Silkworm Genome Informatics Database

Gene

KWMTBOMO11355

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(+):4001494-4002448 View in EpiBrowser

Full name

ATP-dependent DNA helicase

Location in the cell

Cytoplasmic Reliability : 1.063 Extracellular Reliability : 1.223 Nuclear Reliability : 1.288

CDS

ATGGTGGTTATCTCTGGTCTGCCCTACGTGGATTGCTTTATTAACGCAGAATACACCGATCCTCCCTGGGACCTAGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGCGCGGCGGAAGTTCGAGCGCGGAAACTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACTGTCGAGGCGATCCGCCCGGTCCTCTCGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGAGCGACGCAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCACCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTACAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGAGCCGGGGTTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MVVISGLPYVDCFINAEYTDPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCTAFAEQRRVLVTKIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGVRRRAFVQLQPL

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Similarity

Belongs to the helicase family.

Uniprot

Q5KTM7 A0A0J7K2M2 A0A437BTM1 A0A437AS17 A0A0J7KJ07 A0A0J7KJH4 + More
A0A0J7JZF7 A0A0J7JZ13 A0A0J7KT62 A0A0J7KYD2 A0A0J7KM81

EC Number

3.6.4.12

EMBL

AB126050 BAD86650.1 LBMM01016102 KMQ84557.1 RSAL01000009 RVE53812.1 + More
RSAL01001432 RVE40790.1 LBMM01006662 KMQ90413.1 LBMM01006657 KMQ90417.1 LBMM01019838 KMQ83439.1 LBMM01019839 KMQ83438.1 LBMM01003452 KMQ93523.1 LBMM01002052 KMQ95336.1 LBMM01005634 KMQ91349.1

Proteomes

UP000036403 UP000283053

PRIDE

Q5KTM7

Pfam

PF05970   PIF1        + More
PF00059   Lectin_C
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR016187   CTDL_fold        + More
IPR010285   DNA_helicase_pif1-like
IPR016186   C-type_lectin-like/link_sf
IPR001304   C-type_lectin-like
IPR018378   C-type_lectin_CS
IPR027417   P-loop_NTPase
IPR000477   RT_dom
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf

SUPFAM

SSF52540   SSF52540        + More
SSF56436   SSF56436
SSF56219   SSF56219

Gene 3D

3.10.100.10 3.60.10.10

ProteinModelPortal

Q5KTM7 A0A0J7K2M2 A0A437BTM1 A0A437AS17 A0A0J7KJ07 A0A0J7KJH4 + More
A0A0J7JZF7 A0A0J7JZ13 A0A0J7KT62 A0A0J7KYD2 A0A0J7KM81

KEGG

101743754 no KO assigned | (RefSeq) uncharacterized LOC101743754

GO

GO:0003964 GO:0016021

Length:

231

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00672

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.01484

outside

1 - 231

Pi

30.74189

Theta

27.199519

Tajima's D

0.616928

CLR

9.251034

CSRT

0.546322683865807

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree