Gene

KWMTBOMO11389

Pre Gene Modal

BGIBMGA001864

Annotation

PREDICTED:_trimeric_intracellular_cation_channel_type_B_[Papilio_polytes]

Location

Bomo_Chr19(+):4572197-4581048      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.905

CDS

ATGGATCCTGAATCATTTTTAGACCTGGCCAATCAGGTCATAAAGTTGAAAATGTATCCATATTTCGACATAGCGCATTCGTTGCTGTGCGCTCTTGCAGTCAGAGAAGATTTGGGATCCGGTGCCCAGGCCTTTTCCAGGAAGCATCCACTGTCATGCTGGCTGTCCACTATGCTAGTGATATTCGCCGGCGGTATGGTAGCCAATGGTCTTCTAGGCGAACCCATTTTGGCGCCGTTGAAGAATACACCCCAATTAGTCATCGGAACTGTTACATGGTACTTAGTTTTCTACACGCCTTTCGATGTAGGCTACAAGGTAGCGAAGTTCCTACCGGTGAAGGTGGTGGCGGCTGCGATGAAAGAAATATACAGAGCCAAGAAAGTTTACGATGGAGTCAGCCACGCAGCCAAACTGTACCCGAACGCTTACGTCATTATGGTCATTGTTGGTACGTTGAAAGGTAACGGTGCCGGCTTCACGAAATTAGTCGAGAGGCTTATCCGGGGCGCTTGGACCCCGACTGCGATGGAAACCATGCAACCCAGCTTCTACACAAAGGCTTCGCTGGTAGCTTCCGTGATCTTCGTATTGGATAAGAAGACAGATTTGATCTCTGCTCCCCACGCACTCGTCTACTTCGGTATCGTTATCTTCTTTGTTTACTTTAAGCTCTCCTCCATACTTCTGGGCATCCACGATCCCTTCGTGCCATTTGAGAATCTGTTCTGCGCCTTATTCATGGGCGGCATTTGGGATTCGCTGGCCAAGTTGCTCGGCAAAGGACAACCCAAGGAGGAGACTAAGGACACCAAGAAAATCAACTAG

Protein

MDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVGYKVAKFLPVKVVAAAMKEIYRAKKVYDGVSHAAKLYPNAYVIMVIVGTLKGNGAGFTKLVERLIRGAWTPTAMETMQPSFYTKASLVASVIFVLDKKTDLISAPHALVYFGIVIFFVYFKLSSILLGIHDPFVPFENLFCALFMGGIWDSLAKLLGKGQPKEETKDTKKIN

Similarity

Belongs to the synaptobrevin family.

Uniprot

A0A2A4KA55   A0A194QF01   A0A2H1WNH3   I4DN83   A0A0N0PBX8   A0A1E1WN10   + More
A0A437BBF2   A0A1B0CWA4   A0A1L8DDN2   B0WYR2   Q1HRE2   A0A182G698   A0A1Q3G471   U5ESJ9   T1DN85   A0A2M3ZB48   A0A2M4BWT2   W5JKT8   A0A182FJK1   A0A2M4AX15   A0A084VVH8   A0A182JH44   A0A182YH80   A0A182PSV7   A0A182LU20   A0A182SYP8   A0A1Y9HB63   A0A182KD93   A0A182U8F4   A0A182W5N2   A0A182XJX9   A0NCG5   A0A182RHL7   A0A182IAV9   W8CA05   A0A0L0C3W2   A0A034WCS9   A0A2Y9D318   A0A0K8VWZ5   A0A034WA63   A0A182N8G9   T1PBK4   A0A023ELS4   A0A1I8PT06   B3N0S0   B4M1S4   A0A026WTP1   B4R5T6   B4IF71   Q9VXG9   B4PXS7   B4L8R6   A0A1W4VHD7   A0A3B0KQ72   B4H0Z9   A0A0M5J5W1   Q29GI6   B4JKM4   B3NX45   E2BL30   D6WU90   A0A232FGQ6   E2AIS7   B4NEV3   E0W2J7   E9J0B0   V5G537   J3JWM4   A0A0L7RC96   A0A1B6K1J0   A0A2A3E5L9   A0A087ZY47   A0A1Y1MJQ4   A0A154P8Q8   A0A158NPX4   A0A1A9VRF7   A0A336MRA2   A0A067QTZ9   A0A1A9XDX3   A0A151IVK9   A0A195BET1   A0A195FH63   A0A1B0DNP4   A0A151IDD0   A0A1B6F8I2   A0A0N0BE69   A0A2J7R9A1   A0A1B6L944   A0A1S3DH01   A0A0A9XH50   A0A0P4VY36   R4WIN7   A0A224XVJ8   A0A0V0GC56   A0A069DR86   A0A1Q3G4B7   A0A0C9S187   T1HGV4   A0A1B6DH47   A0A182KJH1  

Pubmed

26354079    22651552    17204158    17510324    26483478    20920257    + More
23761445    24438588    25244985    12364791    14747013    17210077    24495485    26108605    25348373    25315136    24945155    17994087    18057021    24508170    30249741    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    23185243    20798317    18362917    19820115    28648823    20566863    21282665    22516182    23537049    28004739    21347285    24845553    25401762    26823975    27129103    23691247    26334808    20966253   

EMBL

NWSH01000016    PCG80794.1    KQ459053    KPJ03994.1    ODYU01009504    SOQ53994.1    + More
AK402768    BAM19373.1    KQ460772    KPJ12451.1    GDQN01002680    JAT88374.1    RSAL01000096    RVE47750.1    AJWK01032126    GFDF01009536    JAV04548.1    DS232196    DS232309    EDS37172.1    EDS39565.1    DQ440152    CH477242    ABF18185.1    EAT46348.1    EAT46349.1    EAT46350.1    JXUM01007375    JXUM01007376    JXUM01007377    JXUM01007378    JXUM01044523    KQ561404    KXJ78691.1    GFDL01000440    JAV34605.1    GANO01003207    JAB56664.1    GAMD01003105    JAA98485.1    GGFM01004982    MBW25733.1    GGFJ01008250    MBW57391.1    ADMH02000803    GGFL01004300    ETN64982.1    MBW68478.1    GGFK01011931    MBW45252.1    ATLV01017184    KE525157    KFB41972.1    AXCP01004575    AXCM01004821    AXCN02002233    AAAB01008846    EAA45107.1    EGK96463.1    APCN01001348    GAMC01001694    JAC04862.1    JRES01000948    KNC26901.1    GAKP01007364    JAC51588.1    GDHF01008917    JAI43397.1    GAKP01007363    JAC51589.1    KA645353    AFP59982.1    GAPW01003380    JAC10218.1    CH902644    EDV34799.1    KPU75287.1    CH940651    EDW65628.1    KRF82314.1    KRF82315.1    KK107106    QOIP01000002    EZA59430.1    RLU25732.1    CM000366    EDX18086.1    CH480832    EDW46125.1    AE014298    AY060786    AAF48602.1    AAL28334.1    CM000162    EDX01913.1    KRK06439.1    CH933815    EDW08041.1    KRG07571.1    KRG07572.1    KRG07573.1    OUUW01000015    SPP88769.1    CH479201    EDW29915.1    CP012528    ALC48586.1    CH379064    EAL32123.1    KRT06947.1    KRT06948.1    KRT06949.1    CH916370    EDW00127.1    CH954180    EDV46874.1    KQS30218.1    KQS30219.1    KQS30220.1    GL448906    EFN83599.1    KQ971352    EFA06252.1    NNAY01000245    OXU29743.1    GL439874    EFN66666.1    CH964239    EDW82272.1    KRF99589.1    DS235878    EEB19853.1    GL767381    EFZ13739.1    GALX01003291    JAB65175.1    APGK01057806    BT127642    KB741282    KB631802    AEE62604.1    ENN70797.1    ERL86249.1    KQ414616    KOC68453.1    GECU01002401    JAT05306.1    KZ288369    PBC26774.1    GEZM01029765    JAV85941.1    KQ434829    KZC07744.1    ADTU01000325    ADTU01000326    ADTU01000327    UFQT01000175    UFQT01001969    SSX21146.1    SSX32235.1    KK852954    KDR13304.1    KQ980895    KYN11737.1    KQ976509    KYM82692.1    KQ981606    KYN39572.1    AJVK01007642    KQ977978    KYM98396.1    GECZ01023242    JAS46527.1    KQ435847    KOX71141.1    NEVH01006600    PNF37403.1    GEBQ01019812    JAT20165.1    GBHO01024285    GBRD01000271    GDHC01006090    JAG19319.1    JAG65550.1    JAQ12539.1    GDKW01001056    JAI55539.1    AK417315    BAN20530.1    GFTR01004407    JAW12019.1    GECL01000490    JAP05634.1    GBGD01002514    JAC86375.1    GFDL01000439    JAV34606.1    GBYB01014516    JAG84283.1    ACPB03000101    GEDC01012326    JAS24972.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000283053    UP000092461    UP000002320    + More
UP000008820    UP000069940    UP000249989    UP000000673    UP000069272    UP000030765    UP000075880    UP000076408    UP000075885    UP000075883    UP000075901    UP000075886    UP000075881    UP000075902    UP000075920    UP000076407    UP000007062    UP000075900    UP000075840    UP000037069    UP000075903    UP000075884    UP000095301    UP000095300    UP000007801    UP000008792    UP000053097    UP000279307    UP000000304    UP000001292    UP000000803    UP000002282    UP000009192    UP000192221    UP000268350    UP000008744    UP000092553    UP000001819    UP000001070    UP000008711    UP000008237    UP000007266    UP000215335    UP000000311    UP000007798    UP000009046    UP000019118    UP000030742    UP000053825    UP000242457    UP000005203    UP000076502    UP000005205    UP000078200    UP000027135    UP000092443    UP000078492    UP000078540    UP000078541    UP000092462    UP000078542    UP000053105    UP000235965    UP000079169    UP000015103    UP000075882   

PRIDE

Q9VXG9   

Pfam

PF05197   TRIC        + More
PF00957   Synaptobrevin
PF13774   Longin

Interpro

IPR007866   TRIC_channel        + More
IPR011012   Longin-like_dom_sf       
IPR001388   Synaptobrevin       
IPR010908   Longin_dom       

SUPFAM

SSF64356   SSF64356       

ProteinModelPortal

A0A2A4KA55   A0A194QF01   A0A2H1WNH3   I4DN83   A0A0N0PBX8   A0A1E1WN10   + More
A0A437BBF2   A0A1B0CWA4   A0A1L8DDN2   B0WYR2   Q1HRE2   A0A182G698   A0A1Q3G471   U5ESJ9   T1DN85   A0A2M3ZB48   A0A2M4BWT2   W5JKT8   A0A182FJK1   A0A2M4AX15   A0A084VVH8   A0A182JH44   A0A182YH80   A0A182PSV7   A0A182LU20   A0A182SYP8   A0A1Y9HB63   A0A182KD93   A0A182U8F4   A0A182W5N2   A0A182XJX9   A0NCG5   A0A182RHL7   A0A182IAV9   W8CA05   A0A0L0C3W2   A0A034WCS9   A0A2Y9D318   A0A0K8VWZ5   A0A034WA63   A0A182N8G9   T1PBK4   A0A023ELS4   A0A1I8PT06   B3N0S0   B4M1S4   A0A026WTP1   B4R5T6   B4IF71   Q9VXG9   B4PXS7   B4L8R6   A0A1W4VHD7   A0A3B0KQ72   B4H0Z9   A0A0M5J5W1   Q29GI6   B4JKM4   B3NX45   E2BL30   D6WU90   A0A232FGQ6   E2AIS7   B4NEV3   E0W2J7   E9J0B0   V5G537   J3JWM4   A0A0L7RC96   A0A1B6K1J0   A0A2A3E5L9   A0A087ZY47   A0A1Y1MJQ4   A0A154P8Q8   A0A158NPX4   A0A1A9VRF7   A0A336MRA2   A0A067QTZ9   A0A1A9XDX3   A0A151IVK9   A0A195BET1   A0A195FH63   A0A1B0DNP4   A0A151IDD0   A0A1B6F8I2   A0A0N0BE69   A0A2J7R9A1   A0A1B6L944   A0A1S3DH01   A0A0A9XH50   A0A0P4VY36   R4WIN7   A0A224XVJ8   A0A0V0GC56   A0A069DR86   A0A1Q3G4B7   A0A0C9S187   T1HGV4   A0A1B6DH47   A0A182KJH1  

PDB

5EGI     E-value=6.21114e-72,     Score=686

KEGG

101746455    no KO assigned | (RefSeq) trimeric intracellular cation channel type B-like

GO

GO:0015672   GO:0005261   GO:0016021   GO:0016020   GO:0016192   GO:0016791   GO:0016620   GO:0046034   GO:0032559   GO:0004812   GO:0006418   GO:0003824  

PANTHER

PTHR12454  

Length:

275

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

95.63419

Exp number, first 60 AAs:

9.33302

Total prob of N-in:

0.31348

inside

1  -  50

TMhelix

51  -  73

outside

74  -  82

TMhelix

83  -  105

inside

106  -  209

TMhelix

210  -  232

outside

233  -  275

 

 

Pi

220.899958

Theta

186.382741

Tajima's D

0.4544

CLR

0.08698

CSRT

0.503424828758562

Interpretation

Uncertain