Gene

KWMTBOMO11337

Pre Gene Modal

BGIBMGA001974

Annotation

ionotropic_receptor_[Dendrolimus_kikuchii]

Location

Bomo_Chr19(-):3549600-3557154      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.424

CDS

ATGAGTGCACTAAGTCAACAGGGATGCTTTATAGAACCTAAAAGAGCTCCAGGTCGCATAATGCTATTTGTACTATTCACGGCGTTAATGGCGTTGTACGCTGCGTACTCTGCTAACATCGTGGTGTTGCTGCAGGCGCCTTCCAATTCCATTACGAGCCTTGCGCAGCTGGCCGCATCCAAGGTCACGTTGGCTGCCAACGATGTGGACTACAACCATTTTGTGTTTAGCCTATACAAGGATCCGGTGCGAGTGATGATACACAAACGCATCGACCCGGAGACCGGAAACGGTCAGTTCTACAGTCTCGAAGACGGAGTGGATATGATTAGACAGGGTTTCTTCGCGTTCCACTCGATCGTGGAGCCGGTGTACCGACGCATCGAAGAAACGTTTCTGGAGACAGAGAAATGCGACCTCACAGAGGTTGACTTCCTGAGCAGTTTCGATCCCTTCGTTCCAGTTAAGAAAGACTCTCCTTATCTAGAACTACTGAGAGTCGTCTTCAAACAAATCCGCGAGTCTGGTATCCAGTCGGCACTGAACAGGAGGTACCAAGTGCCGAAGCCTCGTTGCTCTAACAAAGTGGCGGCCTTCAGCAGCGTCGGCATCGTCGACTTGAGACCTGTTCTTATAATGATGATCTACGGAATAATATCGTCCTGTTTGATACTCATTATGGAGATGTTGGTGTTTAAAATAGCACATCACTAG

Protein

MSALSQQGCFIEPKRAPGRIMLFVLFTALMALYAAYSANIVVLLQAPSNSITSLAQLAASKVTLAANDVDYNHFVFSLYKDPVRVMIHKRIDPETGNGQFYSLEDGVDMIRQGFFAFHSIVEPVYRRIEETFLETEKCDLTEVDFLSSFDPFVPVKKDSPYLELLRVVFKQIRESGIQSALNRRYQVPKPRCSNKVAAFSSVGIVDLRPVLIMMIYGIISSCLILIMEMLVFKIAHH

Uniprot

A0A076E9E5   A0A2W1B5Q5   A0A0F7QEH8   A0A2A4J494   A0A1B3B706   A0A1B3P5I3   + More
A0A0F7QED4   A0A0U3C1E6   A0A076E9D7   E5FIA9   A0A3S2LDH7   A0A2W1BCP8   A0A2H1VKZ8   A0A2A4JCF7   A0A194QGN2   A0A3G6V7H3   A0A3S2NZD5   A0A194QX34   A0A140G9H4   A0A2Z5U789   A0A0S1TK63   A0A2K8GL81   A0A223HCY2   A0A0V0J280   A0A0L7K3L2   A0A345BF19   A0A0L7LEV9   A0A0K8TUC1   A0A075T816   A0A2A4JCR5   A0A2K8GKY9   A0A2W1BDU9   A0A140G9H3   A0A2K8GL77   A0A212FC55   A0A0F7QK07   A0A0K8TUX6   A0A3G6V6P1   H9A5R5   A0A223HDB0   A0A345BF26   A0A223HCY4   A0A1Q1PP74   A0A2P8YXT7   A0A2P8XXS9   A0A2P8YXT1   A0A1W6L166   A0A067QZN3   H9JCP4   A0A076E9D8   A0A1J1IJ30   A0A2P8YXS4   A0A1B3B7C4   A0A2H1WW77   A0A2J7QJP1   A0A3Q8HDA9   A0A0M3SBL7   A0A0F7QIG2   A0A067R2S3   A0A0L7LEE1   A0A146JYY8   D6X2Y3   A0A1Q1PP98   A0A0K8TUD4   A0A2K8GL75   H9A5R2   A0A223HDB2   A0A076E9E7   A0A223HCX7   A0A3S2L3E3   A0A195CN68   A0A310SDV6   A0A2A4IYY8   A0A067QXL6   A0A1J0KKM2   R9PST2   A0A1J0KKK9   A0A2H1VST4   A0A139WP17   A0A0S3J2Z8   A0A151HZ22   E2B852   A0A3G6V787   A0A386H9K5   A0A1B3B728   A0A151JV83   A0A1B1FKH3   A0A0S1TQ33   A0A345BF17   A0A345BF14   A0A084WNB9   A0A0C5DMP4   A0A182I3C0   A0A182TM62   Q7PT48  

Pubmed

24998398    28756777    25803580    27538507    26657286    21091811    + More
26354079    30465940    27004525    26812239    29375398    28150741    27006164    26227816    29727827    26017144    25027790    28736530    22118469    22363688    29403074    24845553    19121390    27171401    26265180    18362917    19820115    27836740    23517120    26626891    20798317    24438588    25665775    12364791    14747013    17210077   

EMBL

KF487730    AII01128.1    KZ150379    PZC71098.1    LC017791    BAR64805.1    + More
NWSH01003358    PCG66488.1    KT588092    AOE48002.1    KX655903    AOG12852.1    LC017792    BAR64806.1    KP975109    ALT31628.1    KF487720    AII01118.1    HM562973    ADR64684.1    RSAL01000205    RVE44372.1    PZC71097.1    ODYU01003127    SOQ41495.1    NWSH01001928    PCG69641.1    KQ459053    KPJ04095.1    MH193960    AZB49406.1    RSAL01000016    RVE53014.1    KQ461073    KPJ09520.1    KU702626    AMM70653.1    AP017504    BBB06806.1    KR912020    ALM24947.1    KY225533    ARO70545.1    KY283573    AST36233.1    GDKB01000021    JAP38475.1    JTDY01011817    KOB52386.1    MG820672    AXF48843.1    JTDY01001415    KOB73914.1    GCVX01000141    JAI18089.1    KF768728    AIG51922.1    PCG69639.1    KX585402    ARO70295.1    PZC71096.1    KU702625    AMM70652.1    KY225534    ARO70546.1    AGBW02009222    OWR51314.1    LC017793    BAR64807.1    GCVX01000137    JAI18093.1    MH193967    AZB49413.1    JN836715    AFC91755.2    KY283703    AST36362.1    MG820679    AXF48850.1    KY283574    AST36234.1    KY325454    AQM73615.1    PYGN01000296    PSN49052.1    PYGN01001184    PSN36819.1    PSN49051.1    KX609444    KB465935    ARN17851.1    RLZ02208.1    KK852854    KDR14986.1    BABH01034648    KF487721    AII01119.1    CVRI01000054    CRL00245.1    PSN49053.1    KU291857    AOE48107.1    ODYU01011527    SOQ57311.1    NEVH01013550    PNF28811.1    MF625620    AXY83447.1    KP843211    ALD51348.1    LC017794    BAR64808.1    KK852952    KDR13328.1    KOB73913.1    GEDO01000005    JAP88621.1    KQ971372    EFA10663.2    KY325456    AQM73617.1    GCVX01000138    JAI18092.1    KY225535    ARO70547.1    JN836712    AFC91752.1    KY283705    AST36364.1    KF487731    AII01129.1    KY283576    AST36236.1    RSAL01000189    RVE44730.1    KQ977565    KYN01917.1    GGOB01000048    MCH29444.1    NWSH01004502    PCG65035.1    KDR14985.1    KX290686    APC94257.1    GABX01000012    JAA74507.1    KX290688    APC94259.1    ODYU01004051    SOQ43532.1    KQ971310    KYB29515.1    KT381535    ALR72541.1    KQ976712    KYM76980.1    GL446282    EFN88144.1    MH193962    AZB49408.1    MG546648    AYD42271.1    KT588085    AOE47995.1    KQ981713    KYN37386.1    KT268301    ANQ46495.1    KR912013    ALM24940.1    MG820670    AXF48841.1    MG820667    AXF48838.1    ATLV01024582    KE525352    KFB51713.1    KP296776    AJO62240.1    APCN01000204    AAAB01008807    EAA04525.5   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000037510    UP000007151    + More
UP000245037    UP000027135    UP000005204    UP000183832    UP000235965    UP000007266    UP000078542    UP000078540    UP000008237    UP000078541    UP000030765    UP000075840    UP000075902    UP000007062   

PRIDE

H9JCP4   

Pfam

PF00060   Lig_chan        + More
PF02824   TGS
PF03129   HGTP_anticodon
PF00587   tRNA-synt_2b
PF07973   tRNA_SAD
PF10613   Lig_chan-Glu_bd

Interpro

IPR001320   Iontro_rcpt        + More
IPR002320   Thr-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR036621   Anticodon-bd_dom_sf       
IPR012675   Beta-grasp_dom_sf       
IPR012947   tRNA_SAD       
IPR033728   ThrRS_core       
IPR012676   TGS-like       
IPR004154   Anticodon-bd       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       
IPR006195   aa-tRNA-synth_II       
IPR004095   TGS       
IPR013087   Znf_C2H2_type       
IPR019594   Glu/Gly-bd       

SUPFAM

SSF55186   SSF55186        + More
SSF81271   SSF81271       

Gene 3D

3.10.20.30     3.40.50.800    

CDD

cd00771  ThrRS_core

ProteinModelPortal

A0A076E9E5   A0A2W1B5Q5   A0A0F7QEH8   A0A2A4J494   A0A1B3B706   A0A1B3P5I3   + More
A0A0F7QED4   A0A0U3C1E6   A0A076E9D7   E5FIA9   A0A3S2LDH7   A0A2W1BCP8   A0A2H1VKZ8   A0A2A4JCF7   A0A194QGN2   A0A3G6V7H3   A0A3S2NZD5   A0A194QX34   A0A140G9H4   A0A2Z5U789   A0A0S1TK63   A0A2K8GL81   A0A223HCY2   A0A0V0J280   A0A0L7K3L2   A0A345BF19   A0A0L7LEV9   A0A0K8TUC1   A0A075T816   A0A2A4JCR5   A0A2K8GKY9   A0A2W1BDU9   A0A140G9H3   A0A2K8GL77   A0A212FC55   A0A0F7QK07   A0A0K8TUX6   A0A3G6V6P1   H9A5R5   A0A223HDB0   A0A345BF26   A0A223HCY4   A0A1Q1PP74   A0A2P8YXT7   A0A2P8XXS9   A0A2P8YXT1   A0A1W6L166   A0A067QZN3   H9JCP4   A0A076E9D8   A0A1J1IJ30   A0A2P8YXS4   A0A1B3B7C4   A0A2H1WW77   A0A2J7QJP1   A0A3Q8HDA9   A0A0M3SBL7   A0A0F7QIG2   A0A067R2S3   A0A0L7LEE1   A0A146JYY8   D6X2Y3   A0A1Q1PP98   A0A0K8TUD4   A0A2K8GL75   H9A5R2   A0A223HDB2   A0A076E9E7   A0A223HCX7   A0A3S2L3E3   A0A195CN68   A0A310SDV6   A0A2A4IYY8   A0A067QXL6   A0A1J0KKM2   R9PST2   A0A1J0KKK9   A0A2H1VST4   A0A139WP17   A0A0S3J2Z8   A0A151HZ22   E2B852   A0A3G6V787   A0A386H9K5   A0A1B3B728   A0A151JV83   A0A1B1FKH3   A0A0S1TQ33   A0A345BF17   A0A345BF14   A0A084WNB9   A0A0C5DMP4   A0A182I3C0   A0A182TM62   Q7PT48  

PDB

4UQQ     E-value=0.0155703,     Score=87

KEGG

101737230    no KO assigned | (RefSeq) glutamate receptor ionotropic, kainate 2-like

GO

GO:0016021   GO:0004970   GO:0006435   GO:0004829   GO:0005737   GO:0005524   GO:0003676   GO:0005886   GO:0004971   GO:0032281   GO:0016020   GO:0043039   GO:0000166   GO:0004812   GO:0006418   GO:0003824  

PANTHER

PTHR11451  

Length:

237

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

45.54317

Exp number, first 60 AAs:

22.80992

Total prob of N-in:

0.84017

POSSIBLE N-term signal

sequence

inside

1  -  19

TMhelix

20  -  42

outside

43  -  209

TMhelix

210  -  232

inside

233  -  237

 

 

Pi

202.894227

Theta

124.732569

Tajima's D

2.462625

CLR

0.255731

CSRT

0.938453077346133

Interpretation

Uncertain