SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11383
Pre Gene Modal
BGIBMGA001957
Annotation
PREDICTED:_uncharacterized_protein_LOC106132662_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.605
 

Sequence

CDS
ATGGTGATGACGTGCGTTGCCGGAATGGGTGATACGGTGCTGCGCGAGCGGCTACCGGCTCTCTGGAGGAGAATAGAGGACGCTCACTATAGCTACCTTGAGACTGACGAAAGTCCAGAGAAATTGCAGCAGAAGAAGAAACTTGAAGACTATATAATCGAGTACCTGTCTTTAGTGCCTCATGAATGTAAATTCGGTTTATCGGAGACGGGAAAAGTCTTCCAGCGGACAATCAACGAGTTACCCGACTTTAGTGCGTACCGCGCCGGCATCGGGTGGGCGGCTCTGGCAAGATACGCGACCAACCTACTCGCTCAGCCTTGGAGGAAGGAATACAGGTCTATCAGGTTGTATTCTGGATACTACAAACACGAAGTGGAAGCTAATCTCGTCAGTGCCGAGACGCTTCTCCACGCGATGGGCTACAAGCCGGCTGGGAGCGGCAGGCTGGTGTTGGAAGAGCCCATCTGCCCTGACATGGTAGCTGCGGTGTCTAGGGACGCCCTCATAGCGCATTGCGAATGTCAGATAATGTGCCAGATCTGGGAGGCTGTGTGGAGTAACGGAGTGCGCGCCACGTGGGCGGAGATCGCTCGGCAGCGTGCGCAGCCCGACACGCAGCACGCCCGCAGCCGCGGATACGGACACGATTCAGACATATATTCGAATGTTCCTGTGACGGCTGCGTCAGAGCCCCCCCACCGCAGTAGAATGGTCGACCCCCGATATCACGACCACTCCCTGCAGCAGTGCGGCTACCTGTGCGAGGACCCACACGAGGACTTCCCAGTCGTGCCGTACATGGTGCCTCCAGCAATGATGTACCCGTACCAGCACCCGCACGAGGTTCCCGTCACCCTGCCCCAGTGCAGCACAGTCCCCATGATGACTCCCTACGGCGTGCCTTATTACTACCCGGTCCAGGCCCCATACATGATCCCCACGCCCGTATATCCCCCCATAAAACACGCAACGAACGTACCAATCAATGGCTACCCTCCAGTCGCACAATACAAATATCCCGCAGTGCCCACGGGACAACTCATAGAAATCGAATCGAACTACGAGAACGGTAAATTTGAGAGGTATAGAGACGAAGACAGGCACAAGCGGAGACAGGAATCTTCTAGGAGGAACAGCACTTCTAAGTCTGGCTTCAGTGACGTCACACTACCAAGTCTGCCTCGCTCTGACACGCAACCCACGCTAAGCAAAGCGAAAGAAGACGGCATGGGCACCTACGAGAGCTGGGACTACGTTTTCAGAAATTTATCGAGTAAAGACCACGACGAGAGCCGGAGCAGGTTCTCTCCATCTCTCGATAGAGACTCCCGGACCTTGGACAGATTGGACAGGGAAGAGAGGAGAGCCAAATACCAACCGACTACCCTCGATTTAGAGGACGGCCTCCAAGCGTTACACCTGGACCGAACTTACGACGAGGAGATGTACAGGACCGCGAAAGTTAACGAAAATCTAATGAGAATGAAACAGGAACAGGAGTCGAAACGAACGAAGCAACTCGCCAAGAAACAAACGGACGAGAGAAGGACGAGGAAGGCGACCGAGCCTATCGGTAACCCCGAGGCTGACGCGTTGGTCCCCAACAAGGTCGCTCCGGATAAAGTCAAGTTGCTGACGAAGAAGGAAATCAAGGAGAGGAAGGACGTTATCAAACAGCAGAACAGCGCGAACGGCCCTGTCCAAAGCACGGCCGAAGTCAAGAAAGTGAGGAAGCCCGCGAAATTGGTAGCCCAGGAAATCGAAAAACCAAAGGGCAAGACTGCAGAGAACGGCCACCAAAATACAGCGCACTCTTCGAAAACGAATGCATCGTCGAGTCCGCAGAGCTACGATCTGAAAGCGCAGCTAATAGTGTCGTTAGACGAACCGGACCAAGTGAGGAGGTCGCCGCCGGGACAGAACGGCGAGAACCGACCCGCGAGCCGGACGTCATCATCGCACGAGAAAGAAAAACCGGCTAATCAAACGAAAACCGGGAAATGGGAATGCGCCACGTGCACGTACTTGAACCGGGACGCGCTCGTGGCGTGCGACATGTGCGGCAAGTCCAGGAGGGGCCCCCAGATCGAGCCGCTCACGTCGGGGGGTCGGGAGTGCCCCGCCTGCACGCTCGTCAACCAGCGGGACGCGAGGGTCTGCGACGCCTGCGGGACCAGCCTGGAGCACTGCCCGACATGA
Protein
MVMTCVAGMGDTVLRERLPALWRRIEDAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVPHECKFGLSETGKVFQRTINELPDFSAYRAGIGWAALARYATNLLAQPWRKEYRSIRLYSGYYKHEVEANLVSAETLLHAMGYKPAGSGRLVLEEPICPDMVAAVSRDALIAHCECQIMCQIWEAVWSNGVRATWAEIARQRAQPDTQHARSRGYGHDSDIYSNVPVTAASEPPHRSRMVDPRYHDHSLQQCGYLCEDPHEDFPVVPYMVPPAMMYPYQHPHEVPVTLPQCSTVPMMTPYGVPYYYPVQAPYMIPTPVYPPIKHATNVPINGYPPVAQYKYPAVPTGQLIEIESNYENGKFERYRDEDRHKRRQESSRRNSTSKSGFSDVTLPSLPRSDTQPTLSKAKEDGMGTYESWDYVFRNLSSKDHDESRSRFSPSLDRDSRTLDRLDREERRAKYQPTTLDLEDGLQALHLDRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTRKATEPIGNPEADALVPNKVAPDKVKLLTKKEIKERKDVIKQQNSANGPVQSTAEVKKVRKPAKLVAQEIEKPKGKTAENGHQNTAHSSKTNASSSPQSYDLKAQLIVSLDEPDQVRRSPPGQNGENRPASRTSSSHEKEKPANQTKTGKWECATCTYLNRDALVACDMCGKSRRGPQIEPLTSGGRECPACTLVNQRDARVCDACGTSLEHCPT

Summary

Pfam
PF09409   PUB        + More
PF00641   zf-RanBP
Interpro
IPR001876   Znf_RanBP2        + More
IPR018997   PUB_domain       
IPR036339   PUB-like_dom_sf       
IPR036443   Znf_RanBP2_sf       
IPR029746   Tamozhennic       
SUPFAM
SSF143503   SSF143503        + More
SSF90209   SSF90209       
PDB
5LJM     E-value=3.59552e-06,     Score=124

Ontologies

Topology

Length:
733
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03025
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00157
outside
1  -  733
 
 

Population Genetic Test Statistics

Pi
231.595576
Theta
185.819449
Tajima's D
0.231197
CLR
0.911959
CSRT
0.428428578571071
Interpretation
Uncertain
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