Silkworm Genome Informatics Database

Gene

KWMTBOMO11321

Pre Gene Modal

BGIBMGA001843

Annotation

PREDICTED:_Bardet-Biedl_syndrome_4_protein_homolog_[Amyelois_transitella]

Location

Bomo_Chr19(+):3183891-3187731 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.379 Nuclear Reliability : 1.057 PlasmaMembrane Reliability : 1.117

CDS

ATGTTACTCGCCACTAACAACGTGAATGGAGCTTTAGCAGCTTATGACGAAGCGCTTTCCGCACACGCATGCGGTGCGGACACTATGGCCGCAGCGGGGGCTCTGAGACTTCGAGCAGGTGATCCCCGTCGTGCGTTCCAACTACTAGGGGCAGCTCTAGCTCAGCAACCGTCTCACCACGCCGCAGCACTGGCCCTCGCCGCCATGATGCTGCAGCACAAAGACGTTGATGCGTCTTTAGCTAGATTAAAGACTGCATTGACAGCACACCCGGAATGCGTGGCGGCACATACTAACTTGGGACTCGCTCTGATTGCGAAGAAGAAATTTGTTGCCGCGTTGACATGTCTTCAGCGGGCGGTTTGGGCCGCGCCATTAAACGGTCGCGCGGCTCATGACTTGGGCCTAGCCTTGTTGGTTTGTAAGAGACCCACCTCAGCATTTTGCAGATTGGCTGCGGCAGCTGCCCTACAACCATCTCAACCTTACACCGTTCTGCTAATAGCTATTGCTCTCGAGCGACTGGATGACAGCAGATCGGATGCTGCTTACGCCCGGGCGGTAAGGTTGTCACCTCAAGATCCTCTCATTCGAATGAACATGGCCGGCAGACATGCGAGAACAGGACGCCTGTCTCAAGCTCTGGAAGAGGCAGAGATTGTTGCTGAACTCCTGCGGGGAGATGACACGCCTGACCCTCATTTGTCAAGTTCTCTGGCGTCACTCCTGGCAGCATTGCACTATGCAGGGGCGCAGCTGTCAGAGTCAACATCAAGCTTGCCTGATGCAGATTCAGCCCTGTCTGCAAACTCTCCCGCATCAGATGATGTCAATATGGGCCCTGATGAAGTTTAG

Protein

MLLATNNVNGALAAYDEALSAHACGADTMAAAGALRLRAGDPRRAFQLLGAALAQQPSHHAAALALAAMMLQHKDVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLNGRAAHDLGLALLVCKRPTSAFCRLAAAAALQPSQPYTVLLIAIALERLDDSRSDAAYARAVRLSPQDPLIRMNMAGRHARTGRLSQALEEAEIVAELLRGDDTPDPHLSSSLASLLAALHYAGAQLSESTSSLPDADSALSANSPASDDVNMGPDEV

Uniprot

A0A2H1W1U8 A0A2W1BGV8 A0A2A4JMU4 A0A0L7LAE1

Pubmed

28756777 26227816

EMBL

ODYU01005752 SOQ46926.1 KZ150054 PZC74349.1 NWSH01001016 PCG73106.1 + More
JTDY01002074 KOB72171.1

Proteomes

UP000218220 UP000037510

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat
IPR013026   TPR-contain_dom

SUPFAM

SSF48452 SSF48452

Gene 3D

1.25.40.10

ProteinModelPortal

A0A2H1W1U8 A0A2W1BGV8 A0A2A4JMU4 A0A0L7LAE1

KEGG

101741888 K16531 Bardet-Biedl syndrome 4 protein | (RefSeq) Bardet-Biedl syndrome 4 protein homolog

GO

GO:0005515 GO:0006516 GO:0008270 GO:0042555 GO:0006260 GO:0006811 GO:0005622 GO:0006810 GO:0003824

Length:

284

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0777500000000001

Exp number, first 60 AAs:

0.03237

Total prob of N-in:

0.02675

outside

1 - 284

Pi

140.628854

Theta

119.136832

Tajima's D

0.072802

CLR

0

CSRT

0.391430428478576

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics