Gene

KWMTBOMO11322

Pre Gene Modal

BGIBMGA001981

Annotation

PREDICTED:_zinc_finger_SWIM_domain-containing_protein_4-like_[Plutella_xylostella]

Location

Bomo_Chr19(-):3194547-3210450      View in EpiBrowser

Full name

Ribosomal protein L15      

Location in the cell

Mitochondrial   Reliability : 1.015 Nuclear   Reliability : 1.39 PlasmaMembrane   Reliability : 1.017

CDS

ATGTTGGAAAAGTCGAGACCTAATAACTACGAACGTGAATACAGAAGAGCTAGCAAGAGATTAAGACTACACAACCAGAGAACAGCGACCCACCTGGCGCCAAGAACTGTGTTCCACAAGGCGTTGGACGCGGTCGACATATCCTGGGAGAACGATCACCTGAAGAACATCCTCGGCGGTGACGAATACTCGGACCCGGACAAGCCGGAAAAGCCGAGCGGCTCCAGTTCCACCACGCTGCAACCTTACCCCAAGTTCAATGAACTCGGGCAGCCTTTGTGGCACGAGCATTTGCCGGTCGTAGGGGCGAGGATAGAAGCTCTGAGGGCGCATGGCCGAGCCCCGGCCGCTCTGAGGCTGGCCGTCAGCGCCGCCCGCGCTATGAGACACCGACAGGAAGTAGCCCAGCAGCGATGGCAGAGCGTGGGTGCCGGGGAGGCCTCGTCGAGCGGGGACAGCAAGGCTTGTTCCGGCCCGGAGACGTGCTCGGGGAACTGCGGGGAGCGCGTCAAGCTGTCGCTGGTGTGCGCGCACATGGACAGCGGCGCCTGCCAGTCCGGCGGGGCCACCTGCGCCCTGTCGCACACGCAGCGCTGCATCGGCAGAGACAGCCGATGCTGGACTGGCTGGACGCTGGAGGCGATCTGGTGCGTGTACGAGTGCCTGGCGGACGCGTGCCTAGCGCCAGACGACCAGCGCGCCTCCCCGCGCCTGCACACCGCCTACCTGGACGAGGAGCCCAACACCGGCTTGCCGCCGAGGTACCAGCACGTACCGGTTGCCGGTAGTAAGAACCCCGAGGAGACGTATCTGGCGCTGGCGTTAGAGGCCGCGCTGCTGGGCCTCGGCATGCAGAGGATGCTGCCAAGCGGCCTCTACGCTCAAGAAAGGTATTGTAAACAGGAGGAGCGTCTGATTTCCCAACTGCAGCGCGTGGAGGGTGAGGCTGCGGCGGGGGTGTGCGGGCGGGCGGCGGGGGCGCTGCTGGCGGGGGGCCCGGCCTCGTGTCTGGGCGCCACCGTGCACCCCCGCTCGGCTCCAGCGCACACCTTCGCGCGGTATCTCTTCCTCACTCTTCTACCAGCTGATCCTGATCTTGCATATAGGGTCGGCTTAAGGGCTATGAGGTTACCAATGGTCGAAGAGGCGTACGCGCTAGACGCAGGGGGCGCGGGGGGCAGCGCCGCCAGCGTGGGGGGCGGGGGGGCGTGGCACACGCTGCAGCACGCGGAGCAACAGCAGGCGGCGCTGGCGAGCGCGCTGCTGGGGGCGGCCCGGGGCTCCCCCGCCCGACTGCGGGCGGCCCTGGCGGCGGCACAGCGGCACGTGAGGTCGGCGGCGCAACTGTTCCGGCTGGCCCAAGACGCGTTGAGGCACGCTGCTCCGCCCGACGCCCCACACCACCACCGAGACTTGTTGGCGGCTGCCTTCGAACTTGGACTTCAGGTGTTGAGGATGACCTTGGCATCAGTGAACTGGAGGAGGAGGGAGATGGTGCGCTGGCTGGTCACGTGCGCCACGGAGCTCGGCCTGGACGCCCTGCTCTCCATCATGCAGAACTGGTACGAACTGTTCACGCCCACCGAGGCAACGGGTCCGGTGGCCGCGGCGGCCATGTCCCACGCCACCGCCCTCCGACTGGGGCTCACGTTCGAGCAGCAGGAGAAGTTGAGTGCGTGCGCGCGGACGCTAGCTCTGCAGTGCGCCGCCAAGGACCCGCCGGGGTGCGCCCTGAGCGCCCTCTCGGTGTGCGAGGGGTCCGCGGGGGCCTTCGAGGCTGCGTGTGCGGCCGTGGGGGGCGCGGCGGCTCGAGGAGCGCTGGCCTCCAGCCAACTGTTCGCTGTGGCCCGGTACATGGAGCAAAGGGGACAGCCGGCTAGAGCGATGCGACTCGCGACGCTAGCGATGAGGAACCTCCACTTACATTACAACCAGGACAGCCACCCGGCCATAGCGGACATCCACTGGGCGGTGGCGCTGGCGCACTCGCTGGGTCGCGCCGAGCTGCAGGCCATGCTACCACTGCTGGTCAAGAACGTGCAGTGCGCGCCCGTGCTGTCGGACGTGCTGCGACGGTGCTGTGTGGCGGCGGCGGGCTGCTCGCGGTCCCGGCCTCCGCCCCCGCGGCCCCCCACCCCGCTGCGGCCCCTGCTGGAGGCGGCGCTGCGGGCCTACGCGTCCACCACGCACGCGAGGCTCGCGCATATATCGCCCCGACACTACGCCGACTTCGTTGACTTCTTGGGCAAAGCCCGCGACACGTTTGCTTTGGCGCACGACGGACCACACCAGTTCGCCGCGCTGCTGCAAGAAATCAAACTTAAATACAAAGGGAAGAAGAAACTGATGTTCCTCGTCAAAGAGAGGTTCGGATGA

Protein

MLEKSRPNNYEREYRRASKRLRLHNQRTATHLAPRTVFHKALDAVDISWENDHLKNILGGDEYSDPDKPEKPSGSSSTTLQPYPKFNELGQPLWHEHLPVVGARIEALRAHGRAPAALRLAVSAARAMRHRQEVAQQRWQSVGAGEASSSGDSKACSGPETCSGNCGERVKLSLVCAHMDSGACQSGGATCALSHTQRCIGRDSRCWTGWTLEAIWCVYECLADACLAPDDQRASPRLHTAYLDEEPNTGLPPRYQHVPVAGSKNPEETYLALALEAALLGLGMQRMLPSGLYAQERYCKQEERLISQLQRVEGEAAAGVCGRAAGALLAGGPASCLGATVHPRSAPAHTFARYLFLTLLPADPDLAYRVGLRAMRLPMVEEAYALDAGGAGGSAASVGGGGAWHTLQHAEQQQAALASALLGAARGSPARLRAALAAAQRHVRSAAQLFRLAQDALRHAAPPDAPHHHRDLLAAAFELGLQVLRMTLASVNWRRREMVRWLVTCATELGLDALLSIMQNWYELFTPTEATGPVAAAAMSHATALRLGLTFEQQEKLSACARTLALQCAAKDPPGCALSALSVCEGSAGAFEAACAAVGGAAARGALASSQLFAVARYMEQRGQPARAMRLATLAMRNLHLHYNQDSHPAIADIHWAVALAHSLGRAELQAMLPLLVKNVQCAPVLSDVLRRCCVAAAGCSRSRPPPPRPPTPLRPLLEAALRAYASTTHARLAHISPRHYADFVDFLGKARDTFALAHDGPHQFAALLQEIKLKYKGKKKLMFLVKERFG

Similarity

Belongs to the eukaryotic ribosomal protein eL15 family.

Uniprot

A0A2H1W1I7   A0A2W1BKZ6   A0A194QKW0   A0A2J7R5C2   A0A1B6KGE9   A0A0P5KGV5   + More
A0A0P5MDB2   A0A0P5BLP8   A0A164N7M9   A0A0P5SNY2   A0A0P5KEL1   A0A0N7ZV03   A0A0P4Z4U2   A0A0P5TGU7   A0A0P5DFL0   A0A0P6I2K5   T1IH18   V5GMJ0   E9GW92   T1I607   A0A210R0K5   B7Q5X8   A0A1J1I2D1   A0A1S3LYD0   A0A1S3LZ08   A0A1S3JLV0   A0A1S3JKI3   A0A1S3JKI8   A0A1S3JL69   D2HC32   G1M4H8   L5LIL7   A0A2U3XC54   A0A1S3WL95   L8IM78   F1S366   T0NPL2   L5KN64   G1NWW0   A0A3Q7WIG5   F1PL40   A0A1W4ZYS2   S7Q869   H0X126   A0A3P4MDK3   U6DCA1   A0A2K5BY81   A0A1A7YJB7   A0A286ZZ19   A0A384CT13   W5U5Z0   A0A341CWE1   A0A2C9JI33   A0A287B5A8   A0A3Q3XKR1   A0A2I4AJE1   A0A383YPN3   A0A3Q7MZP2   H2SAN3   A0A1A8II62   A0A2Y9GK98   A0A3Q7RZS2   A0A1A7X8V2   A0A2Y9IV69   A0A1A8CH93   A0A3Q2GYC9   A0A1A7ZC17   A0A2U3VYR4   A0A337S0G6   A0A1A8MU71   A0A1A8NBF8   A0A3B4B9S4   F6TIT2   A0A3Q1HY84   A0A091CTI0   A0A2U9BLR3   U3IQQ9   A0A2U4BK59   A0A2Y9SI80   R0LE50   A0A0D9S7G4   A0A2I0LYW6   B8JLP8   H0VMQ6   U3JR58   A0A2I4AWQ6   A0A3L8SP28   A0A2Y9N901   A0A087Y7I2   A0A2Y9DCK3   A0A218VET6   A0A3Q1I6W3   A0A226PFQ9  

Pubmed

28756777    26354079    21292972    28812685    20010809    22751099    + More
23149746    23258410    21993624    16341006    23127152    15562597    21551351    19892987    17975172    25463417    23749191    23371554    23594743    30282656    24621616   

EMBL

ODYU01005752    SOQ46928.1    KZ150054    PZC74345.1    KQ459053    KPJ04086.1    + More
NEVH01006994    PNF36029.1    GEBQ01029464    JAT10513.1    GDIQ01189684    JAK62041.1    GDIQ01165598    JAK86127.1    GDIP01183463    JAJ39939.1    LRGB01002864    KZS05713.1    GDIP01161314    GDIP01137373    JAL66341.1    GDIQ01185289    JAK66436.1    GDIP01209913    JAJ13489.1    GDIP01220517    JAJ02885.1    GDIP01130073    JAL73641.1    GDIP01157122    JAJ66280.1    GDIQ01010502    JAN84235.1    JH429682    GALX01003147    JAB65319.1    GL732569    EFX76311.1    ACPB03013110    ACPB03013111    ACPB03013112    NEDP02001046    OWF54411.1    ABJB010371273    ABJB010444886    ABJB010469975    ABJB010645386    ABJB010715593    ABJB010830906    ABJB010904721    ABJB011067555    ABJB011100305    DS863867    EEC14250.1    CVRI01000038    CRK94437.1    GL192675    EFB27508.1    ACTA01001745    ACTA01009745    ACTA01017745    ACTA01025745    ACTA01033745    ACTA01041744    ACTA01049744    ACTA01177736    ACTA01185734    ACTA01193732    KB111315    ELK26042.1    JH880979    ELR57451.1    AEMK02000049    KB016655    EQB77462.1    KB030630    ELK13144.1    AAPE02035676    AAEX03009785    KE164332    EPQ17082.1    AAQR03170513    AAQR03170514    AAQR03170515    AAQR03170516    AAQR03170517    AAQR03170518    AAQR03170519    AAQR03170520    AAQR03170521    AAQR03170522    CYRY02010476    VCW78672.1    HAAF01008385    CCP80209.1    HADX01008094    SBP30326.1    JT405525    AHH37220.1    HAED01010585    SBQ96797.1    HADW01000210    HADW01013132    SBP14532.1    HADZ01014487    SBP78428.1    HADY01001165    SBP39650.1    AANG04003279    HAEF01018972    SBR60131.1    HAEH01001190    SBR66403.1    KN124514    KFO20870.1    CP026249    AWP04606.1    ADON01085570    ADON01085571    ADON01085572    ADON01085573    ADON01085574    ADON01085575    ADON01085576    ADON01085577    KB743274    EOA99799.1    AQIB01144830    AQIB01144831    AQIB01144832    AQIB01144833    AQIB01144834    AQIB01144835    AQIB01144836    AQIB01144837    AQIB01144838    AQIB01144839    AKCR02000060    PKK22625.1    CU469530    CU571330    AAKN02055186    AAKN02055187    AAKN02055188    AAKN02055189    AAKN02055190    AAKN02055191    AGTO01021085    QUSF01000010    RLW05774.1    AYCK01014255    MUZQ01000002    OWK64429.1    AWGT02000077    OXB78913.1   

Proteomes

UP000053268    UP000235965    UP000076858    UP000000305    UP000015103    UP000242188    + More
UP000001555    UP000183832    UP000087266    UP000085678    UP000008912    UP000245341    UP000079721    UP000008227    UP000010552    UP000001074    UP000286642    UP000002254    UP000192224    UP000005225    UP000233020    UP000261680    UP000221080    UP000252040    UP000076420    UP000261620    UP000192220    UP000261681    UP000286641    UP000005226    UP000248481    UP000286640    UP000248482    UP000002281    UP000245340    UP000011712    UP000261520    UP000257200    UP000028990    UP000246464    UP000016666    UP000245320    UP000248484    UP000029965    UP000053872    UP000000437    UP000005447    UP000016665    UP000276834    UP000248483    UP000028760    UP000248480    UP000197619    UP000265040    UP000198419   

PRIDE

F1S366   

Pfam

PF07679   I-set        + More
PF01391   Collagen
PF02191   OLF
PF00827   Ribosomal_L15e

Interpro

IPR007527   Znf_SWIM        + More
IPR008160   Collagen       
IPR003112   Olfac-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013098   Ig_I-set       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR024794   Rbsml_L15e_core_dom_sf       
IPR012678   Ribosomal_L23/L15e_core_dom_sf       
IPR000439   Ribosomal_L15e       

SUPFAM

SSF48726   SSF48726        + More
SSF54189   SSF54189       

Gene 3D

2.60.40.10     3.40.1120.10    

ProteinModelPortal

A0A2H1W1I7   A0A2W1BKZ6   A0A194QKW0   A0A2J7R5C2   A0A1B6KGE9   A0A0P5KGV5   + More
A0A0P5MDB2   A0A0P5BLP8   A0A164N7M9   A0A0P5SNY2   A0A0P5KEL1   A0A0N7ZV03   A0A0P4Z4U2   A0A0P5TGU7   A0A0P5DFL0   A0A0P6I2K5   T1IH18   V5GMJ0   E9GW92   T1I607   A0A210R0K5   B7Q5X8   A0A1J1I2D1   A0A1S3LYD0   A0A1S3LZ08   A0A1S3JLV0   A0A1S3JKI3   A0A1S3JKI8   A0A1S3JL69   D2HC32   G1M4H8   L5LIL7   A0A2U3XC54   A0A1S3WL95   L8IM78   F1S366   T0NPL2   L5KN64   G1NWW0   A0A3Q7WIG5   F1PL40   A0A1W4ZYS2   S7Q869   H0X126   A0A3P4MDK3   U6DCA1   A0A2K5BY81   A0A1A7YJB7   A0A286ZZ19   A0A384CT13   W5U5Z0   A0A341CWE1   A0A2C9JI33   A0A287B5A8   A0A3Q3XKR1   A0A2I4AJE1   A0A383YPN3   A0A3Q7MZP2   H2SAN3   A0A1A8II62   A0A2Y9GK98   A0A3Q7RZS2   A0A1A7X8V2   A0A2Y9IV69   A0A1A8CH93   A0A3Q2GYC9   A0A1A7ZC17   A0A2U3VYR4   A0A337S0G6   A0A1A8MU71   A0A1A8NBF8   A0A3B4B9S4   F6TIT2   A0A3Q1HY84   A0A091CTI0   A0A2U9BLR3   U3IQQ9   A0A2U4BK59   A0A2Y9SI80   R0LE50   A0A0D9S7G4   A0A2I0LYW6   B8JLP8   H0VMQ6   U3JR58   A0A2I4AWQ6   A0A3L8SP28   A0A2Y9N901   A0A087Y7I2   A0A2Y9DCK3   A0A218VET6   A0A3Q1I6W3   A0A226PFQ9  

KEGG

NA   

GO

GO:0008270   GO:0016021   GO:1902667   GO:0031462   GO:0005840  

Length:

791

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0333300000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00087

outside

1  -  791

 

 

Pi

230.15765

Theta

154.065242

Tajima's D

1.627439

CLR

0.349072

CSRT

0.818409079546023

Interpretation

Uncertain