Gene

KWMTBOMO11404

Pre Gene Modal

BGIBMGA001872

Annotation

PREDICTED:_putative_ribosome-binding_factor_A?_mitochondrial_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr19(+):4785766-4792612      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.801

CDS

ATGGTTAATCCGAAACCAAAAAAGCACTGGTATGCACCTTCAATGTTAGAATTCAACAAAATGCCCTCTGTGAAATCTTTAACAAAAGTTACCCATGAACCCGGCAAGCGTGGAATACGCCGAGTGGCGATGCTGAACAAGATGTTTATGAAACACATTACTGATCTGATGTCCACAGGAACGGTTTCAATGGATATTATCGGACGAGGGATTGAAATATCAAAAGTGAATGTAACATCTGATTTTCAAACTGTACATGTTTATTGGATATGCAAAGGTACCTCGACAGATGAAGAGACGGAAGCCACATTGAACTCTGTTGCAGGAGCTCTGAGGCATGAGCTGTCTGTGCTCAGGATCATGGGCCAGGTTCCTTATATTGTCTTTGTTAAAGATATGCATGAAGCCCGGATATTAGATCTCGATAATAGATTGCTCAAAGCTGATTTTGGAGAAAACTACACACCAACTGATCCAGGGCATTTACTTAAGACAGAATTCACACTAGACACCAAAATATCTCCTGACATCAAGGCCAAAATACGGCAGTTAGAAATAGACGAACCAAGTCAAGAGAGTCCAATACCAGAAATGACTCACACGATCTACGGCTTAGACCACGCCAAGATAATGAACAGACTCTTAACTGCTAGGAAGAAAAGTAAAGACGCTTGGAGTAATCTTGAATCAGAATCGCCAGTTATATCTTACAGAATACATGAAAGCACACCTATCAAAGTCGATACTGTCACCCAAAATAAGGAATTGGCTGAGTTTTTACTTAAAAGACAGATACTACAAAATAAATTGGCCAAGCAGTTACGGAAAACAAGCGACGACTGGCAGTTGTCGGACGATAGCGGATCCAATTCCGACGAGGAGTACATTGATGATACCTACTACGAAGACGAGGAGTATTATTACGATGATATAGAAGAAAATAAGAAAAAATTTGCCAAAGAATAA

Protein

MVNPKPKKHWYAPSMLEFNKMPSVKSLTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFGENYTPTDPGHLLKTEFTLDTKISPDIKAKIRQLEIDEPSQESPIPEMTHTIYGLDHAKIMNRLLTARKKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQLSDDSGSNSDEEYIDDTYYEDEEYYYDDIEENKKKFAKE

Uniprot

H9IX89   A0A194QKJ2   A0A0N1I8H5   A0A2A4K9Q5   A0A2H1W1J9   A0A212FLR8   + More
A0A2J7PJ95   A0A2J7PJ79   J9JY97   A0A1J1IIC7   A0A2H8TSM7   A0A182GP75   D6WR11   B0WY21   A0A1B0CXC2   Q16IL9   A0A2S2PV88   A0A1W4WYI0   A0A1B0EZK3   U4UEQ8   N6U904   K7J115   A0A1Y1JX99   A0A0K8TSD0   A0A1B6C1M9   A0A3Q0IIN9   A0A182IY11   A0A1I8MY57   B4NEP5   A0A0M4EYA8   A0A182RNQ2   T1PAQ8   A0A0C9REP4   A0A1I8Q5S1   A0A1A9VSZ3   A0A232F5K6   A0A1B0G9T9   A0A084VRD0   A0A1Y1JU48   A0A1B6KVE5   A0A0L0C524   B4L8U1   A0A2L2Y635   A0A1A9YM76   A0A1B6FTU9   A0A034WGL4   A0A1B0A1V0   D3TR07   A0A0K8U891   A0A1B0BII4   A0A1A9W1Z3   W8C0D0   Q8SXX0   B4PX89   B3NXH9   A0A0L7QQH4   E1ZYV8   A0A310SIF7   A0A151XCA9   B4JNV4   B3M5F7   A0A195F2B4   A0A158NFT7  

Pubmed

19121390    26354079    22118469    26483478    18362917    19820115    + More
17510324    23537049    20075255    28004739    26369729    25315136    17994087    28648823    24438588    26108605    26561354    25348373    20353571    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    20798317    21347285   

EMBL

BABH01018123    KQ459053    KPJ03976.1    KQ460772    KPJ12465.1    NWSH01000016    + More
PCG80809.1    ODYU01005757    SOQ46938.1    AGBW02007717    OWR54682.1    NEVH01024950    PNF16398.1    PNF16397.1    ABLF02020222    CVRI01000047    CRK98209.1    GFXV01005429    MBW17234.1    JXUM01077850    KQ563030    KXJ74613.1    KQ971351    EFA06539.1    DS232179    EDS36831.1    AJWK01033526    CH478071    EAT34112.1    GGMS01000100    MBY69303.1    AJVK01017265    AJVK01017266    AJVK01017267    KB632326    ERL92454.1    APGK01035089    KB740923    ENN78170.1    GEZM01100620    JAV52841.1    GDAI01000557    JAI17046.1    GEDC01029900    JAS07398.1    CH964239    EDW82214.1    CP012528    ALC48942.1    KA644998    AFP59627.1    GBYB01015074    JAG84841.1    NNAY01000922    OXU25892.1    CCAG010011658    ATLV01015606    KE525023    KFB40524.1    GEZM01100622    JAV52839.1    GEBQ01024582    JAT15395.1    JRES01000981    KNC26539.1    CH933815    EDW08066.1    IAAA01017217    IAAA01017218    LAA03624.1    GECZ01016113    JAS53656.1    GAKP01005113    JAC53839.1    EZ423859    ADD20135.1    GDHF01029739    JAI22575.1    JXJN01014969    GAMC01004082    JAC02474.1    AE014298    AY075537    AAF48535.2    AAL68344.1    CM000162    EDX01852.2    CH954180    EDV46938.2    KQ414786    KOC60868.1    GL435242    EFN73648.1    KQ765605    OAD53859.1    KQ982314    KYQ57979.1    CH916371    EDV92397.1    CH902618    EDV39567.2    KQ981864    KYN34317.1    ADTU01014727   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000007151    UP000235965    + More
UP000007819    UP000183832    UP000069940    UP000249989    UP000007266    UP000002320    UP000092461    UP000008820    UP000192223    UP000092462    UP000030742    UP000019118    UP000002358    UP000079169    UP000075880    UP000095301    UP000007798    UP000092553    UP000075900    UP000095300    UP000078200    UP000215335    UP000092444    UP000030765    UP000037069    UP000009192    UP000092443    UP000092445    UP000092460    UP000091820    UP000000803    UP000002282    UP000008711    UP000053825    UP000000311    UP000075809    UP000001070    UP000007801    UP000078541    UP000005205   

PRIDE

H9IX89    Q8SXX0   

Pfam

PF02033   RBFA        + More
PF01858   RB_A
PF11934   DUF3452
PF01857   RB_B

Interpro

IPR015946   KH_dom-like_a/b        + More
IPR000238   RbfA       
IPR023799   RbfA_dom_sf       
IPR039212   RBFA_mitochondrial       
IPR002720   RB_A       
IPR028309   RB_fam       
IPR028310   RBL1       
IPR024599   RB_N       
IPR036915   Cyclin-like_sf       
IPR002719   RB_B       

SUPFAM

SSF89919   SSF89919        + More
SSF47954   SSF47954       

Gene 3D

3.30.300.20    

ProteinModelPortal

H9IX89   A0A194QKJ2   A0A0N1I8H5   A0A2A4K9Q5   A0A2H1W1J9   A0A212FLR8   + More
A0A2J7PJ95   A0A2J7PJ79   J9JY97   A0A1J1IIC7   A0A2H8TSM7   A0A182GP75   D6WR11   B0WY21   A0A1B0CXC2   Q16IL9   A0A2S2PV88   A0A1W4WYI0   A0A1B0EZK3   U4UEQ8   N6U904   K7J115   A0A1Y1JX99   A0A0K8TSD0   A0A1B6C1M9   A0A3Q0IIN9   A0A182IY11   A0A1I8MY57   B4NEP5   A0A0M4EYA8   A0A182RNQ2   T1PAQ8   A0A0C9REP4   A0A1I8Q5S1   A0A1A9VSZ3   A0A232F5K6   A0A1B0G9T9   A0A084VRD0   A0A1Y1JU48   A0A1B6KVE5   A0A0L0C524   B4L8U1   A0A2L2Y635   A0A1A9YM76   A0A1B6FTU9   A0A034WGL4   A0A1B0A1V0   D3TR07   A0A0K8U891   A0A1B0BII4   A0A1A9W1Z3   W8C0D0   Q8SXX0   B4PX89   B3NXH9   A0A0L7QQH4   E1ZYV8   A0A310SIF7   A0A151XCA9   B4JNV4   B3M5F7   A0A195F2B4   A0A158NFT7  

PDB

2E7G     E-value=2.47508e-11,     Score=165

KEGG

101736638    no KO assigned | (RefSeq) putative ribosome-binding factor A, mitochondrial

GO

GO:0006364   GO:0051726   GO:0005634   GO:0006357   GO:0006313   GO:0007018   GO:0030286   GO:0046034   GO:0032559   GO:0004812   GO:0006418   GO:0003824  

PANTHER

PTHR14725   PTHR13742:SF20   PTHR13742  

Length:

321

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03264

Exp number, first 60 AAs:

0.01718

Total prob of N-in:

0.06542

outside

1  -  321

 

 

Pi

186.699525

Theta

24.908477

Tajima's D

0.360449

CLR

0.449304

CSRT

0.479826008699565

Interpretation

Uncertain