Gene

KWMTBOMO11393  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001867

Annotation

PREDICTED:_lysM_and_putative_peptidoglycan-binding_domain-containing_protein_4_[Plutella_xylostella]

Location

Bomo_Chr19(+):4651656-4655054      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.141

CDS

ATGAAACAAAGAACTCGCGTCATGCATAGTGGAGACGATTTAATATCGTATGACGTGATGAACAATAAAAAAAACGACGACAACGGCCGCAGTGACATACAATTATACAAAATTAAGCCACAAGAACATTTTATTGAGGCGCAAGTTCAGGAAGGAGATACGCTACAAGCAATTGCCCTGAGGTTTTACTGTTCCATTGCAGAATTGAAAAGAATCAACCAAATCCACAAAGACAACGAGATTTTTGCAAGGAGAACAATTAAAGTCCCGGTTACACCTTACTCTGTCTTAACAGAGTTAATACCATCAGAGCAACCAGAGCCGACACCTTCAACCTCGAAACAAACGCCAAAATCGATACAGCAACTCTTACAAAGCAATGGCATACCGCAGTTACATCAAAGCAGTTTACCGCAAAAAGAGGAGAAAGACTATGCCATTGACTGCAATGCTGTTATTATGAACAGCACTTTAGCGTCTTCTGTTGCTCCTTATTCGGACGTAGAACCAGCAGAACAAGTCACAGAGGACACGCAATTGTTGCCAAACAAAGAAAAGATTCCTGTAGAAGCTATAGTTGTGAAAGAATTGACATCACATGGTGCTGATTTTGGACTGAAATGGTTTCATTTAGTATGCTTCATGCTATTACTAGTTGTGGTGATACCAGTAGTGTATATATTGTTTTATTTAGACAAGGAACATGATGAAATGGATGACCTACCACCCTTACATAGTACTTGA

Protein

MKQRTRVMHSGDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTELIPSEQPEPTPSTSKQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVEAIVVKELTSHGADFGLKWFHLVCFMLLLVVVIPVVYILFYLDKEHDEMDDLPPLHST

Uniprot

H9IX84   A0A2H1VI66   A0A2A4K930   A0A2A4K9Y3   A0A212EIE3   A0A437BBH1   + More
S4P1N1   I4DJG5   A0A194QGA6   A0A0N1PGA9   A0A0L7KZJ8   A0A232EWR9   W8C1Z4   A0A182H2H2   A0A182HE47   Q172P1   A0A1Y1LCA5   N6U7Q7   E2BUR0   A0A2P8YBS3   A0A026X1I9   F4WHW6   A0A2M4ARC7   E2A1V9   A0A088A5V2   A0A158NBY1   A0A195BES3   D6WRZ7   A0A093PPU4   A0A3P8W918   A0A3B4UE88   A0A3B4WHH9   A0A3M0KXZ9   A0A1V4JTS3   A0A2I0LZE6   A0A2U9BW10  

Pubmed

19121390    22118469    23622113    22651552    26354079    26227816    + More
28648823    24495485    26483478    17510324    28004739    23537049    20798317    29403074    24508170    30249741    21719571    21347285    18362917    19820115    24487278    23371554   

EMBL

BABH01018132    ODYU01002448    SOQ39954.1    NWSH01000016    PCG80785.1    PCG80786.1    + More
AGBW02014672    OWR41245.1    RSAL01000096    RVE47756.1    GAIX01012405    JAA80155.1    AK401433    BAM18055.1    KQ459053    KPJ03990.1    KQ460772    KPJ12455.1    JTDY01004108    KOB68590.1    NNAY01001825    OXU22799.1    GAMC01010816    JAB95739.1    JXUM01023899    KQ560674    KXJ81328.1    JXUM01035061    KQ561046    KXJ79903.1    CH477433    EAT41007.1    GEZM01063218    JAV69186.1    APGK01045490    KB741037    KB632085    ENN74607.1    ERL88637.1    GL450743    EFN80565.1    PYGN01000721    PSN41712.1    KK107036    QOIP01000004    EZA61958.1    RLU23534.1    GL888170    EGI66195.1    EGI66197.1    GGFK01009951    MBW43272.1    GL435806    EFN72598.1    ADTU01011477    KQ976500    KYM83091.1    KQ971351    EFA06411.1    KL670372    KFW78863.1    QRBI01000097    RMC18035.1    LSYS01006186    OPJ75598.1    AKCR02000058    PKK22801.1    CP026252    AWP08498.1    AWP08500.1    AWP08501.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053268    UP000053240    + More
UP000037510    UP000215335    UP000069940    UP000249989    UP000008820    UP000019118    UP000030742    UP000008237    UP000245037    UP000053097    UP000279307    UP000007755    UP000000311    UP000005203    UP000005205    UP000078540    UP000007266    UP000053258    UP000265120    UP000261420    UP000261360    UP000269221    UP000190648    UP000053872    UP000246464   

PRIDE

H9IX84   

Pfam

PF01476   LysM        + More
PF00640   PID

Interpro

IPR036779   LysM_dom_sf        + More
IPR018392   LysM_dom       
IPR006020   PTB/PI_dom       
IPR028761   Dab       
IPR011993   PH-like_dom_sf       

Gene 3D

3.10.350.10     2.30.29.30    

CDD

cd00118  LysM

ProteinModelPortal

H9IX84   A0A2H1VI66   A0A2A4K930   A0A2A4K9Y3   A0A212EIE3   A0A437BBH1   + More
S4P1N1   I4DJG5   A0A194QGA6   A0A0N1PGA9   A0A0L7KZJ8   A0A232EWR9   W8C1Z4   A0A182H2H2   A0A182HE47   Q172P1   A0A1Y1LCA5   N6U7Q7   E2BUR0   A0A2P8YBS3   A0A026X1I9   F4WHW6   A0A2M4ARC7   E2A1V9   A0A088A5V2   A0A158NBY1   A0A195BES3   D6WRZ7   A0A093PPU4   A0A3P8W918   A0A3B4UE88   A0A3B4WHH9   A0A3M0KXZ9   A0A1V4JTS3   A0A2I0LZE6   A0A2U9BW10  

PDB

2DJP     E-value=0.000205081,     Score=103

KEGG

101737795    no KO assigned | (RefSeq) lysM and putative peptidoglycan-binding domain-containing protein 3

GO

GO:0016021   GO:0032502  

PANTHER

PTHR11232:SF47  

Length:

247

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.80436

Exp number, first 60 AAs:

4e-05

Total prob of N-in:

0.92581

inside

1  -  207

TMhelix

208  -  230

outside

231  -  247

 

 

Pi

272.687356

Theta

187.522083

Tajima's D

1.462435

CLR

0.375305

CSRT

0.775611219439028

Interpretation

Uncertain