Gene

KWMTBOMO11401  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001950

Annotation

PREDICTED:_polyadenylate_binding_protein_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr19(-):4752567-4760505      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.929

CDS

ATGGCAGAAAATGATGATTTTTTAGACTCGATTGACAACAATCATTTGGAAGGAACTAACGGCTCAATGAATATGACTGACAATAGTCTCGGAGGCGGAGATGAAGCGGCCGGCGGAGAAGCTCCTGACCTTGCAGCTATCAAGGCCCGAGTGCGGGAGATGGAAGAAGAAGCTGAGAAACTGAAACAAATGCAGACTGAAGTTGACAAGCAAATGAGTATGGGAAGCCCACCAGGACTAACCAGTCCATTAAACATGTCTATCGAAGAAAAAATAGAAGCAGACAATAGATCAGTATATGTTGGTAATGTTGATTATGGAGCCACGGCTGAGGAGCTGGAGCAGCACTTTCATGGTTGTGGATCTATTAACAGGGTTACAATATTATGCAATAAGTATGATGGCCACCCAAAAGGTTTTGCCTACATCGAATTTGGCGACAAGGATAGTGTCCAGACTGCAATGGCTATGGATGAATCATTATTTAGAGGAAGGCAAATAAAGGTGATGCCGAAGCGTACGAACAAGCCGGGTCTGTCGTCTACGAACCGCCCGCCGCGCACGATGCGCGGGCGCGGGCGCGGCTACCGCGGCGGCCTCGCGCCTTACTACACGGGCTTCCGGCCCCCGCGACGCGGCAGAGTCTTCAAGCGCGGCTCGTACTACTCCCCGTACTGA

Protein

MAENDDFLDSIDNNHLEGTNGSMNMTDNSLGGGDEAAGGEAPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPPRTMRGRGRGYRGGLAPYYTGFRPPRRGRVFKRGSYYSPY

Uniprot

Q0ZAL2   A0A0N0PC56   A0A3S2LIF7   A0A2A4KAX8   I4DRD6   I4DKS0   + More
A0A212EUL3   A0A194QEY6   S4PB04   H9IXG7   A0A2H1VGH8   A0A1W4WYD2   A0A1Y1LEM5   D6WR37   J3JW69   A0A1Y1LEJ1   A0A1B6EB13   A0A0L7R948   A0A026W8N4   E2AU35   A0A2A3EJC1   V9IJU3   A0A087ZZC6   F4WGU3   A0A151JUW6   A0A158NFG4   A0A0J7NW30   A0A1B6LN98   A0A1B6HV38   A0A1B6FNI8   A0A232F094   A0A0P4WCG7   E0VAG5   A0A3Q0IR86   A0A0V0G5F6   A0A023F9K9   A0A069DPF5   A0A0P4VTH3   R4FLS7   A0A224XY24   R4WRH0   A0A170VQN7   A0A0B7AXY8   A0A1L8DH27   G1P0Z9   A0A1L8DH72   A0A0P5WSI9   A0A3S1BJ78   A0A0P5FLT9   A0A0K2ULU7   A0A0P5BTJ8   A0A0P4YRM3   A0A0P4Y821   A0A0P5K4N8   A0A0P5BMM0   A0A0K2UKQ9   A0A1J1IT08  

Pubmed

26354079    22651552    22118469    23622113    19121390    28004739    + More
18362917    19820115    22516182    24508170    30249741    20798317    21719571    21347285    28648823    20566863    25474469    26334808    27129103    23691247    21993624   

EMBL

DQ648527    ABG43002.1    KQ460772    KPJ12462.1    RSAL01000004    RVE54538.1    + More
NWSH01000016    PCG80812.1    AK405074    BAM20476.1    AK401888    BAM18510.1    AGBW02012379    OWR45151.1    KQ459053    KPJ03979.1    GAIX01006192    JAA86368.1    BABH01018125    ODYU01002448    SOQ39945.1    GEZM01057951    JAV72073.1    KQ971354    EFA07014.1    BT127487    AEE62449.1    GEZM01057952    JAV72072.1    GEDC01026325    GEDC01011050    GEDC01010950    GEDC01002195    JAS10973.1    JAS26248.1    JAS26348.1    JAS35103.1    KQ414627    KOC67395.1    KK111565    KK107361    QOIP01000005    EZA46355.1    EZA52001.1    RLU22940.1    GL442767    EFN63078.1    KZ288230    PBC31574.1    JR051050    AEY61413.1    GL888147    EGI66562.1    KQ981724    KYN37243.1    ADTU01014477    ADTU01014478    LBMM01001284    KMQ96580.1    GEBQ01014756    JAT25221.1    GECU01029169    GECU01019377    JAS78537.1    JAS88329.1    GECZ01018001    JAS51768.1    NNAY01001451    OXU23937.1    GDRN01052400    JAI66306.1    DS235006    EEB10371.1    GECL01002810    JAP03314.1    GBBI01000550    JAC18162.1    GBGD01002956    JAC85933.1    GDKW01002354    JAI54241.1    ACPB03000375    GAHY01002009    JAA75501.1    GFTR01003447    JAW12979.1    AK417282    BAN20497.1    GEMB01006477    JAR96866.1    HACG01037910    CEK84775.1    GFDF01008325    JAV05759.1    AAPE02039917    GFDF01008390    JAV05694.1    GDIP01082213    JAM21502.1    RQTK01000184    RUS85043.1    GDIQ01253615    JAJ98109.1    HACA01021310    CDW38671.1    GDIP01180692    JAJ42710.1    GDIP01223597    JAI99804.1    GDIP01233500    JAI89901.1    GDIQ01190980    JAK60745.1    GDIP01182399    JAJ41003.1    HACA01021309    CDW38670.1    CVRI01000059    CRL03379.1   

Proteomes

UP000053240    UP000283053    UP000218220    UP000007151    UP000053268    UP000005204    + More
UP000192223    UP000007266    UP000053825    UP000053097    UP000279307    UP000000311    UP000242457    UP000005203    UP000007755    UP000078541    UP000005205    UP000036403    UP000215335    UP000009046    UP000079169    UP000015103    UP000001074    UP000271974    UP000183832   

PRIDE

Q0ZAL2    H9IXG7   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR034911   PABP2       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

Q0ZAL2   A0A0N0PC56   A0A3S2LIF7   A0A2A4KAX8   I4DRD6   I4DKS0   + More
A0A212EUL3   A0A194QEY6   S4PB04   H9IXG7   A0A2H1VGH8   A0A1W4WYD2   A0A1Y1LEM5   D6WR37   J3JW69   A0A1Y1LEJ1   A0A1B6EB13   A0A0L7R948   A0A026W8N4   E2AU35   A0A2A3EJC1   V9IJU3   A0A087ZZC6   F4WGU3   A0A151JUW6   A0A158NFG4   A0A0J7NW30   A0A1B6LN98   A0A1B6HV38   A0A1B6FNI8   A0A232F094   A0A0P4WCG7   E0VAG5   A0A3Q0IR86   A0A0V0G5F6   A0A023F9K9   A0A069DPF5   A0A0P4VTH3   R4FLS7   A0A224XY24   R4WRH0   A0A170VQN7   A0A0B7AXY8   A0A1L8DH27   G1P0Z9   A0A1L8DH72   A0A0P5WSI9   A0A3S1BJ78   A0A0P5FLT9   A0A0K2ULU7   A0A0P5BTJ8   A0A0P4YRM3   A0A0P4Y821   A0A0P5K4N8   A0A0P5BMM0   A0A0K2UKQ9   A0A1J1IT08  

PDB

3B4M     E-value=7.48984e-40,     Score=408

KEGG

733078    K14396 polyadenylate-binding protein 2 | (RefSeq) Pabn1; polyadenylate binding protein 2

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:1904247   GO:0016021   GO:0043066   GO:0097718   GO:0097136   GO:0042802   GO:0046982   GO:0003676   GO:0000166   GO:0006313   GO:0007018   GO:0030286   GO:0046034   GO:0032559   GO:0004812   GO:0006418   GO:0003824  

PANTHER

PTHR23236:SF33  

Length:

225

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00134

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03540

outside

1  -  225

 

 

Pi

153.291223

Theta

143.34003

Tajima's D

0.297537

CLR

0.795967

CSRT

0.454377281135943

Interpretation

Uncertain