Gene

KWMTBOMO11402

Pre Gene Modal

BGIBMGA001871

Annotation

PREDICTED:_SAGA-associated_factor_29_homolog_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr19(+):4764006-4767677      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.029 Mitochondrial   Reliability : 1.624 Nuclear   Reliability : 1.174

CDS

ATGCCTCTCACAGCTGACGTTGCTGCACAACAAGTACAGGAAAGATTGAGGTCATTACACAGATTGATTTATGATATAGAAGCGGAGAGGTCTCGCAATGAACAGTGCATAGATGCCATACTTAGAGCTGAAAAATCTACAGGATCTCCTTCGAGTGCTGATGATTCATCAGGATCTTCCCAACAAGTTTCGCAGCTTAAAAGTTTATATAAATCGGGCTTAACAGCTGCCGAACAAGAGGAAAGACTACTTAGAGCTGCACTGTCAAGGATTTACGAAATACGTGCAATTAAAAATGAACGTCGAATTCAGGCTCGTCACGCGGGTAACAAGGAGACGATCGGTTGCGGGGCGCTGATGAAGCTGCTCCTGAGTGCCGCGCAAACGTTGCCGCTGCACGTGGGGCGCGCGGGGGAGCGGGCGCCGCCGCTGTGCGGAGCGGTGCCGGCCGACGCGGGGCACGTCGCTCGACCCGGGGACGCCGTCGCCGCGCTCGTGCGGGTCTCCGATAACGAGGACAACTGGATATTGGCCGAGGTGGTGAGCTGGTTGCCCGCTCAGGGGAAATACGAAGTGGACGACATCGACGAGGAGCAGAAGAATCGTCACGTGCTGAGCAAGCGCCGCGTCGTGCCGCTGCCGCTGATGCGAGCCGACCCTCGGACCGACGAACACGCTCTCTTCCCTAAAGGGCAGTAA

Protein

MPLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDAILRAEKSTGSPSSADDSSGSSQQVSQLKSLYKSGLTAAEQEERLLRAALSRIYEIRAIKNERRIQARHAGNKETIGCGALMKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVRVSDNEDNWILAEVVSWLPAQGKYEVDDIDEEQKNRHVLSKRRVVPLPLMRADPRTDEHALFPKGQ

Uniprot

A0A194QEL4   A0A3S2P1B1   A0A0N1IF64   A0A2H1WRL7   A0A212EUH5   A0A2A4K9B2   + More
H9IX88   A0A1B0DFB8   A0A1B0CVB9   A0A067QXF8   A0A0K8TL66   A0A1L8DX25   A0A2A3ESC7   A0A088A5K9   A0A232FA38   A0A182LBB5   Q7PQ24   A0A182HP75   Q16IF7   A0A182TKQ2   A0A154P8S1   A0A2J7PT46   A0A0L7R9J7   K7IR13   A0A182VBF6   A0A182GM64   E0VAG4   A0A195EJH7   A0A023EML2   A0A182JTN0   A0A182FCG1   A0A182WAA1   A0A182RTN5   U5ET93   E1ZY36   A0A2M4CN35   A0A195BEN3   A0A158NQT1   A0A182QPX8   T1PHJ8   B4KSJ5   A0A195FEC6   A0A026W745   A0A1I8N348   A0A182N816   A0A151WSF2   W5JVB0   A0A1Q3F8I3   A0A195CBF7   B4J7I1   D3TKV7   A0A1B6CIQ2   A0A1B0ACF3   B0WCB0   A0A182XJ87   A0A1A9UY52   A0A182JJ11   Q9W2I4   A0A336KFT2   A0A0L0C730   E9FTA9   B4LMG2   F4WI07   A0A0P5WZC7   A0A182MLN5   A0A0T6ATP2   B4I7N4   B4QG11   A0A1A9Y0F8   A0A1B0B662   A0A0P5XHA4   A0A0P4VS55   A0A0P5BD41   A0A1W4UAU8   A0A1I8Q9S7   A0A0K8V9L5   A0A034V8U9   A0A182YFL0   A0A023F0S9   A0A224XUZ8   T1GGY6   E9IPT0   A0A182PHC9   A0A0P6AI86   B4P9E3   B3NJL7   A0A0P5BBS0   A0A0V0G898   A0A0P5B5V3   A0A3B0J2U6   B3MBW6   Q291V3   A0A0M8ZYQ9   A0A1B0FQG4   A0A2P8YAR6   A0A0M4ECW6   A0A0A1X8Q0   A0A084W9L2   W8BBI2   A0A1A9WS62  

Pubmed

26354079    22118469    19121390    24845553    26369729    28648823    + More
20966253    12364791    14747013    17210077    17510324    20075255    26483478    20566863    24945155    20798317    21347285    17994087    24508170    30249741    25315136    20920257    23761445    20353571    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    21292972    21719571    22936249    27129103    25348373    25244985    25474469    21282665    17550304    15632085    29403074    25830018    24438588    24495485   

EMBL

KQ459053    KPJ03978.1    RSAL01000004    RVE54537.1    KQ460772    KPJ12463.1    + More
ODYU01010530    SOQ55703.1    AGBW02012379    OWR45150.1    NWSH01000016    PCG80811.1    BABH01018123    BABH01018124    AJVK01035194    AJVK01058655    AJWK01030406    KK853244    KDR09432.1    GDAI01002702    JAI14901.1    GFDF01003077    JAV11007.1    KZ288189    PBC34607.1    NNAY01000622    OXU27340.1    AAAB01008900    EAA09403.5    APCN01002922    CH478080    CH477632    CH477581    EAT34052.1    EAT38054.1    EAT38684.1    KQ434827    KZC07530.1    NEVH01021921    PNF19495.1    KQ414626    KOC67504.1    JXUM01073894    KQ562799    KXJ75106.1    DS235006    EEB10370.1    KQ978822    KYN28067.1    GAPW01003020    JAC10578.1    GANO01002030    JAB57841.1    GL435171    EFN73885.1    GGFL01002515    MBW66693.1    KQ976500    KYM83051.1    ADTU01023495    AXCN02000912    KA648297    AFP62926.1    CH933808    EDW09500.1    KQ981636    KYN38731.1    KK107372    QOIP01000004    EZA51808.1    RLU23197.1    KQ982773    KYQ50800.1    ADMH02000391    ETN66734.1    GFDL01011222    JAV23823.1    KQ978068    KYM97448.1    CH916367    EDW01105.1    EZ422044    ADD18467.1    GEDC01024075    GEDC01001155    JAS13223.1    JAS36143.1    DS231886    EDS43355.1    AE013599    BT030796    AAF46707.2    ABV82178.1    AHN56468.1    UFQS01000264    UFQT01000264    SSX02195.1    SSX22572.1    JRES01000827    KNC28046.1    GL732524    EFX89337.1    CH940648    EDW62057.1    GL888170    EGI66158.1    GDIQ01245554    GDIQ01186918    GDIP01079410    LRGB01003123    JAK06171.1    JAM24305.1    KZS04259.1    AXCM01000363    LJIG01022878    KRT78267.1    CH480824    EDW56609.1    CM000362    CM002911    EDX08047.1    KMY95499.1    JXJN01008987    GDIP01072115    JAM31600.1    GDKW01001183    JAI55412.1    GDIP01186202    JAJ37200.1    GDHF01016660    JAI35654.1    GAKP01020777    GAKP01020772    JAC38175.1    GBBI01004123    JAC14589.1    GFTR01004617    JAW11809.1    CAQQ02392450    GL764626    EFZ17401.1    GDIP01029011    JAM74704.1    CM000158    EDW91263.1    CH954179    EDV55440.1    GDIP01191995    JAJ31407.1    GECL01001769    JAP04355.1    GDIP01189650    JAJ33752.1    OUUW01000001    SPP73473.1    CH902619    EDV36137.1    CM000071    EAL25009.1    KQ435794    KOX73830.1    CCAG010009452    PYGN01000749    PSN41350.1    CP012524    ALC41665.1    GBXI01006795    JAD07497.1    ATLV01021831    KE525324    KFB46906.1    GAMC01019341    JAB87214.1   

Proteomes

UP000053268    UP000283053    UP000053240    UP000007151    UP000218220    UP000005204    + More
UP000092462    UP000092461    UP000027135    UP000242457    UP000005203    UP000215335    UP000075882    UP000007062    UP000075840    UP000008820    UP000075902    UP000076502    UP000235965    UP000053825    UP000002358    UP000075903    UP000069940    UP000249989    UP000009046    UP000078492    UP000075881    UP000069272    UP000075920    UP000075900    UP000000311    UP000078540    UP000005205    UP000075886    UP000009192    UP000078541    UP000053097    UP000279307    UP000095301    UP000075884    UP000075809    UP000000673    UP000078542    UP000001070    UP000092445    UP000002320    UP000076407    UP000078200    UP000075880    UP000000803    UP000037069    UP000000305    UP000008792    UP000007755    UP000076858    UP000075883    UP000001292    UP000000304    UP000092443    UP000092460    UP000192221    UP000095300    UP000076408    UP000015102    UP000075885    UP000002282    UP000008711    UP000268350    UP000007801    UP000001819    UP000053105    UP000092444    UP000245037    UP000092553    UP000030765    UP000091820   

PRIDE

H9IX88    Q9W2I4   

Pfam

PF07039   DUF1325

Interpro

IPR037802   SGF29        + More
IPR010750   SGF29_tudor-like_dom       

ProteinModelPortal

A0A194QEL4   A0A3S2P1B1   A0A0N1IF64   A0A2H1WRL7   A0A212EUH5   A0A2A4K9B2   + More
H9IX88   A0A1B0DFB8   A0A1B0CVB9   A0A067QXF8   A0A0K8TL66   A0A1L8DX25   A0A2A3ESC7   A0A088A5K9   A0A232FA38   A0A182LBB5   Q7PQ24   A0A182HP75   Q16IF7   A0A182TKQ2   A0A154P8S1   A0A2J7PT46   A0A0L7R9J7   K7IR13   A0A182VBF6   A0A182GM64   E0VAG4   A0A195EJH7   A0A023EML2   A0A182JTN0   A0A182FCG1   A0A182WAA1   A0A182RTN5   U5ET93   E1ZY36   A0A2M4CN35   A0A195BEN3   A0A158NQT1   A0A182QPX8   T1PHJ8   B4KSJ5   A0A195FEC6   A0A026W745   A0A1I8N348   A0A182N816   A0A151WSF2   W5JVB0   A0A1Q3F8I3   A0A195CBF7   B4J7I1   D3TKV7   A0A1B6CIQ2   A0A1B0ACF3   B0WCB0   A0A182XJ87   A0A1A9UY52   A0A182JJ11   Q9W2I4   A0A336KFT2   A0A0L0C730   E9FTA9   B4LMG2   F4WI07   A0A0P5WZC7   A0A182MLN5   A0A0T6ATP2   B4I7N4   B4QG11   A0A1A9Y0F8   A0A1B0B662   A0A0P5XHA4   A0A0P4VS55   A0A0P5BD41   A0A1W4UAU8   A0A1I8Q9S7   A0A0K8V9L5   A0A034V8U9   A0A182YFL0   A0A023F0S9   A0A224XUZ8   T1GGY6   E9IPT0   A0A182PHC9   A0A0P6AI86   B4P9E3   B3NJL7   A0A0P5BBS0   A0A0V0G898   A0A0P5B5V3   A0A3B0J2U6   B3MBW6   Q291V3   A0A0M8ZYQ9   A0A1B0FQG4   A0A2P8YAR6   A0A0M4ECW6   A0A0A1X8Q0   A0A084W9L2   W8BBI2   A0A1A9WS62  

PDB

5C0M     E-value=1.46008e-33,     Score=354

KEGG

101736998    K11364 SAGA-associated factor 29 | (RefSeq) SAGA-associated factor 29 homolog

GO

GO:0000124   GO:0016740   GO:0001135   GO:0005671   GO:0043966   GO:0035064   GO:0005634   GO:0004402   GO:0016573   GO:0070775   GO:0006338   GO:0016021  

PANTHER

PTHR21539  

Length:

232

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02134

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04648

outside

1  -  232

 

 

Pi

198.029457

Theta

151.092482

Tajima's D

0.879492

CLR

0.047146

CSRT

0.626418679066047

Interpretation

Uncertain