Silkworm Genome Informatics Database

Gene

KWMTBOMO11324

Pre Gene Modal

BGIBMGA001980

Annotation

PREDICTED:_zinc_finger_SWIM_domain-containing_protein_6-like_[Bombyx_mori]

Location

Bomo_Chr19(-):3290218-3290980 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.497

CDS

ATGTCGCCGCGCGCATGCTGCCGGCCGCGCGCCCCGCCGACCCTACTCGACATCACCGCCAAGATAGTGGCCGCGAACATTCCCTTTCAGCGGATCGAGGAGCGCTACGAACGCATCCCGGAACCGGTACAACGTCGTGTCGTGTACTGGTCGTTCCCGCGGGACGAGCGAGACATCTGCATGTACTCGTCGTTAGCACGGGCGCCTCCCGACGACCATCGCAACATCGCCTTCTGCCGCGGCCTGAAGCTGCTCGAAGCCGGCTGCGTGGAGAACGTGCTGCAAGTCGGACTGATGATTGGCTCGGACGAAAGGTTCCGGGCCGCTCGGCCGTGGCCCTTATCTGGTTGCGGTATCATCGTTCCGGTACTAGAACTAAAGTTTAATCGATTCCCGGCAACATATTATTCACGATTTCCACCCGACACCATATCGGAGCGATTACGTTCCCGGAGGCAGCCGGCTTCATAG

Protein

MSPRACCRPRAPPTLLDITAKIVAANIPFQRIEERYERIPEPVQRRVVYWSFPRDERDICMYSSLARAPPDDHRNIAFCRGLKLLEAGCVENVLQVGLMIGSDERFRAARPWPLSGCGIIVPVLELKFNRFPATYYSRFPPDTISERLRSRRQPAS

Uniprot

A0A139WEI1 A0A1Y1JYD8 A0A1Y1K3Y3 A0A3Q3IB98 A0A3Q3IBA4 A0A3Q1HRG6 + More
A0A3B4AY07 H2VDH8 A0A3Q4B1M1 Q4S244 A0A3B4XXX4 A0A3B4U8K1 A0A3Q1HY49 A0A3B4XUV0 A0A3B4U909 A0A3Q4HPD9 A0A3Q4HPD0 A0A3Q2VG66 A0A3Q3L2J3 I3KE05 A0A3B4F6Q7 A0A3P8R5K4 A0A3P9BJE7 A0A3P8VRJ9

Pubmed

18362917 19820115 28004739 25463417 21551351 15496914 + More
25186727 24487278

EMBL

KQ971354 KYB26388.1 GEZM01097030 GEZM01097024 JAV54334.1 GEZM01097029 + More
GEZM01097026 JAV54335.1 CAAE01014764 CAG05288.1 AERX01036544 AERX01036545 AERX01036546 AERX01036547

Proteomes

UP000007266 UP000261600 UP000265040 UP000261520 UP000005226 UP000261620 + More
UP000261360 UP000261420 UP000261580 UP000264840 UP000261640 UP000005207 UP000261460 UP000265100 UP000265160 UP000265120

Pfam

PF00271   Helicase_C        + More
PF00270   DEAD
PF00570   HRDC
PF16124   RecQ_Zn_bind
PF09382   RQC

Interpro

IPR004589   DNA_helicase_ATP-dep_RecQ        + More
IPR010997   HRDC-like_sf
IPR032284   RecQ_Zn-bd
IPR027417   P-loop_NTPase
IPR002464   DNA/RNA_helicase_DEAH_CS
IPR001650   Helicase_C
IPR036390   WH_DNA-bd_sf
IPR002121   HRDC_dom
IPR014001   Helicase_ATP-bd
IPR018982   RQC_domain
IPR036388   WH-like_DNA-bd_sf
IPR007527   Znf_SWIM
IPR011545   DEAD/DEAH_box_helicase_dom

SUPFAM

SSF46785   SSF46785        + More
SSF52540   SSF52540
SSF47819   SSF47819

Gene 3D

1.10.10.10

CDD

cd00079 HELICc

ProteinModelPortal

A0A139WEI1 A0A1Y1JYD8 A0A1Y1K3Y3 A0A3Q3IB98 A0A3Q3IBA4 A0A3Q1HRG6 + More
A0A3B4AY07 H2VDH8 A0A3Q4B1M1 Q4S244 A0A3B4XXX4 A0A3B4U8K1 A0A3Q1HY49 A0A3B4XUV0 A0A3B4U909 A0A3Q4HPD9 A0A3Q4HPD0 A0A3Q2VG66 A0A3Q3L2J3 I3KE05 A0A3B4F6Q7 A0A3P8R5K4 A0A3P9BJE7 A0A3P8VRJ9

KEGG

105842591 no KO assigned | (RefSeq) zinc finger SWIM domain-containing protein 6-like

GO

GO:0032508 GO:0006281 GO:0005524 GO:0008270 GO:0003676 GO:0000724 GO:0043140 GO:0006310 GO:0005694 GO:0005737 GO:0005634 GO:0009378 GO:0006268

Length:

156

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18276

Exp number, first 60 AAs:

0.00454

Total prob of N-in:

0.39320

outside

1 - 156

Pi

134.28366

Theta

168.895191

Tajima's D

-0.644581

CLR

0.678785

CSRT

0.208739563021849

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics