Gene

KWMTBOMO11335

Pre Gene Modal

BGIBMGA001848

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_glutamate_receptor_ionotropic?_kainate_2-like_[Bombyx_mori]

Location

Bomo_Chr19(+):3528355-3533747      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 0.956

CDS

ATGGCGTTGTACGCTGCCTACTCTGCTAACATCGTGGTGTTGCTCCAGGCGCCTTCCAATTCCATCACGAGCCTTGCGCAGCTGGCCGCATCCAAGGTCACGTTGGCTGCTAACGATGTGGACTATAATCGATTTGTTTTTAATGACGACATTGACCCTCTACACGTTTCTGTGCACAAAACGATCATCCCTGACAACGGAAAGCCACGGTTCCACGATATTGTAGATGGAGTCGAGAGGATTCGAAAGGGTTTATTCGCTTTCCACTCGATAGTCGAGCCGGTCTATCGGCGTATTGAGGAAACATTTCAGGAAAACGAAAAATGTGATCTAACCGAAGTGGACTATATAAACAGCTTAGATGCTTTCACGCCGGTCAAGAAAGATTCTCCGTATTTGGAACTGCTTAGAGTTTCTTACAAACACGTGCGTGAAGTTGGTATTCAAGCGGCTTTGAACAAGCGCTATCAAGTACCCAAGCCTCGATGCGAGAGCAAAGCGGTCGCATTCAGCAGTGTCGGTCTTCTAGACCTTCGACCGGTCCTTATTATGATGATGTACGGCGTGGCTTTATCTCTAGCGATATTATTAGCGGAAATCATTGTTTTCAAAATAAAAGAATACAACTGTAATTTTCATTAG

Protein

MALYAAYSANIVVLLQAPSNSITSLAQLAASKVTLAANDVDYNRFVFNDDIDPLHVSVHKTIIPDNGKPRFHDIVDGVERIRKGLFAFHSIVEPVYRRIEETFQENEKCDLTEVDYINSLDAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPKPRCESKAVAFSSVGLLDLRPVLIMMMYGVALSLAILLAEIIVFKIKEYNCNFH

Uniprot

A0A0S1TK63   A0A0F7QED4   A0A1B3B706   A0A0U3C1E6   A0A2W1B5Q5   A0A1B3P5I3   + More
A0A076E9E5   A0A0F7QEH8   A0A2A4J494   A0A2A4JCF7   A0A3S2LDH7   A0A2W1BCP8   A0A2H1VKZ8   E5FIA9   A0A076E9D7   A0A194QGN2   A0A3S2NZD5   A0A223HCY2   A0A3G6V7H3   A0A194QX34   A0A140G9H4   A0A0V0J280   A0A345BF19   A0A2Z5U789   A0A0L7K3L2   A0A0K8TUC1   A0A075T816   A0A2K8GKY9   A0A0L7LEV9   A0A2A4JCR5   A0A2W1BDU9   A0A345BF26   A0A2K8GL77   A0A140G9H3   A0A0F7QK07   A0A3G6V6P1   A0A212FC55   A0A0K8TUX6   A0A223HDB0   H9A5R5   A0A223HCY4   A0A1Q1PP74   A0A0L7LEE1   A0A3Q8HDA9   A0A1W6L166   A0A1J1IJ30   A0A076E9D8   A0A2P8YXT1   H9A5R2   A0A0M3SBL7   A0A067R2S3   A0A345BF17   A0A0C5DMP4   A0A1Q1PP98   A0A1B3B7C4   A0A0F7QIG2   A0A2P8XXS9   A0A223HDB2   H9JCP4   A0A310SDV6   A0A2K8GL75   A0A0K8TUD4   A0A223HCX7   A0A076E9E7   Q16HB4   Q16HB2   A0A3S2L3E3   A0A1B3B728   A0A386H9K5   W5JST1   A0A3G6V787   A0A067QZN3   A0A146JYY8   A0A0S3J2Z8   A0A2A4IYY8   A0A2P8YXS4   A0A2P8YXT7   A0A2H1VST4   D6X2Y3   A0A140G9H5   A0A1J0KKK8   E5FIB0   A0A0S1TQ33   A0A158P2N0   A0A1B1FKH3   A0A1S5VFU7   A0A0F7QIG0   A0A2J7QJP1   A0A345BF14   A0A182FF56   R9PST2   A0A067QXL6   A0A0B5A1Z7   A0A2D0WKS5   Q178H7  

Pubmed

26812239    25803580    26657286    28756777    27538507    24998398    + More
21091811    26354079    28150741    30465940    27004525    27006164    29727827    26227816    26017144    25027790    28736530    29375398    22118469    22363688    29403074    26265180    24845553    25665775    27171401    19121390    17510324    20920257    23761445    26626891    18362917    19820115    27836740    21347285    28187311    23517120   

EMBL

KR912020    ALM24947.1    LC017792    BAR64806.1    KT588092    AOE48002.1    + More
KP975109    ALT31628.1    KZ150379    PZC71098.1    KX655903    AOG12852.1    KF487730    AII01128.1    LC017791    BAR64805.1    NWSH01003358    PCG66488.1    NWSH01001928    PCG69641.1    RSAL01000205    RVE44372.1    PZC71097.1    ODYU01003127    SOQ41495.1    HM562973    ADR64684.1    KF487720    AII01118.1    KQ459053    KPJ04095.1    RSAL01000016    RVE53014.1    KY283573    AST36233.1    MH193960    AZB49406.1    KQ461073    KPJ09520.1    KU702626    AMM70653.1    GDKB01000021    JAP38475.1    MG820672    AXF48843.1    AP017504    BBB06806.1    JTDY01011817    KOB52386.1    GCVX01000141    JAI18089.1    KF768728    AIG51922.1    KX585402    ARO70295.1    JTDY01001415    KOB73914.1    PCG69639.1    PZC71096.1    MG820679    AXF48850.1    KY225534    ARO70546.1    KU702625    AMM70652.1    LC017793    BAR64807.1    MH193967    AZB49413.1    AGBW02009222    OWR51314.1    GCVX01000137    JAI18093.1    KY283703    AST36362.1    JN836715    AFC91755.2    KY283574    AST36234.1    KY325454    AQM73615.1    KOB73913.1    MF625620    AXY83447.1    KX609444    KB465935    ARN17851.1    RLZ02208.1    CVRI01000054    CRL00245.1    KF487721    AII01119.1    PYGN01000296    PSN49051.1    JN836712    AFC91752.1    KP843211    ALD51348.1    KK852952    KDR13328.1    MG820670    AXF48841.1    KP296776    AJO62240.1    KY325456    AQM73617.1    KU291857    AOE48107.1    LC017794    BAR64808.1    PYGN01001184    PSN36819.1    KY283705    AST36364.1    BABH01034648    GGOB01000048    MCH29444.1    KY225535    ARO70547.1    GCVX01000138    JAI18092.1    KY283576    AST36236.1    KF487731    AII01129.1    CH478187    EAT33627.1    EAT33629.1    RSAL01000189    RVE44730.1    KT588085    AOE47995.1    MG546648    AYD42271.1    ADMH02000549    ETN65970.1    MH193962    AZB49408.1    KK852854    KDR14986.1    GEDO01000005    JAP88621.1    KT381535    ALR72541.1    NWSH01004502    PCG65035.1    PSN49053.1    PSN49052.1    ODYU01004051    SOQ43532.1    KQ971372    EFA10663.2    KU702627    AMM70654.1    KX290685    APC94256.1    HM562974    ADR64685.1    KR912013    ALM24940.1    ADTU01007028    KT268301    ANQ46495.1    KY445567    AQN78502.1    LC017789    BAR64803.1    NEVH01013550    PNF28811.1    MG820667    AXF48838.1    GABX01000012    JAA74507.1    KDR14985.1    KJ542754    AJD81638.1    KY019179    ARB05668.1    CH477363    EAT42606.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000037510    UP000007151    + More
UP000183832    UP000245037    UP000027135    UP000005204    UP000008820    UP000000673    UP000007266    UP000005205    UP000235965    UP000069272   

PRIDE

H9JCP4   

Pfam

PF00060   Lig_chan        + More
PF02824   TGS
PF03129   HGTP_anticodon
PF00587   tRNA-synt_2b
PF07973   tRNA_SAD
PF10613   Lig_chan-Glu_bd

Interpro

IPR001320   Iontro_rcpt        + More
IPR002320   Thr-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR036621   Anticodon-bd_dom_sf       
IPR012675   Beta-grasp_dom_sf       
IPR012947   tRNA_SAD       
IPR033728   ThrRS_core       
IPR012676   TGS-like       
IPR004154   Anticodon-bd       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       
IPR006195   aa-tRNA-synth_II       
IPR004095   TGS       
IPR013087   Znf_C2H2_type       
IPR019594   Glu/Gly-bd       

SUPFAM

SSF55186   SSF55186        + More
SSF81271   SSF81271       

Gene 3D

3.10.20.30     3.40.50.800    

CDD

cd00771  ThrRS_core

ProteinModelPortal

A0A0S1TK63   A0A0F7QED4   A0A1B3B706   A0A0U3C1E6   A0A2W1B5Q5   A0A1B3P5I3   + More
A0A076E9E5   A0A0F7QEH8   A0A2A4J494   A0A2A4JCF7   A0A3S2LDH7   A0A2W1BCP8   A0A2H1VKZ8   E5FIA9   A0A076E9D7   A0A194QGN2   A0A3S2NZD5   A0A223HCY2   A0A3G6V7H3   A0A194QX34   A0A140G9H4   A0A0V0J280   A0A345BF19   A0A2Z5U789   A0A0L7K3L2   A0A0K8TUC1   A0A075T816   A0A2K8GKY9   A0A0L7LEV9   A0A2A4JCR5   A0A2W1BDU9   A0A345BF26   A0A2K8GL77   A0A140G9H3   A0A0F7QK07   A0A3G6V6P1   A0A212FC55   A0A0K8TUX6   A0A223HDB0   H9A5R5   A0A223HCY4   A0A1Q1PP74   A0A0L7LEE1   A0A3Q8HDA9   A0A1W6L166   A0A1J1IJ30   A0A076E9D8   A0A2P8YXT1   H9A5R2   A0A0M3SBL7   A0A067R2S3   A0A345BF17   A0A0C5DMP4   A0A1Q1PP98   A0A1B3B7C4   A0A0F7QIG2   A0A2P8XXS9   A0A223HDB2   H9JCP4   A0A310SDV6   A0A2K8GL75   A0A0K8TUD4   A0A223HCX7   A0A076E9E7   Q16HB4   Q16HB2   A0A3S2L3E3   A0A1B3B728   A0A386H9K5   W5JST1   A0A3G6V787   A0A067QZN3   A0A146JYY8   A0A0S3J2Z8   A0A2A4IYY8   A0A2P8YXS4   A0A2P8YXT7   A0A2H1VST4   D6X2Y3   A0A140G9H5   A0A1J0KKK8   E5FIB0   A0A0S1TQ33   A0A158P2N0   A0A1B1FKH3   A0A1S5VFU7   A0A0F7QIG0   A0A2J7QJP1   A0A345BF14   A0A182FF56   R9PST2   A0A067QXL6   A0A0B5A1Z7   A0A2D0WKS5   Q178H7  

KEGG

101737230    no KO assigned | (RefSeq) glutamate receptor ionotropic, kainate 2-like

GO

GO:0016021   GO:0004970   GO:0006435   GO:0004829   GO:0005737   GO:0005524   GO:0003676   GO:0016020   GO:0005886   GO:0004971   GO:0032281  

PANTHER

PTHR11451  

Length:

213

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.29939

Exp number, first 60 AAs:

0.66252

Total prob of N-in:

0.05918

outside

1  -  180

TMhelix

181  -  203

inside

204  -  213

 

 

Pi

27.113652

Theta

15.217131

Tajima's D

-2.311873

CLR

0.023749

CSRT

0.00264986750662467

Interpretation

Possibly Positive selection