SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11335
Pre Gene Modal
BGIBMGA001848
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_glutamate_receptor_ionotropic?_kainate_2-like_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 0.956
 

Sequence

CDS
ATGGCGTTGTACGCTGCCTACTCTGCTAACATCGTGGTGTTGCTCCAGGCGCCTTCCAATTCCATCACGAGCCTTGCGCAGCTGGCCGCATCCAAGGTCACGTTGGCTGCTAACGATGTGGACTATAATCGATTTGTTTTTAATGACGACATTGACCCTCTACACGTTTCTGTGCACAAAACGATCATCCCTGACAACGGAAAGCCACGGTTCCACGATATTGTAGATGGAGTCGAGAGGATTCGAAAGGGTTTATTCGCTTTCCACTCGATAGTCGAGCCGGTCTATCGGCGTATTGAGGAAACATTTCAGGAAAACGAAAAATGTGATCTAACCGAAGTGGACTATATAAACAGCTTAGATGCTTTCACGCCGGTCAAGAAAGATTCTCCGTATTTGGAACTGCTTAGAGTTTCTTACAAACACGTGCGTGAAGTTGGTATTCAAGCGGCTTTGAACAAGCGCTATCAAGTACCCAAGCCTCGATGCGAGAGCAAAGCGGTCGCATTCAGCAGTGTCGGTCTTCTAGACCTTCGACCGGTCCTTATTATGATGATGTACGGCGTGGCTTTATCTCTAGCGATATTATTAGCGGAAATCATTGTTTTCAAAATAAAAGAATACAACTGTAATTTTCATTAG
Protein
MALYAAYSANIVVLLQAPSNSITSLAQLAASKVTLAANDVDYNRFVFNDDIDPLHVSVHKTIIPDNGKPRFHDIVDGVERIRKGLFAFHSIVEPVYRRIEETFQENEKCDLTEVDYINSLDAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPKPRCESKAVAFSSVGLLDLRPVLIMMMYGVALSLAILLAEIIVFKIKEYNCNFH

Summary

EMBL
KR912020    ALM24947.1    LC017792    BAR64806.1    KT588092    AOE48002.1    + More
KP975109    ALT31628.1    KZ150379    PZC71098.1    KX655903    AOG12852.1    KF487730    AII01128.1    LC017791    BAR64805.1    NWSH01003358    PCG66488.1    NWSH01001928    PCG69641.1    RSAL01000205    RVE44372.1    PZC71097.1    ODYU01003127    SOQ41495.1    HM562973    ADR64684.1    KF487720    AII01118.1    KQ459053    KPJ04095.1    RSAL01000016    RVE53014.1    KY283573    AST36233.1    MH193960    AZB49406.1    KQ461073    KPJ09520.1    KU702626    AMM70653.1    GDKB01000021    JAP38475.1    MG820672    AXF48843.1    AP017504    BBB06806.1    JTDY01011817    KOB52386.1    GCVX01000141    JAI18089.1    KF768728    AIG51922.1    KX585402    ARO70295.1    JTDY01001415    KOB73914.1    PCG69639.1    PZC71096.1    MG820679    AXF48850.1    KY225534    ARO70546.1    KU702625    AMM70652.1    LC017793    BAR64807.1    MH193967    AZB49413.1    AGBW02009222    OWR51314.1    GCVX01000137    JAI18093.1    KY283703    AST36362.1    JN836715    AFC91755.2    KY283574    AST36234.1    KY325454    AQM73615.1    KOB73913.1    MF625620    AXY83447.1    KX609444    KB465935    ARN17851.1    RLZ02208.1    CVRI01000054    CRL00245.1    KF487721    AII01119.1    PYGN01000296    PSN49051.1    JN836712    AFC91752.1    KP843211    ALD51348.1    KK852952    KDR13328.1    MG820670    AXF48841.1    KP296776    AJO62240.1    KY325456    AQM73617.1    KU291857    AOE48107.1    LC017794    BAR64808.1    PYGN01001184    PSN36819.1    KY283705    AST36364.1    BABH01034648    GGOB01000048    MCH29444.1    KY225535    ARO70547.1    GCVX01000138    JAI18092.1    KY283576    AST36236.1    KF487731    AII01129.1    CH478187    EAT33627.1    EAT33629.1    RSAL01000189    RVE44730.1    KT588085    AOE47995.1    MG546648    AYD42271.1    ADMH02000549    ETN65970.1    MH193962    AZB49408.1    KK852854    KDR14986.1    GEDO01000005    JAP88621.1    KT381535    ALR72541.1    NWSH01004502    PCG65035.1    PSN49053.1    PSN49052.1    ODYU01004051    SOQ43532.1    KQ971372    EFA10663.2    KU702627    AMM70654.1    KX290685    APC94256.1    HM562974    ADR64685.1    KR912013    ALM24940.1    ADTU01007028    KT268301    ANQ46495.1    KY445567    AQN78502.1    LC017789    BAR64803.1    NEVH01013550    PNF28811.1    MG820667    AXF48838.1    GABX01000012    JAA74507.1    KDR14985.1    KJ542754    AJD81638.1    KY019179    ARB05668.1    CH477363    EAT42606.1   
Pfam
PF00060   Lig_chan        + More
PF02824   TGS
PF03129   HGTP_anticodon
PF00587   tRNA-synt_2b
PF07973   tRNA_SAD
PF10613   Lig_chan-Glu_bd
Interpro
IPR001320   Iontro_rcpt        + More
IPR002320   Thr-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR036621   Anticodon-bd_dom_sf       
IPR012675   Beta-grasp_dom_sf       
IPR012947   tRNA_SAD       
IPR033728   ThrRS_core       
IPR012676   TGS-like       
IPR004154   Anticodon-bd       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       
IPR006195   aa-tRNA-synth_II       
IPR004095   TGS       
IPR013087   Znf_C2H2_type       
IPR019594   Glu/Gly-bd       
SUPFAM
SSF55186   SSF55186        + More
SSF81271   SSF81271       
Gene 3D

Ontologies

Topology

Length:
213
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.29939
Exp number, first 60 AAs:
0.66252
Total prob of N-in:
0.05918
outside
1  -  180
TMhelix
181  -  203
inside
204  -  213
 
 

Population Genetic Test Statistics

Pi
27.113652
Theta
15.217131
Tajima's D
-2.311873
CLR
0.023749
CSRT
0.00264986750662467
Interpretation
Possibly Positive selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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