Silkworm Genome Informatics Database

Gene

KWMTBOMO11364

Pre Gene Modal

BGIBMGA014213

Annotation

hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]

Location

Bomo_Chr19(-):4325833-4327116 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.359

CDS

ATGATTCGAGACTACTTGTTAGCCCTTTCCGCAGTGACCAAATCAACGTCAATCCGCTTCATTTCTCGCATTTCCAACTCGAGAATCTGCGTGTACTTGGACTCAAAACAAACAGCTGACGAATTGGTTGACGTCATTAAAAACGTTAAAGTGAAAGACCACGTATTGGAGATTCGGCCGCTGATAACAAGAAACAAACGTATCGTTTTATCCAACGTTTGCCCCATAATTCCGCACGATATCTTAGAAGAAAAATTTAATGAAATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAGGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAACTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGACAATTCAACTACTTCCAATGACACTACAGTCGAATCCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAATATGAAATAAACCAAATCTATCCCCCTACTGAAATTTCCAAACCGCAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACTTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGCAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAAGTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGCTGGATCAGTCAGAAACACTACCTCACTTCCCACTCACCTTAGACCAGTTTATTAGTTTTTTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACGGATGATATCCCGGATCTAATTGATATGTGCACGTTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG

Protein

MIRDYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKNVKVKDHVLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQDNSTTSNDTTVESNKLPSQSLNSTINLEYEINQIYPPTEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRSEEQVWKDIKTELDQSETLPHFPLTLDQFISFLDNSRSKQNLQELIKDYTDDIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Uniprot

H9JT23 Q76IM0

Pubmed

19121390 12949131

EMBL

BABH01030666 AB097139 BAC82610.1

Proteomes

UP000005204

PRIDE

H9JT23

Pfam

PF00098 zf-CCHC

Interpro

IPR001878 Znf_CCHC + More
IPR036875 Znf_CCHC_sf

SUPFAM

SSF57756 SSF57756

ProteinModelPortal

H9JT23 Q76IM0

KEGG

102466386 no KO assigned | (RefSeq) Mir2835, bmo-mir-2835; microRNA 2835

GO

GO:0003676 GO:0008270 GO:0016311 GO:0016791 GO:0016620 GO:0046034 GO:0032559 GO:0004812 GO:0006418 GO:0003824

Length:

405

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01383

Exp number, first 60 AAs:

0.01148

Total prob of N-in:

0.00357

outside

1 - 405

Pi

0.920364

Theta

1.655542

Tajima's D

-1.215834

CLR

3.456496

CSRT

0.0932953352332383

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree