCIIFDYYQEDYARKQREKEEDKPKRLRKKTAKHVKSAQQIHDEQLAQRIREAWTILERLVNQNIYDDIAQDYRYWDDPSDEFREGMGSLLPLWRFQFEPMRSHAVCDVQWNPHYQDLFAVAYGSLDFTSQQKTGCLCLYSIKNPAYPEYAVVTDSPVICLDVYKETPYLICVGLYDGNVCVYNAQLTLESSYQYKSDSVRDKHSNIVWEVRWGARLIDGESTFFSISGDGRVVQWAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHVLKLSPNLRVMCKPPKKAQGVDQRTLQIMKLDKLLSLVRDPPYQTGVVDEKFDDD

Uniprot

H9IXF9   A0A3S2M920   A0A212EX63   A0A194QVU2   A0A336KL89   A0A158NVB0   + More
A0A336MGH5   B4KRH6   A0A195BS71   B4LQ67   B4J8X6   A0A1B0CKZ9   A0A0L0BZX2   N6T5F6   A0A1J1I815   B4N627   B4P9K5   A0A0J9RHH3   A0A0J9RHL3   A0A0Q5VXF0   B3NK14   B4QFJ6   A0A1W4XBB9   K7INL1   A0A232EU48   A0A1B0D676   A0A3M6TUP4   E0W2G6   A0A2B4STJ4   V9KGR2   A0A093NRK9  

Pubmed

19121390    22118469    26354079    21347285    17994087    18057021    + More
26108605    23537049    17550304    22936249    20075255    28648823    30382153    20566863    24402279   

EMBL

BABH01018099    RSAL01000010    RVE53742.1    AGBW02011831    OWR46061.1    KQ461073    + More
KPJ09592.1    UFQS01000447    UFQT01000447    SSX04055.1    SSX24420.1    ADTU01027053    UFQT01001127    SSX29050.1    CH933808    EDW10402.2    KQ976417    KYM89877.1    CH940648    EDW61352.2    CH916367    CH917887    EDW01325.1    EDW04805.1    AJWK01016818    JRES01001096    KNC25600.1    APGK01043341    KB741014    KB632381    ENN75429.1    ERL94156.1    CVRI01000044    CRK96455.1    CH964154    EDW79816.1    CM000158    EDW91325.2    CM002911    KMY95371.1    KMY95372.1    CH954179    KQS62238.1    EDV55380.2    CM000362    EDX07988.1    NNAY01002170    OXU21878.1    AJVK01025814    AJVK01025815    AJVK01025816    RCHS01002902    RMX45061.1    DS235878    EEB19822.1    LSMT01000031    PFX31807.1    JW864512    AFO97029.1    KL224696    KFW62782.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053240    UP000005205    UP000009192    + More
UP000078540    UP000008792    UP000001070    UP000092461    UP000037069    UP000019118    UP000030742    UP000183832    UP000007798    UP000002282    UP000008711    UP000000304    UP000192223    UP000002358    UP000215335    UP000092462    UP000275408    UP000009046    UP000225706    UP000054081   

PRIDE

H9IXF9   

Pfam

PF00400   WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9IXF9   A0A3S2M920   A0A212EX63   A0A194QVU2   A0A336KL89   A0A158NVB0   + More
A0A336MGH5   B4KRH6   A0A195BS71   B4LQ67   B4J8X6   A0A1B0CKZ9   A0A0L0BZX2   N6T5F6   A0A1J1I815   B4N627   B4P9K5   A0A0J9RHH3   A0A0J9RHL3   A0A0Q5VXF0   B3NK14   B4QFJ6   A0A1W4XBB9   K7INL1   A0A232EU48   A0A1B0D676   A0A3M6TUP4   E0W2G6   A0A2B4STJ4   V9KGR2   A0A093NRK9  

PDB

6F3A     E-value=5.95392e-15,     Score=200

KEGG

101745308    K10409 dynein intermediate chain 1, axonemal | (RefSeq) dynein intermediate chain 2, ciliary

GO

GO:0007605   GO:0005515   GO:0016887   GO:0030170   GO:0006567   GO:0008890   GO:0008152   GO:0016740   GO:0003707   GO:0006418   GO:0003824  

Length:

758

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00467

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00015

outside

1  -  758

 

 

Pi

167.546459

Theta

164.14196

Tajima's D

-0.573479

CLR

0.022751

CSRT

0.227888605569722

Interpretation

Uncertain