Silkworm Genome Informatics Database

Gene

KWMTBOMO11394 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001954

Annotation

PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_K-like_[Papilio_polytes]

Location

Bomo_Chr19(-):4655549-4675555 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.185

CDS

ATGAAACGGGACGCGTACGGTGACGACGGCCCTGCCCAGAAACGGCACCGGCAGACAGACGATGAAGTCACCTTCCTGATACCTAGCAAGGTGGCTGGGTCGATAATCGGAAAAGGTGGCAGCAATATATCAAAGCTCAGAAGCCAGTACAAAGCCTCTATAACAGTCCCAGATTGCCCCGGCCCCGAACGGGTACTCTCCATAACAGCTGAAGATGACGAAACGCTCGTGGAAATCATTAAAGATATCATGCCGTGCCTGGCAGAATTTCATAACCAGGGTGGATCCAGGATGGGCGATCAAGAGCTAGACGTTAGGATGCTGATTCATCAGAGCCGAGCCGGGTGCGTTATTGGGAAAGCTGGTTCGAAAATCAAAGAGTTACGTGAGAAAACCGGTGCGCGCCTGAAGATATTTTCGAACTCCGCGCCCCAGAGTTCGGAGCGCATCGTTCAGCTGATCGGGAAACCGGACTCGATCGTGTCCGGAGTGCGCGAGGTTCTGGACCTCGTCAGGCAGGTTCCAATAAAGGGTCCTATCCAAGCGTACGACCCTCACAACTATGATGATTTCTATGCGGAAGAGTATGGTGGCTTCGGAAATGGTCAAGGAAGCGGACCTTCTCGTAGCGGCAATGGGGGAATGCGAGGTCCGCCACGTGGTCCGCCCCGCGGCATCCCCCCCATGGGTCCCGCAGGACGTGGGCCTCCACCTCGCGGACCTCCTATGGGTCGGAGTGGACCCCCCGGTCCACGAGGCGGGTACAATGACTTCTCCGGTCCGGGTCCCCGTGGAAATTTCAACGGTCCTCCACGTGGTGGCTTCAGCGGGGGGAATTTTGGGGGTAACTTCAGCGGAGGTGGTCGAGGATCTGGTACAGGAGGTGGAAACTTCAACAATAACGGGGGTAACCAACAGGACACTTCGACGCAAGTTACCATACCTAAAGATTTGGCAGGCGCGATAATTGGTAAAGCTGGTTCCCGCATCCGCAAGATCCGAGCCGAGAGCGGCGCCGGGATAGAGATAGCCGAGCCGCTGCCGGGGTCCAATGACAGGATCATTACCATCACGGGCTCGCCCGGACGCATCCAGATGGCGCAGTACTTGTTACAGCAGAGTGTGCACGAGAGCAATCCGAACCTTGGACGCGGAAACTTCTGA

Protein

MKRDAYGDDGPAQKRHRQTDDEVTFLIPSKVAGSIIGKGGSNISKLRSQYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPQSSERIVQLIGKPDSIVSGVREVLDLVRQVPIKGPIQAYDPHNYDDFYAEEYGGFGNGQGSGPSRSGNGGMRGPPRGPPRGIPPMGPAGRGPPPRGPPMGRSGPPGPRGGYNDFSGPGPRGNFNGPPRGGFSGGNFGGNFSGGGRGSGTGGGNFNNNGGNQQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYLLQQSVHESNPNLGRGNF

Uniprot

NA

ProteinModelPortal

NA

PDB

1J5K E-value=1.3751e-18, Score=228

KEGG

101737557 K12886 heterogeneous nuclear ribonucleoprotein K | (RefSeq) heterogeneous nuclear ribonucleoprotein

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003676 GO:0003723 GO:0032259 GO:0016620 GO:0046034 GO:0032559 GO:0004812 GO:0006418 GO:0003824

Length:

387

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01567

Exp number, first 60 AAs:

0.01567

Total prob of N-in:

0.02389

outside

1 - 387

Pi

235.846213

Theta

197.065309

Tajima's D

0.653719

CLR

0.371945

CSRT

0.557722113894305

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	IFSNSAPQSSER	100.00	5e-08
28556443	IQMAQYLLQQSVHESNPNLGR	100.00	0.001
26822097	IEKIIK	100.00	0.006
26280517	ASISIITSHISK	100.00	0.006
28467696	ASISIITSHISK	100.00	0.006
28556443	IVQLIGKPDSIVSGVR	100.00	0.006

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics