SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11352  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001854
Annotation
PREDICTED:_polynucleotide_5'-hydroxyl-kinase_NOL9_[Amyelois_transitella]
Location
Bomo_Chr19(+):3954174-3965631      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.364
 

Sequence

CDS
ATGGATTTTTTTGAAAAAGCACACGTTTTGAAAAACGAGACTTCAAAAGAGAAATCAAACTTATTAGTAAAGAAGCAACTTAAACAAATGCTAAGAGGCTATAAACAAAGTGACAACAAACTTATACAGGAGGCTACAATATTAAAAAGCAACATAATAGACCCCGCTCTTGACTTCGATGATAACACATCAGTTAGCGGGTTTTCAGATCTGAACCTCACTAATTCCAGTCTTGATAGTTTAACTCCGAATACAGAAAAAACACAAGACAAAAGTTTAGATGACAACGATTTCAGTGATTTAGTTAATGATGAACAAATCGTACAAGATATAGATGAAGAATCTATTTCTGAAAGCAATGATGATATCCAGTCACTCTCGGAGGTTAGTGAAGAAACCAGCGACATTAAATCAGATGAAAGTGATGTCGTATCTTTAATTAATAGCTTAGGTGAAAGTTCAGGGGCAGATGTTTATGAGACCGAATCTGATGATTTTGATACTGATGGAGCTTTAGCTAGTACAATACTAAAGAACTTAAAAAATAAATCTAATGAAGGTACTAAAACTAAGAAGAGAAAATTAGATCCCATAGATTCTGAAAGTAAATCTATGGATAAATTCGACAGTATGTTAAAGACAAAAAAGAAATTAAATAAGAATACTATTAAAAAGAATAAAATCATAAATTCTGATACTGTAAATGAATCTCCTCAATCTGATGATATCAATTCTTCTTCCTCATCCACTAATTCCTTACCTTACATTTCAATAAAAGCAGCAAACATGCCGGAGCAAAATCTTAATGAAATATTAGGAAAATATTGCCATCCCACTGTGAAAAACTTACCTAGCGACAGCCACACAGCTGTAAAAGATTTTAGCATATTTTCTACTGAGAGCATTAATAGCTCAGAAATTGAAATTGAAGAAGAAGCAGACAGCTTAGTCCCCGAGTTAGGTGATGTAGCTGTTATTGACGAGTTAGAAGTAGAGACAAACCCAGAAACTTTAACTGAAATAGCCAGCATTGCTGTTGATGAAACAATGCCATCAGAAAACATTAGTAATGAAGAAGACTCAGTTGATTTTACAAATAAGCCCAATTTGGATTCAGTACAGATTTATTATGGAACAAAACATTGTGTTTTTGTATTGAAACATCCAGCAATATTATATTTTCATGGTAAAGTAACAATGAGAGCATTAGGTGGCCAAATGGAAGTTTTTGGATACAATTTAAAAGATCAATACCAAGAAGTATATGCTCCAAGATTGAATTATGCTTTGTCTGTAAAAACGGTAGAGTCTGAAAATAATTATCAGGGTCTGTTTAGTAAACTAACTGCTGTAGGGATATCTGTGAAAGAAGCTGAAGAAATTGTAACAACACTTGGAGAATATGATGGTATTCTCAGTCTTGGACCCCTGAAAGACCTCAAAATGGATTTTGTAGAAAATAATTTTAGTATATGCGAACTGTTTACGAAAACAAAAAATGTTCAATCATGTTTTCATAGAGCATCAGACATTTTAGGTTGTTCGTTGTATTTAAAAAGACCCTTGAGGACATACGAAGAAAGACCACAGTGGGAACAGGCATATACATACGGGACAGATCCAGGAGCTAGAGGTATTATATGTGGTGGGAAGGGGACTGGGAAGTCAACTATGCTCAGATACCTATGCAATAGATTGCTGGATCATGGACCGGTGCTAGTCATAGATTTAGACCCGGGCCAGGCAGAGTTCACAGTTGCAGGAAATTTATCTGTAACAATTGTCAATGAACCATTACTCGGACCTAATTTCACTCATTTGAAGACACCTGAGAAGATGCTAAACATTGGCATGATTAGCCCTATGGATAACCCAACCAGATACGCTTCGGCTGTCCAAGAGATTATTGCTTATTGCCACCAAACCCACAAGTACAGATCAATGCCGTGGGTCATCAACACAATGGGAATGACCAACAATTTAGGACTTAAATTTATGTTATTGACTATTTTGGCAGCGAAACCGACATTTTTATGTCAGATATATTGTAAATCCTATAAAAAACAGTTTGAATGCCCATTACAATCAAACTCTGTAAGAAGATTGTGTGAATTTTATAAAAATGATAGACTGCTCAAGAATACGATTTGTCCCGAGTATTTTGATTACAATTTTATGACATTCATTACCGTAAATGAATCTAGTAATCAACCAAAAAGGGCCATACCACTAATGCCTAGAGATGAAAGATATTTAAATTATTTGGCATATTTTGGAGAGTTATTGAACATGCACCAAGGAACAAATATTTTAGGAATTGTGCCATATTCAGTGGAATTGAAAAATTTATGTATAGGTCTGAACGTGAGAGTACCCGAGGATACAGTCACCAAGGTGATCAATGGCAAAATAGTAGCGCTTTGTAAACTGACAACCGTTGATAAGGGCAAAATGTTTACACTGGGAGATAAAGCAATACCATGTCTTGGAAACGGTCTGGTGCGCTGCGTGGATTTCGAGAAACAAGTATTGTACATCATCACTCCATTGCCTGTTGGAATACTCTCCCAAGTTAACACATTGGTGTATTCGGATTGGGCTCCAGAGATAGTAGGGCAAGAGAAATACTTGCCAGACAACATAATTGTCCCTTACCGCATTACATCCCAGCAGAAACAGAAACAGCTCATGATAACACCACGCCGACGGTTCAACCCTTTAGTATTATTGAATATGTCAAGGAAAACCTAA
Protein
MDFFEKAHVLKNETSKEKSNLLVKKQLKQMLRGYKQSDNKLIQEATILKSNIIDPALDFDDNTSVSGFSDLNLTNSSLDSLTPNTEKTQDKSLDDNDFSDLVNDEQIVQDIDEESISESNDDIQSLSEVSEETSDIKSDESDVVSLINSLGESSGADVYETESDDFDTDGALASTILKNLKNKSNEGTKTKKRKLDPIDSESKSMDKFDSMLKTKKKLNKNTIKKNKIINSDTVNESPQSDDINSSSSSTNSLPYISIKAANMPEQNLNEILGKYCHPTVKNLPSDSHTAVKDFSIFSTESINSSEIEIEEEADSLVPELGDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSVDFTNKPNLDSVQIYYGTKHCVFVLKHPAILYFHGKVTMRALGGQMEVFGYNLKDQYQEVYAPRLNYALSVKTVESENNYQGLFSKLTAVGISVKEAEEIVTTLGEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNVQSCFHRASDILGCSLYLKRPLRTYEERPQWEQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNFTHLKTPEKMLNIGMISPMDNPTRYASAVQEIIAYCHQTHKYRSMPWVINTMGMTNNLGLKFMLLTILAAKPTFLCQIYCKSYKKQFECPLQSNSVRRLCEFYKNDRLLKNTICPEYFDYNFMTFITVNESSNQPKRAIPLMPRDERYLNYLAYFGELLNMHQGTNILGIVPYSVELKNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLVRCVDFEKQVLYIITPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQQKQKQLMITPRRRFNPLVLLNMSRKT

Summary

Uniprot
A0A3S2PCS2   A0A2W1BL40   A0A2H1W1H9   A0A212F4Z1   A0A2A4JRE8   A0A194R169   + More
A0A2A4JRJ4   A0A0P6I5E7  
Pubmed
28756777    22118469    26354079   
EMBL
RSAL01000096    RVE47724.1    KZ149982    PZC75792.1    ODYU01005766    SOQ46955.1    + More
AGBW02010285    OWR48807.1    NWSH01000823    PCG74033.1    KQ461073    KPJ09586.1    PCG74030.1    GDIQ01016607    JAN78130.1   
Proteomes
UP000283053    UP000007151    UP000218220    UP000053240   
Pfam
PF16575   CLP1_P
Interpro
IPR027417   P-loop_NTPase        + More
IPR032319   CLP1_P       
SUPFAM
SSF52540   SSF52540       
ProteinModelPortal
A0A3S2PCS2   A0A2W1BL40   A0A2H1W1H9   A0A212F4Z1   A0A2A4JRE8   A0A194R169   + More
A0A2A4JRJ4   A0A0P6I5E7  
PDB
4OI4     E-value=0.00384997,     Score=99

Ontologies

KEGG
101739516    K06947 polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] | (RefSeq) polynucleotide 5'-hydroxy
GO
GO:0005524   GO:0016301  

Topology

Length:
916
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.41125
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00011
outside
1  -  916
 
 

Population Genetic Test Statistics

Pi
189.242367
Theta
160.993767
Tajima's D
0.538813
CLR
0.003999
CSRT
0.527323633818309
Interpretation
Uncertain
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