Gene

KWMTBOMO11334

Annotation

PREDICTED:_probable_glutamate_receptor_[Bombyx_mori]

Location

Bomo_Chr19(+):3517205-3518277      View in EpiBrowser

Full name

Chloride channel protein      

Location in the cell

Cytoplasmic   Reliability : 1.07 Mitochondrial   Reliability : 1.144 Nuclear   Reliability : 1.546

CDS

ATGGAACTGAATCCGGGCTACAGACTGATTCAGGAGACGTACCGAGAGGACGAGAAGTGCGATCTGGTGGAAATCGATTACATTAACGAAATCGATCCCTGGGTGCCCGGACAGAAAAGGTCACCTTTCAAAGACCTATTCAAAATAAACTTCCTCAAGATCCGCGAGTCGGGAATCCAAGCGGCCATACACCACCGTCTGCACGTGCCCAAGCCCCGTTGCTCGGGAACTGTCTCCACGTTCAGTAGCGTTGGCATAACCGACATGTACCCGGCCATGCTGGCGACCTTGTATGGAATGCTGCTCGCCCCGGCCGTTTTACTTGTGGAGATAGCGCACATGAAACTGTAA

Protein

MELNPGYRLIQETYREDEKCDLVEIDYINEIDPWVPGQKRSPFKDLFKINFLKIRESGIQAAIHHRLHVPKPRCSGTVSTFSSVGITDMYPAMLATLYGMLLAPAVLLVEIAHMKL

Similarity

Belongs to the chloride channel (TC 2.A.49) family.

Uniprot

A0A3G6V6P1   A0A2A4JDY2   A0A0F7QK07   A0A075T816   A0A0K8TUX6   A0A2W1BDU9   + More
A0A2A4JCR5   A0A223HDB0   H9A5R5   A0A223HCY4   A0A2K8GKY9   A0A140G9H3   A0A3S2LDH7   A0A2K8GL77   A0A345BF26   A0A212FC55   A0A194QGN2   A0A194QX34   A0A0L7LEE1   A0A1B3B706   H9IX65   A0A0F7QEH8   A0A2A4J494   A0A1B3P5I3   A0A0U3C1E6   A0A2W1B5Q5   A0A076E9E5   A0A0L7LEV9   A0A223HCX7   A0A0F7QED4   A0A140G9H4   B0WNS7   A0A0U2SQR6   A0A1J1IJ30   H9JCP4   A0A345BF14   A0A0S1TK63   A0A2A4JCF7   A0A2W1BCP8   A0A1B3B7C4   A0A0M3SBL7   A0A2K8GKX4   A0A2Z5U789   A0A310S5X4   A0A0K8TUC1   A0A345BF19   A0A0V0J280   A0A0K8TUD4   A0A212EM21   A0A076E9D8   A0A067R2S3   A0A223HCY2   A0A1Q1PP98   A0A140G9H5   H9A5R2   A0A223HDB2   A0A2P9JY95   A0A182X3P9   A0A0F7QIG2   A0A3Q8HDA9   A0A182UU78   A0A182I3C0   A0A182TM62   E5FIA9   A0A0K8TUC6   A0A2P8XXS9   A0A182KRD1   A0A0S3J2Z8   A0A182PQE0   A0A076E9E7   D6X2Y3   Q178H7   A0A1V1WBQ2   A0A1S4FBU2   A0A2D0WKS7   A0A182GL17   A0A146JYY8   A0A1W6L166   A0A182FFC7   A0A1B3B728   A0A0N7FD62   A0A182GF22   A0A2A4IYY8   A0A386H9K5   W5JST1   A0A2K8GL75   A0A194QT07   A0A182JQ31   Q7PT48   A0A3S2L3E3   A0A182FF56   A0A2H1VKZ8   A0A194QBG6   A0A1J0KKM2   K7IYS3   A0A336M5H9  

Pubmed

30465940    25803580    25027790    26017144    28756777    28150741    + More
22363688    27006164    28736530    27004525    29375398    29727827    22118469    26354079    26227816    19121390    27538507    26657286    24998398    26812239    27171401    26265180    24845553    21091811    29403074    20966253    26626891    18362917    19820115    17510324    26483478    26164593    20920257    23761445    12364791    14747013    17210077    27836740    20075255   

EMBL

MH193967    AZB49413.1    NWSH01001928    PCG69640.1    LC017793    BAR64807.1    + More
KF768728    AIG51922.1    GCVX01000137    JAI18093.1    KZ150379    PZC71096.1    PCG69639.1    KY283703    AST36362.1    JN836715    AFC91755.2    KY283574    AST36234.1    KX585402    ARO70295.1    KU702625    AMM70652.1    RSAL01000205    RVE44372.1    KY225534    ARO70546.1    MG820679    AXF48850.1    AGBW02009222    OWR51314.1    KQ459053    KPJ04095.1    KQ461073    KPJ09520.1    JTDY01001415    KOB73913.1    KT588092    AOE48002.1    BABH01018235    BABH01018236    BABH01018237    BABH01018238    LC017791    BAR64805.1    NWSH01003358    PCG66488.1    KX655903    AOG12852.1    KP975109    ALT31628.1    PZC71098.1    KF487730    AII01128.1    KOB73914.1    KY283576    AST36236.1    LC017792    BAR64806.1    KU702626    AMM70653.1    DS232014    EDS31918.1    KP975111    ALT31630.1    CVRI01000054    CRL00245.1    BABH01034648    MG820667    AXF48838.1    KR912020    ALM24947.1    PCG69641.1    PZC71097.1    KU291857    AOE48107.1    KP843211    ALD51348.1    KX585403    ARO70296.1    AP017504    BBB06806.1    GGOB01000054    MCH29450.1    GCVX01000141    JAI18089.1    MG820672    AXF48843.1    GDKB01000021    JAP38475.1    GCVX01000138    JAI18092.1    AGBW02013944    OWR42528.1    KF487721    AII01119.1    KK852952    KDR13328.1    KY283573    AST36233.1    KY325456    AQM73617.1    KU702627    AMM70654.1    JN836712    AFC91752.1    KY283705    AST36364.1    KY817085    AVH87301.1    LC017794    BAR64808.1    MF625620    AXY83447.1    APCN01000204    HM562973    ADR64684.1    GCVX01000136    JAI18094.1    PYGN01001184    PSN36819.1    KT381535    ALR72541.1    KF487731    AII01129.1    KQ971372    EFA10663.2    CH477363    EAT42606.1    GENK01000124    JAV45789.1    KY019178    ARB05667.1    JXUM01071488    KQ562666    KXJ75363.1    GEDO01000005    JAP88621.1    KX609444    KB465935    ARN17851.1    RLZ02208.1    KT588085    AOE47995.1    KP963684    ALG36132.1    JXUM01059078    JXUM01059079    JXUM01059080    JXUM01059081    JXUM01059082    KQ562034    KXJ76850.1    NWSH01004502    PCG65035.1    MG546648    AYD42271.1    ADMH02000549    ETN65970.1    KY225535    ARO70547.1    KQ461155    KPJ08135.1    AAAB01008807    EAA04525.5    RSAL01000189    RVE44730.1    ODYU01003127    SOQ41495.1    KQ459232    KPJ02802.1    KX290686    APC94257.1    UFQT01000467    SSX24611.1   

Proteomes

UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000005204    UP000002320    UP000183832    UP000027135    UP000076407    UP000075903    UP000075840    UP000075902    UP000245037    UP000075882    UP000075885    UP000007266    UP000008820    UP000069940    UP000249989    UP000069272    UP000000673    UP000075881    UP000007062    UP000002358   

PRIDE

H9IX65    H9JCP4   

Pfam

PF00060   Lig_chan        + More
PF02824   TGS
PF03129   HGTP_anticodon
PF00587   tRNA-synt_2b
PF07973   tRNA_SAD
PF10613   Lig_chan-Glu_bd
PF13639   zf-RING_2
PF00654   Voltage_CLC
PF00571   CBS

Interpro

IPR001320   Iontro_rcpt        + More
IPR013087   Znf_C2H2_type       
IPR002320   Thr-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR036621   Anticodon-bd_dom_sf       
IPR012675   Beta-grasp_dom_sf       
IPR012947   tRNA_SAD       
IPR033728   ThrRS_core       
IPR012676   TGS-like       
IPR004154   Anticodon-bd       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       
IPR006195   aa-tRNA-synth_II       
IPR004095   TGS       
IPR019594   Glu/Gly-bd       
IPR001841   Znf_RING       
IPR013083   Znf_RING/FYVE/PHD       
IPR000644   CBS_dom       
IPR001807   Cl-channel_volt-gated       
IPR014743   Cl-channel_core       

SUPFAM

SSF55186   SSF55186        + More
SSF81271   SSF81271       
SSF81340   SSF81340       

Gene 3D

3.10.20.30     3.40.50.800     3.30.40.10     1.10.3080.10    

CDD

cd00771  ThrRS_core

ProteinModelPortal

A0A3G6V6P1   A0A2A4JDY2   A0A0F7QK07   A0A075T816   A0A0K8TUX6   A0A2W1BDU9   + More
A0A2A4JCR5   A0A223HDB0   H9A5R5   A0A223HCY4   A0A2K8GKY9   A0A140G9H3   A0A3S2LDH7   A0A2K8GL77   A0A345BF26   A0A212FC55   A0A194QGN2   A0A194QX34   A0A0L7LEE1   A0A1B3B706   H9IX65   A0A0F7QEH8   A0A2A4J494   A0A1B3P5I3   A0A0U3C1E6   A0A2W1B5Q5   A0A076E9E5   A0A0L7LEV9   A0A223HCX7   A0A0F7QED4   A0A140G9H4   B0WNS7   A0A0U2SQR6   A0A1J1IJ30   H9JCP4   A0A345BF14   A0A0S1TK63   A0A2A4JCF7   A0A2W1BCP8   A0A1B3B7C4   A0A0M3SBL7   A0A2K8GKX4   A0A2Z5U789   A0A310S5X4   A0A0K8TUC1   A0A345BF19   A0A0V0J280   A0A0K8TUD4   A0A212EM21   A0A076E9D8   A0A067R2S3   A0A223HCY2   A0A1Q1PP98   A0A140G9H5   H9A5R2   A0A223HDB2   A0A2P9JY95   A0A182X3P9   A0A0F7QIG2   A0A3Q8HDA9   A0A182UU78   A0A182I3C0   A0A182TM62   E5FIA9   A0A0K8TUC6   A0A2P8XXS9   A0A182KRD1   A0A0S3J2Z8   A0A182PQE0   A0A076E9E7   D6X2Y3   Q178H7   A0A1V1WBQ2   A0A1S4FBU2   A0A2D0WKS7   A0A182GL17   A0A146JYY8   A0A1W6L166   A0A182FFC7   A0A1B3B728   A0A0N7FD62   A0A182GF22   A0A2A4IYY8   A0A386H9K5   W5JST1   A0A2K8GL75   A0A194QT07   A0A182JQ31   Q7PT48   A0A3S2L3E3   A0A182FF56   A0A2H1VKZ8   A0A194QBG6   A0A1J0KKM2   K7IYS3   A0A336M5H9  

KEGG

101737378    no KO assigned | (RefSeq) probable glutamate receptor

GO

GO:0016021   GO:0004970   GO:0003676   GO:0006435   GO:0004829   GO:0005737   GO:0005524   GO:0005886   GO:0004971   GO:0032281   GO:0005247   GO:0016020  

PANTHER

PTHR11451  

Subcellular location

Membrane  

Length:

116

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.38886

Exp number, first 60 AAs:

0.00063

Total prob of N-in:

0.13632

outside

1  -  89

TMhelix

90  -  112

inside

113  -  116

 

 

Pi

230.152305

Theta

178.64853

Tajima's D

0.907035

CLR

0

CSRT

0.632318384080796

Interpretation

Uncertain