Gene

KWMTBOMO11317  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001984

Annotation

Putative_deoxyribonuclease_TATDN1_[Papilio_machaon]

Location

Bomo_Chr19(-):3140909-3144060      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.568 Nuclear   Reliability : 1.27

CDS

ATGCCAAGAGACAAACTCATGATCGAAACCGACTGTCCGTGGTGCGAAATAAAACCCACCCATCCAGGTTATTGTCATGTCAACACGAAGTTTGAGACTGTAAAAAAGACAAAGTATTCTCTACAGAGGAACGCTCAGGTCAAGGGTAGAAACGAGCCCGTTAATATAGTGAACGTACTCGAGGTGTTGGCTGCAGTGCGCGGAGACGACGCTGACGAATTAGCAGCTGCCATTTATGAGAATACGAACAAAATGTTTTTTCCTGATCGTTTGTAA

Protein

MPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQRNAQVKGRNEPVNIVNVLEVLAAVRGDDADELAAAIYENTNKMFFPDRL

Similarity

Belongs to the Toll-like receptor family.

Uniprot

A0A2H1VER8   A0A194QVN2   A0A2W1BRH2   A0A194QGL7   A0A3S2NNI6   A0A212F099   + More
W4ZJ67   A0A2P8Z375   A0A1V9X6Y4   A0A2R7VPJ1   A0A1V9ZMV9   A0A0P4WAD3   T0Q880   A0A1E1X9Q2   A0A023GBY8   A0A224YWV7   A0A131Z3Y5   A0A293LX68   A0A1B6E1P5   L7M2A1   A0A1B6DU06   A0A1B6CB08   A0A0P4WG58   K3WLA3   A0A075LYJ4   A0A067D2W1   A0A1Y3AST9   A0A1B6DTS4   R4WJX6   A0A131XFK4   A0A2B4SJ92   A7RI60   A0A1J1IEN9   E0VMD1   K7J1Y6   A0A1S3DNY9   R7UM53   D3B972   A0A2L2YXN0   A0A0P4VT28   R4G8E2   A0A0J7KV48   F4WVA3   A0A0A9Z9Y4   A0A146M136   A0A224XSU1   A0A158NNV7   A0A195EW08   A0A151IWT8   A0A0K8S2X0   A0A0M8ZUG0   A0A0R3UFB8   A0A069DRU5   A0A151IC92   A0A151WJT5   A0A3S4R5V5   A0A232EV92   A0A087T6Z5   A0A0A9ZF80   A0A0R3W5W6   A0A024G161   A0A0R3SPJ9   E2A8B2   A0A154PP52   A0A026WRQ3   A0A3L8DN63   A0A2A3EQZ1   A0A087ZUX7   A0A1V9ZYQ1   W4H8B5   A0A3M6UVC6   V4BH29   A0A3P6QMG9   A0A369S8V8   B3RJU2   A0A0V0G4A0   D6WQZ9   C4WSN5   A0A2S2N6Z3   F6S8Z0   G4Z2K2   A0A075LX84   A0A158QIB9   A0A1W2WK89   A0A2H8TGL3   A0A182PG64   W6UDH3   A0A074ZAQ7   A0A2T7NNK9   A0A2S2Q6F1   A0A068XME0   E2BYY4   A0A075M388   W2L8J9   W2ZDD7   A0A3S0ZWG5   A0A2R5LH97   W2L8D5   A0A1W4X6Z6  

Pubmed

26354079    28756777    22118469    29403074    28327890    25527045    + More
28503490    28797301    26830274    25576852    24940989    23785293    23691247    28049606    17615350    20566863    20075255    23254933    21757610    26561354    27129103    21719571    25401762    26823975    21347285    26334808    28648823    20798317    24508170    30249741    30382153    30042472    18719581    18362917    19820115    12481130    15114417    16946064    24013640   

EMBL

ODYU01002171    SOQ39325.1    KQ461073    KPJ09532.1    KZ150054    PZC74353.1    + More
KQ459053    KPJ04080.1    RSAL01000205    RVE44359.1    AGBW02011140    OWR47152.1    AAGJ04159763    AAGJ04159764    AAGJ04159765    PYGN01000217    PSN50956.1    MNPL01022460    OQR69032.1    KK854011    PTY09286.1    JNBR01000072    OQR99281.1    GDRN01074422    JAI63247.1    JH767156    EQC34069.1    GFAC01003238    JAT95950.1    GBBM01004044    JAC31374.1    GFPF01007166    MAA18312.1    GEDV01003097    JAP85460.1    GFWV01008584    MAA33313.1    GEDC01005477    JAS31821.1    GACK01007776    JAA57258.1    GEDC01008673    GEDC01008150    JAS28625.1    JAS29148.1    GEDC01026823    JAS10475.1    GDRN01074423    JAI63246.1    GL376573    KM024050    AIF71156.1    KK583193    KDO33086.1    MUJZ01064335    OTF70713.1    GEDC01008221    JAS29077.1    AK417920    BAN21135.1    GEFH01002792    JAP65789.1    LSMT01000079    PFX28648.1    DS469511    EDO48973.1    CVRI01000047    CRK98234.1    DS235307    EEB14537.1    AMQN01007128    KB300038    ELU07310.1    ADBJ01000021    EFA82111.1    IAAA01078578    LAA12789.1    GDKW01001461    JAI55134.1    ACPB03012671    GAHY01001127    JAA76383.1    LBMM01002789    KMQ94362.1    GL888384    EGI61869.1    GBHO01001527    JAG42077.1    GDHC01006053    JAQ12576.1    GFTR01004916    JAW11510.1    ADTU01021806    KQ981953    KYN32450.1    KQ980843    KYN12296.1    GBRD01018201    JAG47626.1    KQ435845    KOX71197.1    UXSR01005213    VDD79784.1    GBGD01002224    JAC86665.1    KQ978062    KYM97707.1    KQ983031    KYQ48122.1    NCKU01001492    RWS11996.1    NNAY01002039    OXU22255.1    KK113717    KFM60884.1    GBHO01001526    JAG42078.1    UYRS01018424    VDK35252.1    CAIX01000005    CCI40055.1    UYSG01010886    VDL59214.1    GL437526    EFN70325.1    KQ435007    KZC13649.1    KK107128    EZA58371.1    QOIP01000006    RLU21874.1    KZ288193    PBC34185.1    JNBS01000998    OQS03089.1    KI913115    ETV87363.1    RCHS01000646    RMX57539.1    KB199650    ESP05247.1    UYRU01009455    VDK43933.1    NOWV01000045    RDD42991.1    DS985241    EDV29121.1    GECL01003240    JAP02884.1    KQ971351    EFA06484.1    ABLF02033862    AK340264    BAH70905.1    GGMR01000316    MBY12935.1    EAAA01001615    JH159153    EGZ21431.1    KM024044    AIF71150.1    UZAE01012495    VDO05408.1    GFXV01001429    MBW13234.1    APAU02000045    EUB59380.1    KL596820    KER24173.1    PZQS01000010    PVD22761.1    GGMS01003977    MBY73180.1    GL451531    EFN79102.1    KM024047    AIF71153.1    KI679542    ETL93667.1    ANIY01001770    ETP45011.1    RQTK01000196    RUS84705.1    GGLE01004777    MBY08903.1    ETL93671.1   

Proteomes

UP000053240    UP000053268    UP000283053    UP000007151    UP000007110    UP000245037    + More
UP000192247    UP000243579    UP000030762    UP000030745    UP000225706    UP000001593    UP000183832    UP000009046    UP000002358    UP000079169    UP000014760    UP000001396    UP000015103    UP000036403    UP000007755    UP000005205    UP000078541    UP000078492    UP000053105    UP000046399    UP000267029    UP000078542    UP000075809    UP000285301    UP000215335    UP000054359    UP000046400    UP000282613    UP000053237    UP000046397    UP000274504    UP000000311    UP000076502    UP000053097    UP000279307    UP000242457    UP000005203    UP000243217    UP000019040    UP000275408    UP000030746    UP000253843    UP000009022    UP000007266    UP000007819    UP000008144    UP000002640    UP000046398    UP000278807    UP000075885    UP000019149    UP000245119    UP000008237    UP000054423    UP000018948    UP000271974    UP000192223   

Pfam

PF01026   TatD_DNase        + More
PF05485   THAP
PF13855   LRR_8
PF01582   TIR

Interpro

IPR032466   Metal_Hydrolase        + More
IPR001130   TatD_family       
IPR018228   DNase_TatD-rel_CS       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       
IPR000157   TIR_dom       
IPR001611   Leu-rich_rpt       
IPR000483   Cys-rich_flank_reg_C       
IPR035897   Toll_tir_struct_dom_sf       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       

SUPFAM

SSF51556   SSF51556        + More
SSF52200   SSF52200       

Gene 3D

3.30.40.180     3.40.50.10140     3.80.10.10    

CDD

cd01310  TatD_DNAse

ProteinModelPortal

A0A2H1VER8   A0A194QVN2   A0A2W1BRH2   A0A194QGL7   A0A3S2NNI6   A0A212F099   + More
W4ZJ67   A0A2P8Z375   A0A1V9X6Y4   A0A2R7VPJ1   A0A1V9ZMV9   A0A0P4WAD3   T0Q880   A0A1E1X9Q2   A0A023GBY8   A0A224YWV7   A0A131Z3Y5   A0A293LX68   A0A1B6E1P5   L7M2A1   A0A1B6DU06   A0A1B6CB08   A0A0P4WG58   K3WLA3   A0A075LYJ4   A0A067D2W1   A0A1Y3AST9   A0A1B6DTS4   R4WJX6   A0A131XFK4   A0A2B4SJ92   A7RI60   A0A1J1IEN9   E0VMD1   K7J1Y6   A0A1S3DNY9   R7UM53   D3B972   A0A2L2YXN0   A0A0P4VT28   R4G8E2   A0A0J7KV48   F4WVA3   A0A0A9Z9Y4   A0A146M136   A0A224XSU1   A0A158NNV7   A0A195EW08   A0A151IWT8   A0A0K8S2X0   A0A0M8ZUG0   A0A0R3UFB8   A0A069DRU5   A0A151IC92   A0A151WJT5   A0A3S4R5V5   A0A232EV92   A0A087T6Z5   A0A0A9ZF80   A0A0R3W5W6   A0A024G161   A0A0R3SPJ9   E2A8B2   A0A154PP52   A0A026WRQ3   A0A3L8DN63   A0A2A3EQZ1   A0A087ZUX7   A0A1V9ZYQ1   W4H8B5   A0A3M6UVC6   V4BH29   A0A3P6QMG9   A0A369S8V8   B3RJU2   A0A0V0G4A0   D6WQZ9   C4WSN5   A0A2S2N6Z3   F6S8Z0   G4Z2K2   A0A075LX84   A0A158QIB9   A0A1W2WK89   A0A2H8TGL3   A0A182PG64   W6UDH3   A0A074ZAQ7   A0A2T7NNK9   A0A2S2Q6F1   A0A068XME0   E2BYY4   A0A075M388   W2L8J9   W2ZDD7   A0A3S0ZWG5   A0A2R5LH97   W2L8D5   A0A1W4X6Z6  

PDB

2XIO     E-value=3.39408e-18,     Score=218

KEGG

101742036    K03424 TatD DNase family protein [EC:3.1.21.-] | (RefSeq) putative deoxyribonuclease TATDN1

GO

GO:0016888   GO:0008296   GO:0016788   GO:0003677   GO:0045087   GO:0016021   GO:0007165   GO:0003676   GO:0008270   GO:0005515   GO:0042555   GO:0006260   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Length:

91

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0009

Exp number, first 60 AAs:

0.00048

Total prob of N-in:

0.32704

outside

1  -  91

 

 

Pi

171.247496

Theta

41.163894

Tajima's D

0.499721

CLR

1.755035

CSRT

0.516874156292185

Interpretation

Uncertain