Gene

KWMTBOMO11336  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001849

Annotation

PREDICTED:_threonine--tRNA_ligase?_cytoplasmic_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr19(+):3535865-3548647      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.466

CDS

ATGGGTGACACCGCTGCCGAAGATATCAAAAATTTAAATATAAACGAAAAGTCTAAAACGAAAGCCATGAAAGAAAAGAAAAAGAAAACTGAAGATACCAATGCAGTTTCTGAAATGAACCCATGGCCAGAGTATATACAGAAGCGTATAACATTATGGGACAAATATAAGGCGCAATATACTGAGCAGATTGCGTCTAAGCCAGATATAAGTGTTGTGGTCACATTACCTGATGGGAAGACTGTAGAAGCTAAGGCTTGGAAAACCACACCGTATGATGTTGCCAAAGGAATCAGTCAAGGTTTGGCTGACGCAACAATAATAGCCAGAGTTAACAATGAACTGTGGGATCTAGATCGGCCTCTAGAAGGAGACTGTAAGTTGGAGCTGCTAAGATGGGACAATACCGACGCACAGGCGGTCTTCTGGCATTCTTCTGCTCATATGCTGGGAGAAGCTATGGAAAGAGTGTATGGAGGATGTCTATGCTATGGGCCGCCCATAGAAGAAGGATTCTACTATGACATGTATTATCCAGAAAAAGGGATATCTTCAACAGATTTCAACGTACTAGAGGGGCTAATAAAAAAAATTGCAAAAGAAAAACAGCCCTTTGAACGCTTAGAACTGACAAAGGAACAGTTATTGGAAATGTTCGATTACAATCCATTCAAAGTTCGGATATTGAATGAGAAAGTTCAGACTCCGACGACCACTGTGTACAGGTGTGGTCCACTCATAGACTTGTGCAGGGGACCTCACGTGAGACACACGGGAAAAGTTAAAGCATTAAAAGTTACGAAGAATTCGGCAACGTACTGGGAAGGCAAAGCGGAAGCGGAGAGCTTACAGCGCGTGTACGGTATATCATTTCCGGAACCGAAACAGCTGAAGGAATGGGAGGTCATTCAAGAGGAGGCCGCGAAGCGTGACCACAGAAAGATTGGAAGGGAACAAGAGTTATTCTTCTTCCACGAACTGTCTCCCGGCTCGTGTTTCTTCCAGCCACGCGGAGCTCACATTTACAACACACTCGTGAATTTCATTAAAGAACAATACAGGTCCAGAGGATTCCATGAAGTGGTGACCCCGAACATGTACAATGCCAAGCTGTGGCAGACCTCGGGTCACTGGGCTCACTACGCTGAAAACATGTTCTCGTTCGACGTTGAAAAGGAAACGTTCGCTTTGAAACCGATGAACTGTCCCGGACATTGCCTGATGTTCGACAACCGCACGAGGTCGTGGCGCGAGTTGCCGCTTCGCTTGGCCGACTTCGGCGTGCTGCACCGCAACGAGCTGAGCGGCGCGCTCACCGGCCTCACGCGCGTGCGGCGCTTCCAGCAGGACGACGCGCACATCTTCTGCGCGCCGCAACAAATCGAGGCCGAGATTGTCGGCTGCCTTGAGTTCTTGAAGTGTGTGTACTCCACTTTCGGTTTCACGTTCCAATTAAAACTCTCGACCAGGCCAGAGAAATACCTCGGAGACTTAGAGACCTGGAACCAGGCTGAAAAGGCTCTAGAAGATTCTCTGAACAAATTCGGCAAACCGTGGCAGTTGAACCCCGGCGATGGTGCGTTCTACGGGCCCAAGATCGACATCACGATACAGGACGCGTTGAGGCGCTCCCACCAATGCGCCACCATACAGCTGGACTTCCAGCTGCCCGAGAGATTCAACTTGACTTACGTTAGCGAGACCGGGGACAAGAAGCGTCCCGTGATCATTCACCGCGCGGTGCTGGGCTCTGTGGAGCGCATGGTGGCCATCCTCAGCGAGTCGTACGCCGGCAAGTGGCCGCTGTGGCTCAGCCCGCGCCAGCTGCGCGTCGTGCCGGTCGGGCCCGCCTTCGACGACTACGCCGTGCAGGTGAATGATAAACTATTCGCTGCCGGCTTCATGTCCGAGGTAGACACGGACGCGGGAGACACCCTCAACAAGAAAGTGAGAAATGCTCAGCTCGCCCAGTTCAACTATATATTAGTTGTGGGAGAGCGGGAGAAGAATTCCGGGACGGTGAACGTCCGCACCCGGGACAACAAGGTCCACGGCGAGATGTCTGTGGAGGCGCTCATCGAACACCTCAACAACTTGGTCAGGGAGAAGAAGCTATCCGAGGACAGTGAACTGCTCAAGTGA

Protein

MGDTAAEDIKNLNINEKSKTKAMKEKKKKTEDTNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEKETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPQQIEAEIVGCLEFLKCVYSTFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYVSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLSEDSELLK

Uniprot

H9IX66   A0A212FC47   A0A2H1VL02   A0A194QX34   A0A2W1B7R1   A0A2A4J3Q0   + More
A0A0K8TP76   A0A2A3EUN5   A0A139WE51   A0A0L0CML0   A0A1I8N7X4   Q17LW8   A0A1S4EY74   A0A411G7A6   A0A1I8N7W2   T1PGK8   N6T335   A0A1I8N7X5   A0A154P787   A0A023EW02   A0A0N0BDY3   U5EYI4   A0A087ZP92   A0A182G2U5   A0A232ET46   A0A1B0FEH2   K7J9D2   A0A0J7KTH5   A0A1A9V891   A0A151HY27   A0A1I8NNB4   A0A0Q9WLU2   A0A0A1WY78   A0A1I8NNB5   A0A026W835   A0A0P8XHT4   A0A0A1XDB1   A0A0L7RCK3   A0A3B0K1J3   A0A0C9RLR0   A0A1I8NNB1   W8BRI5   A0A1A9WKK4   A0A336L5Z5   A0A1J1IP91   A0A034VIT8   B3MVH3   A0A1Q3FAE4   A0A336LVY1   B4LSF9   A0A0Q9WAX7   W8BYM5   A0A3B0K4E5   A0A034VKS3   A0A3B0JWF5   A0A0K8VGT7   F4W5M6   A0A158NSE0   E2BU22   A0A0Q5WB66   A0A0R3NRN6   A0A3B0JHQ5   Q29N74   B4G857   A0A195ET07   B3N3W9   A0A182QRI4   A0A310SF96   A0A0R1DRF8   Q7PWK7   A0A182LMR2   A0A1B6KDY0   A0A0Q9X3X2   B4P1Y9   A0A1S4GZL7   A0A1W4UYB7   A0A182XNS7   A0A1S4H0E6   A0A182I7D2   A0A182V786   Q8IGC5   A0A0M4EPR8   A0A1A9XEQ0   A0A182W6C1   E2AVW4   A0A2M4BFR9   A0A2M4BGD5   A0A2M4BFR3   A0A084VL21   A0A0J9TLV6   A0A2M3Z1K4   A0A1B6LBV7   B4KJL1   A0A2M3Z1M8   A0A182TJM8   A0A182J4D6   A0A1W4VBY8   A0A182MZ47   A0A182PDV7   Q8IP94  

Pubmed

19121390    22118469    26354079    28756777    26369729    18362917    + More
19820115    26108605    25315136    17510324    23537049    24945155    26483478    28648823    20075255    17994087    25830018    24508170    30249741    24495485    25348373    21719571    21347285    20798317    15632085    17550304    12364791    20966253    24438588    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01018233    BABH01018234    BABH01018235    AGBW02009222    OWR51316.1    ODYU01003127    + More
SOQ41497.1    KQ461073    KPJ09520.1    KZ150379    PZC71101.1    NWSH01003358    PCG66489.1    GDAI01001903    JAI15700.1    KZ288186    PBC34771.1    KQ971355    KYB26192.1    JRES01000186    KNC33516.1    CH477210    EAT47704.1    MH365908    QBB01717.1    KA647275    AFP61904.1    APGK01045809    KB741039    KB632188    ENN74529.1    ERL89808.1    KQ434829    KZC07732.1    GAPW01000286    JAC13312.1    KQ435847    KOX71118.1    GANO01001984    JAB57887.1    JXUM01140114    KQ569008    KXJ68798.1    NNAY01002341    OXU21512.1    CCAG010005473    LBMM01003365    KMQ93611.1    KQ976730    KYM76477.1    CH940649    KRF81854.1    GBXI01010666    JAD03626.1    KK107347    QOIP01000007    EZA52272.1    RLU20557.1    CH902624    KPU74363.1    GBXI01005347    JAD08945.1    KQ414616    KOC68476.1    OUUW01000004    SPP79829.1    GBYB01009210    JAG78977.1    GAMC01004808    JAC01748.1    UFQS01001849    UFQT01001849    SSX12551.1    SSX31994.1    CVRI01000055    CRL01372.1    GAKP01016533    JAC42419.1    EDV33238.1    GFDL01010499    JAV24546.1    UFQT01000238    SSX22206.1    EDW64781.1    KRF81853.1    GAMC01004807    JAC01749.1    SPP79831.1    GAKP01016532    JAC42420.1    SPP79830.1    GDHF01021456    GDHF01014180    GDHF01003516    JAI30858.1    JAI38134.1    JAI48798.1    GL887655    EGI70523.1    ADTU01024860    GL450575    EFN80796.1    CH954177    KQS70532.1    CH379060    KRT03873.1    SPP79832.1    EAL33469.2    CH479180    EDW28537.1    KQ981993    KYN31047.1    EDV58821.1    AXCN02000794    KQ769179    OAD52899.1    CM000157    KRJ97609.1    AAAB01008984    EAA14818.5    GEBQ01030341    JAT09636.1    CH933807    KRG02699.1    EDW88160.1    APCN01003380    BT001848    AAN71609.1    CP012523    ALC38887.1    GL443213    EFN62386.1    GGFJ01002726    MBW51867.1    GGFJ01002727    MBW51868.1    GGFJ01002733    MBW51874.1    ATLV01014397    KE524970    KFB38665.1    CM002910    KMY89880.1    GGFM01001666    MBW22417.1    GEBQ01031976    GEBQ01018811    JAT08001.1    JAT21166.1    EDW11456.2    GGFM01001653    MBW22404.1    AE014134    AAF53167.1    AAN10805.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000218220    UP000242457    UP000007266    + More
UP000037069    UP000095301    UP000008820    UP000019118    UP000030742    UP000076502    UP000053105    UP000005203    UP000069940    UP000249989    UP000215335    UP000092444    UP000002358    UP000036403    UP000078200    UP000078540    UP000095300    UP000008792    UP000053097    UP000279307    UP000007801    UP000053825    UP000268350    UP000091820    UP000183832    UP000007755    UP000005205    UP000008237    UP000008711    UP000001819    UP000008744    UP000078541    UP000075886    UP000002282    UP000007062    UP000075882    UP000009192    UP000192221    UP000076407    UP000075840    UP000075903    UP000092553    UP000092443    UP000075920    UP000000311    UP000030765    UP000075902    UP000075880    UP000075884    UP000075885    UP000000803   

PRIDE

H9IX66    Q8IGC5    Q8IP94   

Pfam

PF07973   tRNA_SAD        + More
PF02824   TGS
PF00587   tRNA-synt_2b
PF03129   HGTP_anticodon
PF00060   Lig_chan
PF00096   zf-C2H2
PF15393   DUF4615
PF00378   ECH_1
PF08320   PIG-X

Interpro

IPR036621   Anticodon-bd_dom_sf        + More
IPR012675   Beta-grasp_dom_sf       
IPR012947   tRNA_SAD       
IPR002320   Thr-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       
IPR006195   aa-tRNA-synth_II       
IPR004095   TGS       
IPR012676   TGS-like       
IPR033728   ThrRS_core       
IPR004154   Anticodon-bd       
IPR001320   Iontro_rcpt       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR029274   DUF4615       
IPR001753   Enoyl-CoA_hydra/iso       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR013233   PIG-X/PBN1       
IPR036282   Glutathione-S-Trfase_C_sf       

SUPFAM

SSF81271   SSF81271        + More
SSF55186   SSF55186       
SSF57667   SSF57667       
SSF52096   SSF52096       
SSF47616   SSF47616       

Gene 3D

3.10.20.30     3.40.50.800    

CDD

cd00771  ThrRS_core

ProteinModelPortal

H9IX66   A0A212FC47   A0A2H1VL02   A0A194QX34   A0A2W1B7R1   A0A2A4J3Q0   + More
A0A0K8TP76   A0A2A3EUN5   A0A139WE51   A0A0L0CML0   A0A1I8N7X4   Q17LW8   A0A1S4EY74   A0A411G7A6   A0A1I8N7W2   T1PGK8   N6T335   A0A1I8N7X5   A0A154P787   A0A023EW02   A0A0N0BDY3   U5EYI4   A0A087ZP92   A0A182G2U5   A0A232ET46   A0A1B0FEH2   K7J9D2   A0A0J7KTH5   A0A1A9V891   A0A151HY27   A0A1I8NNB4   A0A0Q9WLU2   A0A0A1WY78   A0A1I8NNB5   A0A026W835   A0A0P8XHT4   A0A0A1XDB1   A0A0L7RCK3   A0A3B0K1J3   A0A0C9RLR0   A0A1I8NNB1   W8BRI5   A0A1A9WKK4   A0A336L5Z5   A0A1J1IP91   A0A034VIT8   B3MVH3   A0A1Q3FAE4   A0A336LVY1   B4LSF9   A0A0Q9WAX7   W8BYM5   A0A3B0K4E5   A0A034VKS3   A0A3B0JWF5   A0A0K8VGT7   F4W5M6   A0A158NSE0   E2BU22   A0A0Q5WB66   A0A0R3NRN6   A0A3B0JHQ5   Q29N74   B4G857   A0A195ET07   B3N3W9   A0A182QRI4   A0A310SF96   A0A0R1DRF8   Q7PWK7   A0A182LMR2   A0A1B6KDY0   A0A0Q9X3X2   B4P1Y9   A0A1S4GZL7   A0A1W4UYB7   A0A182XNS7   A0A1S4H0E6   A0A182I7D2   A0A182V786   Q8IGC5   A0A0M4EPR8   A0A1A9XEQ0   A0A182W6C1   E2AVW4   A0A2M4BFR9   A0A2M4BGD5   A0A2M4BFR3   A0A084VL21   A0A0J9TLV6   A0A2M3Z1K4   A0A1B6LBV7   B4KJL1   A0A2M3Z1M8   A0A182TJM8   A0A182J4D6   A0A1W4VBY8   A0A182MZ47   A0A182PDV7   Q8IP94  

PDB

4HWT     E-value=0,     Score=1679

KEGG

101740700    K01868 threonyl-tRNA synthetase [EC:6.1.1.3] | (RefSeq) threonine--tRNA ligase, cytoplasmic

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0005737   GO:0004829   GO:0006435   GO:0016021   GO:0004970   GO:0003676   GO:0006506   GO:0005789   GO:0005739   GO:0016876   GO:0043039   GO:0000166   GO:0004812   GO:0006418   GO:0003824  

PANTHER

PTHR11451  

Length:

713

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00173

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00032

outside

1  -  713

 

 

Pi

265.427409

Theta

169.471796

Tajima's D

1.832296

CLR

0.010048

CSRT

0.851657417129144

Interpretation

Uncertain