SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11349
Pre Gene Modal
BGIBMGA001852
Annotation
PREDICTED:_uncharacterized_protein_LOC101739897_[Bombyx_mori]
Location
Bomo_Chr19(+):3910094-3923821      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.085
 

Sequence

CDS
ATGCTGAGTAAGCATAGTAAGAAATCTCTTGGTAATAGTTACCGACCGAGAGTACTGACGCACCCCGGGGTCGGTATCCAGCGGGTGCTCGTGTGCTGCCCTCTATCGACCGTGCTGAACTGGGTCGACGAGATCCACAAATGGATCGGGCCTGTAACCAATCAAATAAAGGTATTCGAACTGTCCAAACTGAAAAAGACATACGAGAGAGCGTACCAACTCGAGGACTGGTACAGCGGCGGCGGTATCTTTATAATCGGCTACGAGCTGTTCCGGAGTCTGTCCACGCTCGACCCTGAGCTGGACGACATCCGGCCGACCATCGTCAACAAGATCCGCACCGCCCTGCTGGACCCCGGGCCCGACATCATCGTGTGCGACGAGGGGCACCTGCTCAAGAACGACTGCTCCGTGCTCGCCGTCGCCATGAGCCGCGTCGCCACCAGGCGCCGGATAGTGCTCACCGGAACTCCCATGCAGAATAATCTAAGGGAATATTTCTGCATGGTCAATTTCGTCAAACCGAATCTGCTGGGGACGTACTCGGAGTTTTCCAATCGATTCGAAAATCCCATCATGAACGGTCAACACCGCGACTCGAGACAAGAAGACATAAGACTTATGAAAGCTCGCACGCACATCCTGCACAAAGTTCTCGAAGGGTGCCTACAAAGGCAAGAAGCTTCGGTGCTCTACCCGTATCTGCCCAAGAAACATGAATACACCGTTTTCATAGCGCTGACGCAGTGCCAGTGGGACCTGTACAAACATTACCTGCTGCACTACGGGAAACAAACAAAGAACAGCATCCTGAAAGACTTCCACATCCTCCAGAAGATTTGGTCGCACCCTCAGGTGCTACACATATTTCAAACTAAAGCCAGAGACGAGAAAGCCAAAATTAAAGCGGAGAAGTTGGAGGACGATCTCGCCCACGAGGACATAACATCGGAGGACATCAAGCCGGCGGAAACGGAAGTGTGGTGGCTCCAGTACCTGGACGGCGGGAAGATGCTGGACAGCCTCGAGAGCTCCAACAAGTTTGCTGCCGTGTTTCAAATATTAGAGGAGTGCACGGCGCTTGGAGATAAAGTTTTAATATTCTCAACGTCGCTCTTCACGCTGGATGCCTTGGAGTACTTCTTACGGAAGATCAAGAACTGGAGTCTGGGTCACGACTACTACCGTCTCGACGGATCGGTCCCCCCGGAGGTCCGACAGAAGTGGTGCAGAGAGTTCAATGCCGAGAACAACATTAAGACGAAACTGTTCCTGATCTCGACCCGGGCGGGCTCGCTGGGGCTTAACATGACGGCGGCCAACCGGGTCATCATCCTGGACACGTCATGGAACCCGGCGCACGACATACAGAGCATCTTTAGGGTCTACCGCTTCGGGCAGAGGAAGGACTGCTACATATATCGATTCGTTGCCATGGGAACAATGGAACAGAAGATATACGAGCGGTCGGTGACGAAGCAAGCGGTCGCCTGCCGCGTCGTGGACGAGCAGCAGATAGAGCGCCACTACAACAGCGCCGAGCTCACGGAGCTCTACCGGTTCGACGAGACAGGCGCGAGCGTGGCGGGCGGCGTGGCGGTGGGCGTGCAGGACGTGGCGCTGCTGCGGCTGGCGCGCGACGCCGCCATCCACGCGGTGCACGAGCACGACTCGCTGCTGCGCGGCTCCACCGAGCCCGGCCTGCCCGAGCACGAGCGCGCCGCCGCCTGGATGCAGTTCCAGCAGGAGCACGCGCACAAACAAATGCAAAATGAACTCGCAGCAAACAACACGAGGATATCGAGCAAGCTTCAGGGCCACGAGTACGCTAAGTCGCCCGTTCCGCAACCATCGCCAAGAAAAGACGAAGCTCCAAAAACGAAACGAGGAAAGAAAAACAGCGCGGTCCCCCCGCAGGACAGCGCGGCCGAGAGCAGCATCCAAGGATCTCTAATCAACGAGATAAGGAACATACTAATCAACCACAATTTCCAAATAAGTAAAAGCGAAGACTTACTTAACTTTGTCAATAAAGTACGGATGATAGTGTCGACGGGAAGCCCCTCCGACGACGCGGTGGCGATGAGCGTGGCCGGCCTGCTGCTGCAGCAGCGCTGGATGGCCATGCCCGTCGCCATCGCCATGGTGTGCGAGGCGATAAAGCGACGCGTAGTCGAGGAAGGACTAAAGCAAACGCACGTTGTCGGACCGGACGCGACGCCGCCGGACGTGACGCCGCCGGACGCGACGCCGCCGGACGCGCCGCAGACGAGCGCCGCCCAACGTCAAGACGCGTCTGTGGGAAGCAGACGGACGAAACGGAAAGCGGCCATAGCCGCGGAACGACACCTCGACATGATCGTGCCGAATCTACTTGATGACGACAGCGATTTGGATACCGAACCCGCCTATACCGAACCCGCACATACGAACCCAACGCGGAAGACAGAACAGAAATCTGGAAAGAAAATCAAGATGACAACTACTATCGATATGGAACCCGCAAATAGTGCACGTGATAATATAGAAATGCATCGATCTAGTACTGTCGAACGAGAGCCAGTCAATACAGTTGCAAACATACCGACCGCGCCTCCGAAAGACGCTGAAGTCGTTGACTTAGATTCGGAGCCACAGAACGATACACCCGACGTTATAGTGGACAGCGACGAGGGCGTCGAAGTGAACAGCGTTATATCCAACCGCCCGAAACGGACGACGACATCGGAGCGATCTAGAAAAAATAAAAACGCTAAATCGAATAACAAGGAGACCGACAATGATACGTACAGCATTTTAATTGAAAACGATAGTGAATTAGCGAAGGACCCTCAGCACGGCGCGCCCCGCCCACACGACACGTCAGCCGAAAGACCGATTAAGATAAAGAAAGTCGCTCAAATAGATGTGGAGCTCGTGAGTAACGCTGAGCCCGAAGCCGCCATCGCGCTGAGCGACGACGACGAGCCCATAGTCAAAACCAACAAGATCACGTACACGCCCAAAACGAGCAAGAAAAAGAAACCACAAGGAAAGATTAATCTGCCCCCGCTACTATTGACAAACGAGAACTTCATAAAGATCGTCGCCCACACGTACCTGTCCGGCAACCCTAAGCTGGACCGCGACGCGGCGCTACTGGCCGCCCAGTACAGCACGCTTAAAGCTCTCAAGGAAGTCGAAGCTACGGGGAAGCTCCTCGACAGTGGCCCCATCTATGATATAGCCGTTAAGGAACTAGGCGTCGAACTTCTTACGAAACTGCACGGCACGATGTCGAAACCGACGAGGAGTGCTGAATATTCAGCGGCGAGTCTCCTAAAGAAATCCTTGATGAATATAGAAAACCAGATCAAAGAGGACGCTGCCAACGAACCAACGGTCAGGACGCACGAGCACCCGCCCCCGCCCCCGCACCCGCCCCGCGTACCGCCGCTCATCATTCAACGAAATAAAAAAACTGGACTGAATACTGCAATCAACGGACATCCGAAGGGCAGCCTCGAACAAAAGGACGATTCGAATGTCGAGAAATTGTCGCAGCACGAACCTAGGAAACACGTCGTCCCGATCAGAATGTACCAGCGCCCCACCGCGCCCGCGCCCGCCACCGTCCACACGACGCTGACTAGCGACGAGTGCATCCTGCCCGACGACGATGACGTCATCATCAGCGACATCCTGCCCGCCGTCTCCTGCCCGGCGCCCACTCCCTCCACGCAGACCTCTTCCGCGAACAAAGTCGTGGCCGGAACCTCAAGGGACTACAGCACAGCAACAGGATTGCCCCAATACCTTGGTCGCCCCGATCATCCCCGGATACCGGAAGACAATCAAGCAGCGGTCGTGAACACCGAGCGTGCCGCCTCTACGCAGGGCCCGGCGGATTGTATATGTCTGGACAGCGACGACGACGAGGGCCCCGCCCCCCCGCACCCCGTCTCCATATCGTACACCCCGCCGGTCCCCGCGCCCCAGCGCTCCGACGGTCCGCCGCAGTACATCACCGGCGACACCAAACGGACACCGAAACCGCCGGCCGCCGAAACAATCGCAGCCGCGAATCCCACGGCGCCACCAGTCGTACTCACGTACGGGCGCAATAGGAAATCTCTAAGCCTAGCTGTGAAAACCGCCGCCCCTCCAATCGCCGCGGTCCCCCCAACCCACGTGAGCGTTTCGGAGCCCCCTCGCACGGCAGACGTCGTGAGCCCGGTCGACAAGGTGAAGTCGCAGGAGCCCCGGGCGCCGGCGCCGGCCGAAGCGCCGCCAGAACCAATGTCGATGTTTAAGAACGTTGTACACATCATGGCGCACGACGCGCATCCGCTATCGAAACCCGAGCCCTCGCACAAAGCCGCCAATAGATTACAAACCGTCAAGTTGCTGCCTGTTAAAAAGCTGAGAGCTCAGATCGACGCTCCGATAGCTTCGTCATCGAAAACGTCTAGGACCCGTGAGTTCGGTAACTGCGCCCTCAAAGCACACAACGAGCGCCTCCACCTCCAAGCTGCCGCTAAGTAA
Protein
MLSKHSKKSLGNSYRPRVLTHPGVGIQRVLVCCPLSTVLNWVDEIHKWIGPVTNQIKVFELSKLKKTYERAYQLEDWYSGGGIFIIGYELFRSLSTLDPELDDIRPTIVNKIRTALLDPGPDIIVCDEGHLLKNDCSVLAVAMSRVATRRRIVLTGTPMQNNLREYFCMVNFVKPNLLGTYSEFSNRFENPIMNGQHRDSRQEDIRLMKARTHILHKVLEGCLQRQEASVLYPYLPKKHEYTVFIALTQCQWDLYKHYLLHYGKQTKNSILKDFHILQKIWSHPQVLHIFQTKARDEKAKIKAEKLEDDLAHEDITSEDIKPAETEVWWLQYLDGGKMLDSLESSNKFAAVFQILEECTALGDKVLIFSTSLFTLDALEYFLRKIKNWSLGHDYYRLDGSVPPEVRQKWCREFNAENNIKTKLFLISTRAGSLGLNMTAANRVIILDTSWNPAHDIQSIFRVYRFGQRKDCYIYRFVAMGTMEQKIYERSVTKQAVACRVVDEQQIERHYNSAELTELYRFDETGASVAGGVAVGVQDVALLRLARDAAIHAVHEHDSLLRGSTEPGLPEHERAAAWMQFQQEHAHKQMQNELAANNTRISSKLQGHEYAKSPVPQPSPRKDEAPKTKRGKKNSAVPPQDSAAESSIQGSLINEIRNILINHNFQISKSEDLLNFVNKVRMIVSTGSPSDDAVAMSVAGLLLQQRWMAMPVAIAMVCEAIKRRVVEEGLKQTHVVGPDATPPDVTPPDATPPDAPQTSAAQRQDASVGSRRTKRKAAIAAERHLDMIVPNLLDDDSDLDTEPAYTEPAHTNPTRKTEQKSGKKIKMTTTIDMEPANSARDNIEMHRSSTVEREPVNTVANIPTAPPKDAEVVDLDSEPQNDTPDVIVDSDEGVEVNSVISNRPKRTTTSERSRKNKNAKSNNKETDNDTYSILIENDSELAKDPQHGAPRPHDTSAERPIKIKKVAQIDVELVSNAEPEAAIALSDDDEPIVKTNKITYTPKTSKKKKPQGKINLPPLLLTNENFIKIVAHTYLSGNPKLDRDAALLAAQYSTLKALKEVEATGKLLDSGPIYDIAVKELGVELLTKLHGTMSKPTRSAEYSAASLLKKSLMNIENQIKEDAANEPTVRTHEHPPPPPHPPRVPPLIIQRNKKTGLNTAINGHPKGSLEQKDDSNVEKLSQHEPRKHVVPIRMYQRPTAPAPATVHTTLTSDECILPDDDDVIISDILPAVSCPAPTPSTQTSSANKVVAGTSRDYSTATGLPQYLGRPDHPRIPEDNQAAVVNTERAASTQGPADCICLDSDDDEGPAPPHPVSISYTPPVPAPQRSDGPPQYITGDTKRTPKPPAAETIAAANPTAPPVVLTYGRNRKSLSLAVKTAAPPIAAVPPTHVSVSEPPRTADVVSPVDKVKSQEPRAPAPAEAPPEPMSMFKNVVHIMAHDAHPLSKPEPSHKAANRLQTVKLLPVKKLRAQIDAPIASSSKTSRTREFGNCALKAHNERLHLQAAAK

Summary

Uniprot
H9IX69  
Pubmed
19121390   
EMBL
BABH01018201    BABH01018202    BABH01018203   
Proteomes
UP000005204   
PRIDE
H9IX69   
Pfam
PF00271   Helicase_C        + More
PF00176   SNF2_N
Interpro
IPR017956   AT_hook_DNA-bd_motif        + More
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR000330   SNF2_N       
SUPFAM
SSF52540   SSF52540       
Gene 3D
3.40.50.10810    
CDD
cd00079  HELICc
ProteinModelPortal
H9IX69  
PDB
1Z3I     E-value=2.46113e-61,     Score=602

Ontologies

KEGG
101739897    K10779 transcriptional regulator ATRX [EC:3.6.4.12] | (RefSeq) uncharacterized LOC101739897
GO
GO:0005524   GO:0003677   GO:0006508   GO:0008237   GO:0004829   GO:0005737   GO:0006435   GO:0000166   GO:0004812   GO:0006418   GO:0003824  

Topology

Length:
1507
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0861300000000003
Exp number, first 60 AAs:
0.01594
Total prob of N-in:
0.00434
outside
1  -  1507
 
 

Population Genetic Test Statistics

Pi
219.374877
Theta
170.336412
Tajima's D
1.068427
CLR
0.170938
CSRT
0.67831608419579
Interpretation
Uncertain
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